Rh3BG347500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0013289
Physical Location & Seq
Forward (+)
38155866 .. 38157248
1383 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG347500.1

Sequence Viewer

Length: 372 bp
ATGGCTCTGGCATGGGGTGCTGCCGCTGCTCCATTGTTTTCTCTCCCTAAAAATCCGAAACCGAGTTTGAGATTTGGTACATTCCGATGCTCAACGAAGCCCAACAACAACGGCAACAACAAAATAGCGCTCAGGACTTGCAAGAATTGCAAAACCCAGTTCGATCCATCTCTCAATCACCTCAGGGCTTGTCGATTTCACACCGCTCATTTTGGAGGAGAAACAAAGAGGAAGTTTGAGAGTGTGTACACGGGGGGCACCATGAGTAGTCCCAACTCTGGCAAAGTTGTTCAATACTGGCATTGCTGTGGGTCTGAAGATCCCTTTGACCCTGGATGTACCGCTACTCCTCACTCCTCCTATGATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.49

Weight (kDa)

9.21

Isoelectric Point (pI)

42.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013289)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38060 AT5G38060
fragaria_vesca FvH4_4g24890
prunus_persica Prupe.3G151500_v2.0.a1 Prupe.3G151500_v2.0.a1 Prupe.3G151500_v2.0.a1 Prupe.3G151500_v2.0.a1
pyrus_communis pycom09g17450
rosa_chinensis RchiOBHm_Chr3g0493581
rosa_laevigata RLG00000022702
rosa_multiflora Rmu_sc0000568.1_g000002
rosa_roxburghii Rroxscaffold_6G00391460
rosa_rugosa Rorug03G0262900
rosa_samantha Rh3AG311500 Rh3BG347500 Rh3CG345500 Rh3DG347700
rosa_wichuraiana Rw3G027350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 257
AccBSI CCGCTC 1 cut(s) 206
AciI CCGC 3 cut(s) 24, 204, 342
AclWI GGATC 2 cut(s) 158, 314
AcuI CTGAAG 1 cut(s) 336
AfaI GTAC 3 cut(s) 79, 248, 340
AfeI AGCGCT 1 cut(s) 129
AfiI CCNNNNNNNGG 1 cut(s) 278
AgsI TTSAA 1 cut(s) 293
AjnI CCWGG 1 cut(s) 331
AlwI GGATC 2 cut(s) 158, 314
Aor51HI AGCGCT 1 cut(s) 129
ApeKI GCWGC 2 cut(s) 20, 26
AspLEI GCGC 1 cut(s) 130
AsuHPI GGTGA 1 cut(s) 170
AxyI CCTNAGG 1 cut(s) 182
BaeGI GKGCMC 1 cut(s) 260
BanI GGYRCC 1 cut(s) 257
BbvI GCAGC 2 cut(s) 7, 13
BccI CCATC 1 cut(s) 175
BceAI ACGGC 1 cut(s) 127
BciT130I CCWGG 1 cut(s) 333
BfoI RGCGCY 1 cut(s) 131
BisI GCNGC 3 cut(s) 21, 24, 27
BlsI GCNGC 3 cut(s) 22, 25, 28
Bme1390I CCNGG 1 cut(s) 333
BmiI GGNNCC 1 cut(s) 259
BmrFI CCNGG 1 cut(s) 333
BmrI ACTGGG 1 cut(s) 151
BmsI GCATC 1 cut(s) 77
BmuI ACTGGG 1 cut(s) 151
Bpu10I CCTNAGC 1 cut(s) 131
BsaJI CCNNGG 1 cut(s) 331
BsaXI ACNNNNNCTCC 2 cut(s) 331, 361
Bsc4I CCNNNNNNNGG 1 cut(s) 278
Bse1I ACTGG 2 cut(s) 157, 302
Bse21I CCTNAGG 1 cut(s) 182
Bse3DI GCAATG 1 cut(s) 301
BseBI CCWGG 1 cut(s) 333
BseDI CCNNGG 1 cut(s) 331
BseGI GGATG 1 cut(s) 341
BseLI CCNNNNNNNGG 1 cut(s) 278
BseMI GCAATG 1 cut(s) 301
BseMII CTCAG 2 cut(s) 145, 196
BseNI ACTGG 2 cut(s) 157, 302
BseRI GAGGAG 3 cut(s) 231, 339, 346
BseSI GKGCMC 1 cut(s) 260
BseXI GCAGC 2 cut(s) 7, 13
BshNI GGYRCC 1 cut(s) 257
BslFI GGGAC 1 cut(s) 255
BslI CCNNNNNNNGG 1 cut(s) 278
BsmFI GGGAC 1 cut(s) 255
Bsp1286I GDGCHC 1 cut(s) 260
Bsp1407I TGTACA 1 cut(s) 246
Bsp143I GATC 2 cut(s) 163, 319
BspACI CCGC 3 cut(s) 24, 204, 342
BspCNI CTCAG 2 cut(s) 144, 195
BspLI GGNNCC 1 cut(s) 259
BspPI GGATC 2 cut(s) 158, 314
BspT107I GGYRCC 1 cut(s) 257
BsrBI CCGCTC 1 cut(s) 206
BsrDI GCAATG 1 cut(s) 301
BsrGI TGTACA 1 cut(s) 246
BsrI ACTGG 2 cut(s) 157, 302
BssECI CCNNGG 1 cut(s) 331
BssMI GATC 2 cut(s) 163, 319
Bst2UI CCWGG 1 cut(s) 333
BstAPI GCANNNNNTGC 2 cut(s) 17, 147
BstAUI TGTACA 1 cut(s) 246
BstDEI CTNAG 2 cut(s) 131, 182
BstF5I GGATG 1 cut(s) 341
BstH2I RGCGCY 1 cut(s) 131
BstHHI GCGC 1 cut(s) 130
BstKTI GATC 2 cut(s) 166, 322
BstMBI GATC 2 cut(s) 163, 319
BstMWI GCNNNNNNNGC 3 cut(s) 17, 26, 147
BstNI CCWGG 1 cut(s) 333
BstSCI CCNGG 1 cut(s) 331
BstSLI GKGCMC 1 cut(s) 260
BstV1I GCAGC 2 cut(s) 7, 13
BstX2I RGATCY 1 cut(s) 319
BstYI RGATCY 1 cut(s) 319
Bsu36I CCTNAGG 1 cut(s) 182
BtsCI GGATG 1 cut(s) 341
CfoI GCGC 1 cut(s) 130
Csp6I GTAC 3 cut(s) 78, 247, 339
CviAII CATG 2 cut(s) 12, 262
CviJI RGCY 3 cut(s) 5, 100, 188
CviKI_1 RGCY 3 cut(s) 5, 100, 188
CviQI GTAC 3 cut(s) 78, 247, 339
DdeI CTNAG 2 cut(s) 131, 182
DpnI GATC 2 cut(s) 165, 321
DpnII GATC 2 cut(s) 163, 319
Eco47III AGCGCT 1 cut(s) 129
Eco57I CTGAAG 1 cut(s) 336
Eco81I CCTNAGG 1 cut(s) 182
EcoRII CCWGG 1 cut(s) 331
FaeI CATG 2 cut(s) 15, 265
FaiI YATR 3 cut(s) 13, 263, 363
FaqI GGGAC 1 cut(s) 255
FatI CATG 2 cut(s) 11, 261
Fnu4HI GCNGC 3 cut(s) 21, 24, 27
FokI GGATG 1 cut(s) 348
Fsp4HI GCNGC 3 cut(s) 21, 24, 27
GlaI GCGC 1 cut(s) 129
GluI GCNGC 3 cut(s) 21, 24, 27
HaeII RGCGCY 1 cut(s) 131
HhaI GCGC 1 cut(s) 130
Hin1II CATG 2 cut(s) 15, 265
Hin6I GCGC 1 cut(s) 128
HinP1I GCGC 1 cut(s) 128
HphI GGTGA 1 cut(s) 170
Hpy166II GTNNAC 2 cut(s) 247, 249
Hpy188I TCNGA 3 cut(s) 57, 86, 316
Hpy188III TCNNGA 1 cut(s) 133
Hpy8I GTNNAC 2 cut(s) 247, 249
HpyCH4V TGCA 2 cut(s) 141, 150
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 26, 147
HpyF3I CTNAG 2 cut(s) 131, 182
Hsp92II CATG 2 cut(s) 15, 265
HspAI GCGC 1 cut(s) 128
Kzo9I GATC 2 cut(s) 163, 319
LmnI GCTCC 1 cut(s) 34
LpnPI CCDG 7 cut(s) 118, 169, 170, 264, 283, 318, 345
Lsp1109I GCAGC 2 cut(s) 7, 13
LweI GCATC 1 cut(s) 77
MalI GATC 2 cut(s) 165, 321
MbiI CCGCTC 1 cut(s) 206
MboI GATC 2 cut(s) 163, 319
MboII GAAGA 1 cut(s) 329
MflI RGATCY 1 cut(s) 319
MhlI GDGCHC 1 cut(s) 260
MluCI AATT 1 cut(s) 145
MnlI CCTC 5 cut(s) 191, 209, 222, 360, 367
MslI CAYNNNNRTG 2 cut(s) 85, 306
MspA1I CMGCKG 1 cut(s) 26
MspR9I CCNGG 1 cut(s) 333
MvaI CCWGG 1 cut(s) 333
MwoI GCNNNNNNNGC 3 cut(s) 17, 26, 147
NdeII GATC 2 cut(s) 163, 319
NlaIII CATG 2 cut(s) 15, 265
NlaIV GGNNCC 1 cut(s) 259
PkrI GCNGC 3 cut(s) 22, 25, 28
Psp6I CCWGG 1 cut(s) 331
PspGI CCWGG 1 cut(s) 331
PspN4I GGNNCC 1 cut(s) 259
PsuI RGATCY 1 cut(s) 319
RsaI GTAC 3 cut(s) 79, 248, 340
RsaNI GTAC 3 cut(s) 78, 247, 339
RseI CAYNNNNRTG 2 cut(s) 85, 306
SatI GCNGC 3 cut(s) 21, 24, 27
Sau3AI GATC 2 cut(s) 163, 319
ScrFI CCNGG 1 cut(s) 333
SduI GDGCHC 1 cut(s) 260
SetI ASST 1 cut(s) 183
SfaNI GCATC 1 cut(s) 77
SmiMI CAYNNNNRTG 2 cut(s) 85, 306
Sse9I AATT 1 cut(s) 145
SsiI CCGC 3 cut(s) 24, 204, 342
StyD4I CCNGG 1 cut(s) 331
TaqI TCGA 2 cut(s) 162, 193
TasI AATT 1 cut(s) 145
TatI WGTACW 1 cut(s) 246
TauI GCSGC 1 cut(s) 26
TseI GCWGC 2 cut(s) 20, 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.