Rorug03G0262900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0013289
Physical Location & Seq
Forward (+)
25482491 .. 25482808
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0262900.1

Sequence Viewer

Length: 318 bp
ATGGGGATGTTCCAGCGAGCATGGTGGCTCAATGGTCGATACACCGTCCAGAAGCATGATGATCGTTTTCTCTTCACCTTGTCGGACCTAACTGATCGTAACCGGATTCTCAGGGGTGGTCCGTGGGGTTTTGATAGGGCTCCGGTGGTTTTGGCACCATATGATGGAGTTGGAGCAATCAAAGATGTGCCGCTTACTACACTTGCTTTCTGGATCAATGACATGACCCGCCCCGGATTTCACCCCGAAATCCTAAATGGCCATGCAGGGCCCACCTTAGAAGAAATTCTACCAAAAATTTGGCGGAACTTCCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

12.12

Weight (kDa)

8.2

Isoelectric Point (pI)

32.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 4 - 54 6.1e-06 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013289)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38060 AT5G38060
fragaria_vesca FvH4_4g24890
prunus_persica Prupe.3G151500_v2.0.a1 Prupe.3G151500_v2.0.a1 Prupe.3G151500_v2.0.a1 Prupe.3G151500_v2.0.a1
pyrus_communis pycom09g17450
rosa_chinensis RchiOBHm_Chr3g0493581
rosa_laevigata RLG00000022702
rosa_multiflora Rmu_sc0000568.1_g000002
rosa_roxburghii Rroxscaffold_6G00391460
rosa_rugosa Rorug03G0262900
rosa_samantha Rh3AG311500 Rh3BG347500 Rh3CG345500 Rh3DG347700
rosa_wichuraiana Rw3G027350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 154
AccB7I CCANNNNNTGG 1 cut(s) 164
AciI CCGC 3 cut(s) 191, 229, 304
AclWI GGATC 1 cut(s) 221
AcoI YGGCCR 1 cut(s) 259
AcsI RAATTY 2 cut(s) 285, 297
AfiI CCNNNNNNNGG 1 cut(s) 164
AlwI GGATC 1 cut(s) 221
AoxI GGCC 2 cut(s) 259, 269
ApaI GGGCCC 1 cut(s) 273
ApoI RAATTY 2 cut(s) 285, 297
Asp700I GAANNNNTTC 1 cut(s) 285
AspS9I GGNCC 4 cut(s) 85, 119, 269, 270
AsuC2I CCSGG 1 cut(s) 234
AsuHPI GGTGA 2 cut(s) 67, 233
AvaII GGWCC 2 cut(s) 85, 119
BaeGI GKGCMC 1 cut(s) 273
BalI TGGCCA 1 cut(s) 261
BanI GGYRCC 1 cut(s) 154
BanII GRGCYC 2 cut(s) 142, 273
BarI GAAGNNNNNNTAC 2 cut(s) 273, 305
BccI CCATC 1 cut(s) 158
BcgI CGANNNNNNTGC 2 cut(s) 44, 78
BcnI CCSGG 1 cut(s) 234
BisI GCNGC 1 cut(s) 191
BlsI GCNGC 1 cut(s) 192
Bme1390I CCNGG 1 cut(s) 234
Bme18I GGWCC 2 cut(s) 85, 119
BmgT120I GGNCC 4 cut(s) 85, 119, 269, 270
BmiI GGNNCC 3 cut(s) 141, 156, 271
BmrFI CCNGG 1 cut(s) 234
BpuMI CCSGG 1 cut(s) 234
BsaJI CCNNGG 2 cut(s) 122, 232
BsaWI WCCGGW 2 cut(s) 102, 142
Bsc4I CCNNNNNNNGG 1 cut(s) 164
BseDI CCNNGG 2 cut(s) 122, 232
BseGI GGATG 1 cut(s) 12
BseLI CCNNNNNNNGG 1 cut(s) 164
BseMII CTCAG 1 cut(s) 124
BseSI GKGCMC 1 cut(s) 273
BshFI GGCC 2 cut(s) 261, 271
BshNI GGYRCC 1 cut(s) 154
BsiSI CCGG 3 cut(s) 103, 143, 234
BslI CCNNNNNNNGG 1 cut(s) 164
BsnI GGCC 2 cut(s) 261, 271
Bsp120I GGGCCC 1 cut(s) 269
Bsp1286I GDGCHC 2 cut(s) 142, 273
Bsp143I GATC 3 cut(s) 61, 94, 213
BspACI CCGC 3 cut(s) 191, 229, 304
BspANI GGCC 2 cut(s) 261, 271
BspCNI CTCAG 1 cut(s) 123
BspLI GGNNCC 3 cut(s) 141, 156, 271
BspPI GGATC 1 cut(s) 221
BspT107I GGYRCC 1 cut(s) 154
BssECI CCNNGG 2 cut(s) 122, 232
BssMI GATC 3 cut(s) 61, 94, 213
Bst4CI ACNGT 1 cut(s) 46
Bst6I CTCTTC 1 cut(s) 77
BstC8I GCNNGC 1 cut(s) 18
BstDEI CTNAG 2 cut(s) 110, 277
BstDSI CCRYGG 1 cut(s) 122
BstF5I GGATG 1 cut(s) 12
BstKTI GATC 3 cut(s) 64, 97, 216
BstMBI GATC 3 cut(s) 61, 94, 213
BstSCI CCNGG 1 cut(s) 232
BstSLI GKGCMC 1 cut(s) 273
BstXI CCANNNNNNTGG 1 cut(s) 300
BsuRI GGCC 2 cut(s) 261, 271
BtgI CCRYGG 1 cut(s) 122
BtsCI GGATG 1 cut(s) 12
Cac8I GCNNGC 1 cut(s) 18
Cfr13I GGNCC 4 cut(s) 85, 119, 269, 270
CviAII CATG 4 cut(s) 21, 56, 223, 263
CviJI RGCY 4 cut(s) 28, 140, 261, 271
CviKI_1 RGCY 4 cut(s) 28, 140, 261, 271
DdeI CTNAG 2 cut(s) 110, 277
DpnI GATC 3 cut(s) 63, 96, 215
DpnII GATC 3 cut(s) 61, 94, 213
EaeI YGGCCR 1 cut(s) 259
Eam1104I CTCTTC 1 cut(s) 77
EarI CTCTTC 1 cut(s) 77
Eco24I GRGCYC 2 cut(s) 142, 273
Eco47I GGWCC 2 cut(s) 85, 119
EcoO109I RGGNCCY 1 cut(s) 269
EcoT38I GRGCYC 2 cut(s) 142, 273
FaeI CATG 4 cut(s) 24, 59, 226, 266
FaiI YATR 6 cut(s) 22, 57, 160, 162, 224, 264
FatI CATG 4 cut(s) 20, 55, 222, 262
FauI CCCGC 1 cut(s) 236
FauNDI CATATG 1 cut(s) 160
Fnu4HI GCNGC 1 cut(s) 191
FokI GGATG 1 cut(s) 19
FriOI GRGCYC 2 cut(s) 142, 273
Fsp4HI GCNGC 1 cut(s) 191
GluI GCNGC 1 cut(s) 191
HaeIII GGCC 2 cut(s) 261, 271
HapII CCGG 3 cut(s) 103, 143, 234
Hin1II CATG 4 cut(s) 24, 59, 226, 266
HinfI GANTC 1 cut(s) 106
HpaII CCGG 3 cut(s) 103, 143, 234
HphI GGTGA 2 cut(s) 67, 233
Hpy188I TCNGA 1 cut(s) 85
Hpy188III TCNNGA 2 cut(s) 49, 211
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4V TGCA 1 cut(s) 266
HpyF3I CTNAG 2 cut(s) 110, 277
Hsp92II CATG 4 cut(s) 24, 59, 226, 266
Kzo9I GATC 3 cut(s) 61, 94, 213
LmnI GCTCC 2 cut(s) 145, 173
LpnPI CCDG 8 cut(s) 26, 62, 97, 116, 156, 196, 247, 252
MaeIII GTNAC 1 cut(s) 98
MalI GATC 3 cut(s) 63, 96, 215
MboI GATC 3 cut(s) 61, 94, 213
MboII GAAGA 2 cut(s) 64, 293
MhlI GDGCHC 2 cut(s) 142, 273
MlsI TGGCCA 1 cut(s) 261
MluCI AATT 2 cut(s) 285, 297
MluNI TGGCCA 1 cut(s) 261
MmeI TCCRAC 2 cut(s) 63, 151
Mox20I TGGCCA 1 cut(s) 261
MroXI GAANNNNTTC 1 cut(s) 285
MscI TGGCCA 1 cut(s) 261
Msp20I TGGCCA 1 cut(s) 261
MspI CCGG 3 cut(s) 103, 143, 234
MspR9I CCNGG 1 cut(s) 234
NciI CCSGG 1 cut(s) 234
NdeI CATATG 1 cut(s) 160
NdeII GATC 3 cut(s) 61, 94, 213
NlaIII CATG 4 cut(s) 24, 59, 226, 266
NlaIV GGNNCC 3 cut(s) 141, 156, 271
PdmI GAANNNNTTC 1 cut(s) 285
PfeI GAWTC 1 cut(s) 106
PflMI CCANNNNNTGG 1 cut(s) 164
PkrI GCNGC 1 cut(s) 192
PspN4I GGNNCC 3 cut(s) 141, 156, 271
PspOMI GGGCCC 1 cut(s) 269
PspPI GGNCC 4 cut(s) 85, 119, 269, 270
SatI GCNGC 1 cut(s) 191
Sau3AI GATC 3 cut(s) 61, 94, 213
Sau96I GGNCC 4 cut(s) 85, 119, 269, 270
ScrFI CCNGG 1 cut(s) 234
SduI GDGCHC 2 cut(s) 142, 273
SetI ASST 3 cut(s) 80, 90, 278
SinI GGWCC 2 cut(s) 85, 119
Sse9I AATT 2 cut(s) 285, 297
SsiI CCGC 3 cut(s) 191, 229, 304
StyD4I CCNGG 1 cut(s) 232
TaaI ACNGT 1 cut(s) 46
TaqI TCGA 1 cut(s) 37
TasI AATT 2 cut(s) 285, 297
TauI GCSGC 1 cut(s) 193
TfiI GAWTC 1 cut(s) 106
TspGWI ACGGA 1 cut(s) 111
Van91I CCANNNNNTGG 1 cut(s) 164
VpaK11BI GGWCC 2 cut(s) 85, 119
XapI RAATTY 2 cut(s) 285, 297
XmnI GAANNNNTTC 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.