pycom09g17450

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0013289
Physical Location & Seq
Reverse (-)
17961258 .. 17963060
1803 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g17450.2

Sequence Viewer

Length: 465 bp
ATGCCCGGTTCTACCCCGGACCGTTTATTAACGATTCTTGAAGTCGAGACACCAGCTAGTTTTGTTTTGTGGGTTGTGAGCTTTGTGATGGCTCTGCTGGGTTTGGGTTATGGTTTTCCTCAGTCACCGGGTTATTTGCTTCCTCTTCATCGGAAGCCGAAACCCACATTGAAATTCGCCGCCTTTCGATGCTCTGCGGCAGAACCCAGCAACCAAATAACCTTCAGGACCTGCAAGAATTGCAAAACCCAGTTCGACCCCTCCCTCAATAACCCCCGGGCTTGCCGCTTTCACACCGCTCATTTCGGAGGCGAAACAAAGAGGAAGTTTGAGAGTGTACACACTGGGGGGACCATGAATACTCCTGACTCTGGCAAAGTTGTTCAATACTGGCATTGCTGTGGGTCTGAAGATCCCTTTGACCCTGGATGCACTGCTGCTCCTCACTCGTCCTACGATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

16.97

Weight (kDa)

8.18

Isoelectric Point (pI)

39.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013289)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38060 AT5G38060
fragaria_vesca FvH4_4g24890
prunus_persica Prupe.3G151500_v2.0.a1 Prupe.3G151500_v2.0.a1 Prupe.3G151500_v2.0.a1 Prupe.3G151500_v2.0.a1
pyrus_communis pycom09g17450
rosa_chinensis RchiOBHm_Chr3g0493581
rosa_laevigata RLG00000022702
rosa_multiflora Rmu_sc0000568.1_g000002
rosa_roxburghii Rroxscaffold_6G00391460
rosa_rugosa Rorug03G0262900
rosa_samantha Rh3AG311500 Rh3BG347500 Rh3CG345500 Rh3DG347700
rosa_wichuraiana Rw3G027350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 239
AccBSI CCGCTC 1 cut(s) 299
AciI CCGC 4 cut(s) 180, 197, 286, 297
AclWI GGATC 1 cut(s) 407
AcsI RAATTY 1 cut(s) 173
AcuI CTGAAG 2 cut(s) 208, 429
AfaI GTAC 1 cut(s) 339
AfiI CCNNNNNNNGG 1 cut(s) 371
AgsI TTSAA 3 cut(s) 41, 172, 386
AjnI CCWGG 1 cut(s) 424
AluBI AGCT 2 cut(s) 56, 81
AluI AGCT 2 cut(s) 56, 81
Alw26I GTCTC 1 cut(s) 41
AlwI GGATC 1 cut(s) 407
AlwNI CAGNNNCTG 1 cut(s) 231
Ama87I CYCGRG 1 cut(s) 276
ApeKI GCWGC 1 cut(s) 437
ApoI RAATTY 1 cut(s) 173
AspS9I GGNCC 3 cut(s) 19, 228, 351
AsuC2I CCSGG 5 cut(s) 6, 17, 129, 277, 278
AsuHPI GGTGA 1 cut(s) 117
AvaI CYCGRG 1 cut(s) 276
AvaII GGWCC 3 cut(s) 19, 228, 351
BbvI GCAGC 1 cut(s) 424
BccI CCATC 1 cut(s) 82
BciT130I CCWGG 1 cut(s) 426
BcnI CCSGG 5 cut(s) 6, 17, 129, 277, 278
BcoDI GTCTC 1 cut(s) 41
BfaI CTAG 1 cut(s) 57
BfuAI ACCTGC 1 cut(s) 239
BisI GCNGC 4 cut(s) 180, 198, 286, 438
BlsI GCNGC 4 cut(s) 181, 199, 287, 439
Bme1390I CCNGG 6 cut(s) 6, 17, 129, 277, 278, 426
Bme18I GGWCC 3 cut(s) 19, 228, 351
BmeT110I CYCGRG 1 cut(s) 276
BmgT120I GGNCC 3 cut(s) 19, 228, 351
BmiI GGNNCC 1 cut(s) 352
BmrFI CCNGG 6 cut(s) 6, 17, 129, 277, 278, 426
BmrI ACTGGG 2 cut(s) 244, 354
BmsI GCATC 2 cut(s) 179, 419
BmuI ACTGGG 2 cut(s) 244, 354
BpuMI CCSGG 5 cut(s) 6, 17, 129, 277, 278
BsaJI CCNNGG 4 cut(s) 15, 275, 276, 424
BsaXI ACNNNNNCTCC 2 cut(s) 424, 454
Bsc4I CCNNNNNNNGG 1 cut(s) 371
Bse1I ACTGG 3 cut(s) 250, 349, 395
Bse3DI GCAATG 1 cut(s) 394
BseBI CCWGG 1 cut(s) 426
BseDI CCNNGG 4 cut(s) 15, 275, 276, 424
BseGI GGATG 1 cut(s) 434
BseLI CCNNNNNNNGG 1 cut(s) 371
BseMI GCAATG 1 cut(s) 394
BseMII CTCAG 1 cut(s) 134
BseNI ACTGG 3 cut(s) 250, 349, 395
BseRI GAGGAG 1 cut(s) 432
BseXI GCAGC 1 cut(s) 424
BseYI CCCAGC 2 cut(s) 97, 206
BsiHKCI CYCGRG 1 cut(s) 276
BsiSI CCGG 4 cut(s) 6, 17, 128, 277
BslFI GGGAC 1 cut(s) 364
BslI CCNNNNNNNGG 1 cut(s) 371
BsmAI GTCTC 1 cut(s) 41
BsmFI GGGAC 1 cut(s) 364
BsoBI CYCGRG 1 cut(s) 276
Bsp1407I TGTACA 1 cut(s) 337
Bsp143I GATC 1 cut(s) 412
BspACI CCGC 4 cut(s) 180, 197, 286, 297
BspCNI CTCAG 1 cut(s) 133
BspLI GGNNCC 1 cut(s) 352
BspMI ACCTGC 1 cut(s) 239
BspPI GGATC 1 cut(s) 407
BsrBI CCGCTC 1 cut(s) 299
BsrDI GCAATG 1 cut(s) 394
BsrGI TGTACA 1 cut(s) 337
BsrI ACTGG 3 cut(s) 250, 349, 395
BssECI CCNNGG 4 cut(s) 15, 275, 276, 424
BssMI GATC 1 cut(s) 412
Bst2UI CCWGG 1 cut(s) 426
Bst4CI ACNGT 1 cut(s) 23
Bst6I CTCTTC 1 cut(s) 150
BstAPI GCANNNNNTGC 1 cut(s) 240
BstAUI TGTACA 1 cut(s) 337
BstC8I GCNNGC 1 cut(s) 283
BstDEI CTNAG 1 cut(s) 120
BstF5I GGATG 1 cut(s) 434
BstKTI GATC 1 cut(s) 415
BstMAI GTCTC 1 cut(s) 41
BstMBI GATC 1 cut(s) 412
BstMWI GCNNNNNNNGC 1 cut(s) 240
BstNI CCWGG 1 cut(s) 426
BstSCI CCNGG 6 cut(s) 4, 15, 127, 275, 276, 424
BstV1I GCAGC 1 cut(s) 424
BstX2I RGATCY 1 cut(s) 412
BstYI RGATCY 1 cut(s) 412
BtsCI GGATG 1 cut(s) 434
BtsI GCAGTG 1 cut(s) 432
BtsIMutI CAGTG 2 cut(s) 342, 432
BveI ACCTGC 1 cut(s) 239
Cac8I GCNNGC 1 cut(s) 283
CaiI CAGNNNCTG 1 cut(s) 231
Cfr13I GGNCC 3 cut(s) 19, 228, 351
Cfr9I CCCGGG 1 cut(s) 276
CpoI CGGWCCG 1 cut(s) 19
Csp6I GTAC 1 cut(s) 338
CspI CGGWCCG 1 cut(s) 19
CviAII CATG 1 cut(s) 355
CviJI RGCY 5 cut(s) 56, 81, 92, 157, 281
CviKI_1 RGCY 5 cut(s) 56, 81, 92, 157, 281
CviQI GTAC 1 cut(s) 338
DdeI CTNAG 1 cut(s) 120
DpnI GATC 1 cut(s) 414
DpnII GATC 1 cut(s) 412
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
Eco47I GGWCC 3 cut(s) 19, 228, 351
Eco57I CTGAAG 2 cut(s) 208, 429
Eco88I CYCGRG 1 cut(s) 276
EcoO109I RGGNCCY 1 cut(s) 228
EcoRII CCWGG 1 cut(s) 424
FaeI CATG 1 cut(s) 358
FaiI YATR 2 cut(s) 111, 356
FaqI GGGAC 1 cut(s) 364
FatI CATG 1 cut(s) 354
Fnu4HI GCNGC 4 cut(s) 180, 198, 286, 438
FokI GGATG 1 cut(s) 441
Fsp4HI GCNGC 4 cut(s) 180, 198, 286, 438
FspBI CTAG 1 cut(s) 57
GluI GCNGC 4 cut(s) 180, 198, 286, 438
GsaI CCCAGC 2 cut(s) 101, 210
HapII CCGG 4 cut(s) 6, 17, 128, 277
Hin1II CATG 1 cut(s) 358
HinfI GANTC 2 cut(s) 34, 368
HpaII CCGG 4 cut(s) 6, 17, 128, 277
HphI GGTGA 1 cut(s) 117
Hpy166II GTNNAC 2 cut(s) 338, 340
Hpy188I TCNGA 3 cut(s) 153, 308, 409
Hpy188III TCNNGA 4 cut(s) 38, 46, 226, 365
Hpy8I GTNNAC 2 cut(s) 338, 340
HpyAV CCTTC 1 cut(s) 232
HpyCH4III ACNGT 1 cut(s) 23
HpyCH4V TGCA 3 cut(s) 234, 243, 432
HpyF10VI GCNNNNNNNGC 1 cut(s) 240
HpyF3I CTNAG 1 cut(s) 120
Hsp92II CATG 1 cut(s) 358
Kzo9I GATC 1 cut(s) 412
LmnI GCTCC 1 cut(s) 445
Lsp1109I GCAGC 1 cut(s) 424
LweI GCATC 2 cut(s) 179, 419
MaeI CTAG 1 cut(s) 57
MaeIII GTNAC 1 cut(s) 123
MalI GATC 1 cut(s) 414
MbiI CCGCTC 1 cut(s) 299
MboI GATC 1 cut(s) 412
MboII GAAGA 2 cut(s) 137, 422
MflI RGATCY 1 cut(s) 412
MluCI AATT 2 cut(s) 173, 238
MlyI GAGTC 1 cut(s) 362
MnlI CCTC 7 cut(s) 129, 153, 271, 275, 302, 315, 453
MseI TTAA 1 cut(s) 29
MslI CAYNNNNRTG 1 cut(s) 399
MspI CCGG 4 cut(s) 6, 17, 128, 277
MspR9I CCNGG 6 cut(s) 6, 17, 129, 277, 278, 426
MvaI CCWGG 1 cut(s) 426
MwoI GCNNNNNNNGC 1 cut(s) 240
NciI CCSGG 5 cut(s) 6, 17, 129, 277, 278
NdeII GATC 1 cut(s) 412
NlaIII CATG 1 cut(s) 358
NlaIV GGNNCC 1 cut(s) 352
NmuCI GTSAC 1 cut(s) 123
PfeI GAWTC 1 cut(s) 34
PkrI GCNGC 4 cut(s) 181, 199, 287, 439
PleI GAGTC 1 cut(s) 362
PpsI GAGTC 1 cut(s) 362
PpuMI RGGWCCY 1 cut(s) 228
Psp5II RGGWCCY 1 cut(s) 228
Psp6I CCWGG 1 cut(s) 424
PspFI CCCAGC 2 cut(s) 97, 206
PspGI CCWGG 1 cut(s) 424
PspN4I GGNNCC 1 cut(s) 352
PspPI GGNCC 3 cut(s) 19, 228, 351
PspPPI RGGWCCY 1 cut(s) 228
PstNI CAGNNNCTG 1 cut(s) 231
PsuI RGATCY 1 cut(s) 412
RsaI GTAC 1 cut(s) 339
RsaNI GTAC 1 cut(s) 338
RseI CAYNNNNRTG 1 cut(s) 399
Rsr2I CGGWCCG 1 cut(s) 19
RsrII CGGWCCG 1 cut(s) 19
SaqAI TTAA 1 cut(s) 29
SatI GCNGC 4 cut(s) 180, 198, 286, 438
Sau3AI GATC 1 cut(s) 412
Sau96I GGNCC 3 cut(s) 19, 228, 351
SchI GAGTC 1 cut(s) 362
ScrFI CCNGG 6 cut(s) 6, 17, 129, 277, 278, 426
SetI ASST 4 cut(s) 58, 83, 224, 233
SfaNI GCATC 2 cut(s) 179, 419
SinI GGWCC 3 cut(s) 19, 228, 351
SmaI CCCGGG 1 cut(s) 278
SmiMI CAYNNNNRTG 1 cut(s) 399
Sse9I AATT 2 cut(s) 173, 238
SsiI CCGC 4 cut(s) 180, 197, 286, 297
SspMI CTAG 1 cut(s) 57
StyD4I CCNGG 6 cut(s) 4, 15, 127, 275, 276, 424
TaaI ACNGT 1 cut(s) 23
TaqI TCGA 3 cut(s) 45, 187, 255
TasI AATT 2 cut(s) 173, 238
TatI WGTACW 1 cut(s) 337
TauI GCSGC 3 cut(s) 182, 200, 288
TfiI GAWTC 1 cut(s) 34
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TscAI CASTG 2 cut(s) 349, 439
TseFI GTSAC 1 cut(s) 123
TseI GCWGC 1 cut(s) 437
Tsp45I GTSAC 1 cut(s) 123
TspDTI ATGAA 2 cut(s) 137, 371
TspMI CCCGGG 1 cut(s) 276
TspRI CASTG 2 cut(s) 349, 439
VpaK11BI GGWCC 3 cut(s) 19, 228, 351
XapI RAATTY 1 cut(s) 173
XmaI CCCGGG 1 cut(s) 276
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.