Prupe.3G151500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0013289
Physical Location & Seq
Reverse (-)
16568957 .. 16571749
2793 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G151500.1

Sequence Viewer

Length: 420 bp
ATGATTTTTAATACTGGAGAAGGTGGTAATTGTTTTGTGGGTTGTGAAGTTGTGATGGCTTTGGCTTTGGGTTTTGCTCATTCACCGAGTCCTTTGCTTTCTCTTCATCAGAAGCCAAAACACACATTGAGATTGGCTGCATTTCGATGCTCAGCGACGCCTAGCAATGAAATAATCCTCAGGACTTGCAAGAATTGCAAAACCCAATTCGACCCTTCCATCAATAACCCCCGGGCTTGTCGCTTTCACACAGCTCATTTCGGAGGAGAAACAAAGAGGAAGTTTGAGAGTGTGCACACTGGGGGCACCATGAACACTCCTGACTCTGGAAAAGTTGTTCAATACTGGCATTGTTGTGGATCTGAAGATCCCTTTGACCCTGGATGCACAGCTGCTCCTCACTCATCCTATGATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

15.15

Weight (kDa)

7.61

Isoelectric Point (pI)

37.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013289)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38060 AT5G38060
fragaria_vesca FvH4_4g24890
prunus_persica Prupe.3G151500_v2.0.a1 Prupe.3G151500_v2.0.a1 Prupe.3G151500_v2.0.a1 Prupe.3G151500_v2.0.a1
pyrus_communis pycom09g17450
rosa_chinensis RchiOBHm_Chr3g0493581
rosa_laevigata RLG00000022702
rosa_multiflora Rmu_sc0000568.1_g000002
rosa_roxburghii Rroxscaffold_6G00391460
rosa_rugosa Rorug03G0262900
rosa_samantha Rh3AG311500 Rh3BG347500 Rh3CG345500 Rh3DG347700
rosa_wichuraiana Rw3G027350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 305
AclWI GGATC 2 cut(s) 362, 367
AcuI CTGAAG 1 cut(s) 384
AcyI GRCGYC 1 cut(s) 158
AfiI CCNNNNNNNGG 1 cut(s) 326
AgsI TTSAA 1 cut(s) 341
AjnI CCWGG 1 cut(s) 379
AloI GAACNNNNNNTCC 2 cut(s) 321, 353
AluBI AGCT 2 cut(s) 254, 392
AluI AGCT 2 cut(s) 254, 392
Alw21I GWGCWC 1 cut(s) 297
Alw44I GTGCAC 1 cut(s) 293
AlwI GGATC 2 cut(s) 362, 367
Ama87I CYCGRG 1 cut(s) 231
ApaLI GTGCAC 1 cut(s) 293
ApeKI GCWGC 2 cut(s) 137, 392
AsuC2I CCSGG 2 cut(s) 232, 233
AsuHPI GGTGA 1 cut(s) 75
AvaI CYCGRG 1 cut(s) 231
AxyI CCTNAGG 1 cut(s) 179
BaeGI GKGCMC 2 cut(s) 297, 308
BanI GGYRCC 1 cut(s) 305
Bbv12I GWGCWC 1 cut(s) 297
BbvI GCAGC 2 cut(s) 124, 379
BccI CCATC 2 cut(s) 49, 227
BcgI CGANNNNNNTGC 2 cut(s) 76, 110
BciT130I CCWGG 1 cut(s) 381
BcnI CCSGG 2 cut(s) 232, 233
BfaI CTAG 1 cut(s) 162
BisI GCNGC 2 cut(s) 138, 393
BlpI GCTNAGC 1 cut(s) 151
BlsI GCNGC 2 cut(s) 139, 394
Bme1390I CCNGG 3 cut(s) 232, 233, 381
BmeT110I CYCGRG 1 cut(s) 231
BmiI GGNNCC 1 cut(s) 307
BmrFI CCNGG 3 cut(s) 232, 233, 381
BmrI ACTGGG 1 cut(s) 309
BmsI GCATC 2 cut(s) 137, 374
BmuI ACTGGG 1 cut(s) 309
BpmI CTGGAG 1 cut(s) 36
Bpu1102I GCTNAGC 1 cut(s) 151
BpuMI CCSGG 2 cut(s) 232, 233
BsaHI GRCGYC 1 cut(s) 158
BsaJI CCNNGG 3 cut(s) 230, 231, 379
BsaXI ACNNNNNCTCC 2 cut(s) 379, 409
Bsc4I CCNNNNNNNGG 1 cut(s) 326
Bse1I ACTGG 3 cut(s) 19, 304, 350
Bse21I CCTNAGG 1 cut(s) 179
Bse3DI GCAATG 1 cut(s) 172
BseBI CCWGG 1 cut(s) 381
BseDI CCNNGG 3 cut(s) 230, 231, 379
BseGI GGATG 2 cut(s) 389, 404
BseLI CCNNNNNNNGG 1 cut(s) 326
BseMI GCAATG 1 cut(s) 172
BseMII CTCAG 2 cut(s) 165, 193
BseNI ACTGG 3 cut(s) 19, 304, 350
BseRI GAGGAG 2 cut(s) 279, 387
BseSI GKGCMC 2 cut(s) 297, 308
BseXI GCAGC 2 cut(s) 124, 379
BshNI GGYRCC 1 cut(s) 305
BsiHKAI GWGCWC 1 cut(s) 297
BsiHKCI CYCGRG 1 cut(s) 231
BsiSI CCGG 1 cut(s) 232
BslI CCNNNNNNNGG 1 cut(s) 326
BsoBI CYCGRG 1 cut(s) 231
Bsp1286I GDGCHC 2 cut(s) 297, 308
Bsp143I GATC 2 cut(s) 359, 367
Bsp1720I GCTNAGC 1 cut(s) 151
BspCNI CTCAG 2 cut(s) 164, 192
BspLI GGNNCC 1 cut(s) 307
BspPI GGATC 2 cut(s) 362, 367
BspT107I GGYRCC 1 cut(s) 305
BsrDI GCAATG 1 cut(s) 172
BsrI ACTGG 3 cut(s) 19, 304, 350
BssECI CCNNGG 3 cut(s) 230, 231, 379
BssMI GATC 2 cut(s) 359, 367
BssNI GRCGYC 1 cut(s) 158
Bst2UI CCWGG 1 cut(s) 381
Bst6I CTCTTC 1 cut(s) 108
BstACI GRCGYC 1 cut(s) 158
BstAPI GCANNNNNTGC 1 cut(s) 195
BstDEI CTNAG 2 cut(s) 151, 179
BstF5I GGATG 2 cut(s) 389, 404
BstKTI GATC 2 cut(s) 362, 370
BstMBI GATC 2 cut(s) 359, 367
BstMWI GCNNNNNNNGC 1 cut(s) 195
BstNI CCWGG 1 cut(s) 381
BstSCI CCNGG 3 cut(s) 230, 231, 379
BstSLI GKGCMC 2 cut(s) 297, 308
BstV1I GCAGC 2 cut(s) 124, 379
BstX2I RGATCY 2 cut(s) 359, 367
BstYI RGATCY 2 cut(s) 359, 367
Bsu36I CCTNAGG 1 cut(s) 179
BtsCI GGATG 2 cut(s) 389, 404
BtsIMutI CAGTG 1 cut(s) 297
Cfr9I CCCGGG 1 cut(s) 231
CseI GACGC 1 cut(s) 166
CviAII CATG 1 cut(s) 310
CviJI RGCY 7 cut(s) 59, 65, 115, 137, 236, 254, 392
CviKI_1 RGCY 7 cut(s) 59, 65, 115, 137, 236, 254, 392
DdeI CTNAG 2 cut(s) 151, 179
DpnI GATC 2 cut(s) 361, 369
DpnII GATC 2 cut(s) 359, 367
Eam1104I CTCTTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 108
Eco57I CTGAAG 1 cut(s) 384
Eco81I CCTNAGG 1 cut(s) 179
Eco88I CYCGRG 1 cut(s) 231
EcoRII CCWGG 1 cut(s) 379
FaeI CATG 1 cut(s) 313
FaiI YATR 2 cut(s) 311, 411
FatI CATG 1 cut(s) 309
Fnu4HI GCNGC 2 cut(s) 138, 393
FokI GGATG 2 cut(s) 391, 396
Fsp4HI GCNGC 2 cut(s) 138, 393
FspBI CTAG 1 cut(s) 162
GluI GCNGC 2 cut(s) 138, 393
GsuI CTGGAG 1 cut(s) 36
HapII CCGG 1 cut(s) 232
HgaI GACGC 1 cut(s) 166
Hin1I GRCGYC 1 cut(s) 158
Hin1II CATG 1 cut(s) 313
HinfI GANTC 2 cut(s) 88, 323
HpaII CCGG 1 cut(s) 232
HphI GGTGA 1 cut(s) 75
Hpy166II GTNNAC 1 cut(s) 295
Hpy188I TCNGA 3 cut(s) 111, 263, 364
Hpy188III TCNNGA 3 cut(s) 181, 320, 327
Hpy8I GTNNAC 1 cut(s) 295
Hpy99I CGWCG 1 cut(s) 160
HpyAV CCTTC 2 cut(s) 14, 225
HpyCH4V TGCA 5 cut(s) 140, 189, 198, 295, 387
HpyF10VI GCNNNNNNNGC 1 cut(s) 195
HpyF3I CTNAG 2 cut(s) 151, 179
Hsp92I GRCGYC 1 cut(s) 158
Hsp92II CATG 1 cut(s) 313
Kzo9I GATC 2 cut(s) 359, 367
LmnI GCTCC 1 cut(s) 400
LpnPI CCDG 8 cut(s) 166, 245, 285, 312, 331, 333, 366, 393
Lsp1109I GCAGC 2 cut(s) 124, 379
LweI GCATC 2 cut(s) 137, 374
MaeI CTAG 1 cut(s) 162
MalI GATC 2 cut(s) 361, 369
MboI GATC 2 cut(s) 359, 367
MboII GAAGA 2 cut(s) 95, 377
MflI RGATCY 2 cut(s) 359, 367
MhlI GDGCHC 2 cut(s) 297, 308
MluCI AATT 3 cut(s) 28, 193, 206
MlyI GAGTC 2 cut(s) 97, 317
MnlI CCTC 4 cut(s) 188, 257, 270, 408
MseI TTAA 1 cut(s) 9
MslI CAYNNNNRTG 2 cut(s) 145, 354
MspA1I CMGCKG 1 cut(s) 392
MspI CCGG 1 cut(s) 232
MspR9I CCNGG 3 cut(s) 232, 233, 381
MvaI CCWGG 1 cut(s) 381
MwoI GCNNNNNNNGC 1 cut(s) 195
NciI CCSGG 2 cut(s) 232, 233
NdeII GATC 2 cut(s) 359, 367
NlaIII CATG 1 cut(s) 313
NlaIV GGNNCC 1 cut(s) 307
PkrI GCNGC 2 cut(s) 139, 394
PleI GAGTC 2 cut(s) 96, 317
PpsI GAGTC 2 cut(s) 96, 317
Psp6I CCWGG 1 cut(s) 379
PspGI CCWGG 1 cut(s) 379
PspN4I GGNNCC 1 cut(s) 307
PsuI RGATCY 2 cut(s) 359, 367
PvuII CAGCTG 1 cut(s) 392
RseI CAYNNNNRTG 2 cut(s) 145, 354
SaqAI TTAA 1 cut(s) 9
SatI GCNGC 2 cut(s) 138, 393
Sau3AI GATC 2 cut(s) 359, 367
SchI GAGTC 2 cut(s) 97, 317
ScrFI CCNGG 3 cut(s) 232, 233, 381
SduI GDGCHC 2 cut(s) 297, 308
SetI ASST 3 cut(s) 25, 256, 394
SfaNI GCATC 2 cut(s) 137, 374
SmaI CCCGGG 1 cut(s) 233
SmiMI CAYNNNNRTG 2 cut(s) 145, 354
Sse9I AATT 3 cut(s) 28, 193, 206
SspMI CTAG 1 cut(s) 162
StyD4I CCNGG 3 cut(s) 230, 231, 379
TaqI TCGA 2 cut(s) 145, 210
TasI AATT 3 cut(s) 28, 193, 206
Tru1I TTAA 1 cut(s) 9
Tru9I TTAA 1 cut(s) 9
TscAI CASTG 1 cut(s) 304
TseI GCWGC 2 cut(s) 137, 392
TspDTI ATGAA 3 cut(s) 95, 183, 326
TspMI CCCGGG 1 cut(s) 231
TspRI CASTG 1 cut(s) 304
VneI GTGCAC 1 cut(s) 293
XmaI CCCGGG 1 cut(s) 231
XspI CTAG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.