FvH4_4g30430

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0016835
Physical Location & Seq
Reverse (-)
30057525 .. 30059129
1605 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g30430.t1

Sequence Viewer

Length: 1605 bp
ATGTCATACAGTAGCAGCAGTACAAGATGCCTCCAACTGTTGGAGAAGTGCAGGAACCTAAAGCACCTCCACCAAGCTCATGCCCAAGTCTTCACCTCTGGCCTTGCCCACAACACCTTTGCCTTAAGCAGACTCTTGGCCTTGTGCTCACACCCACATCATGGTTCCCTCTCCTATGCCCTCAAACTCTTCCACCACATCCCACAACCCACTCTTTGCATCTACAACACCCTCTTAAAAACCCTCCTGCTCAGAAATGAACTCACCCAAACCCTAAATGTGTACACCCACATGTTGCAGACTGGGACTTACCCTGACAATTATACCCTCCCTTATCTCCTAAAGGCCTCTGCTAAACTCCAAAGCTACTCTCTTGGAGAGGTGGTTCATGGGTGTAGCTTCAAATTGGGTTTTGAGTCTGATATCTATGTGGGTAACTCTTTGATGGTTATGTACTGTGCGTTTGATAATGTGAGAGGTGCACGCTGCGTGTTCGATGAAATGCGTAGGCTAAGTGCTGTGTCGTGGACGGTGATGATTTCTGGGTATGCAAAGGTGGGTGATGTTGACACTGCTAGGGTGTTCTTTGATGAGGCTCCTGTGAGAGATAGAGGAATATGGGGTGCCATGATTTCTGGGTATGTGCAGAACAATTGTTTCAAGGAAGGTTTGTATTTGTTCCAGTTGATGCAGGTTAATGATTTAGAGCCTGATGAGGCTGTTTTTGTTAGTGTTCTATGTGCTTGCGCTCATTTGGGAGATTTGGATGTTGGGATTTGGATTCACTCGTATTTGAAGAGGGTCGGGTTGCCATTGAGTGTTAGAGTTGGGACTGGTCTTATTGACATGTATGCGAAATGTGGGAAGTTGGGTTTAGCTAGAGGAGTGTTTTATGATATGCAGCAGAGGGACACGGTTTGCTGGAATGCTATGATATCAGGAATGGCAATGCATGGGGATGGAGAAGGTGCAGTGGAGCTGTTTAGAGAGATGGAGGCGGCTGGGATCAGGCCGGATGATATCACCTTCATTGCTGTGTTTACTGCTTGTAGTTATGCAGGAATGGCATATGAAGGCATGAGGGTGTTGGATAAAATGTGTAATGTATACAATATTAGGCCGAAAAGTGAACACTATGGATGCATTGTCGACCTGCTAAGTCGTGCTGGTCTCTTTGAAGAAGCAAGGGAAATAATCGAAAGAATTCCCAGTTCAAGCAACCCTTCTGAAGAAGCAGTAGCTTGGAGAGCTTTTCTCAGCGCTTGTTGCAATCATGGACAGGCTGAACTAACTGAGGTTGCTGCAGAGAAACTGTTTCGGCTAGAGCGTCACAGTGGGGTGTATGTGTTGCTTTCAAATTTATATGCAGCAGCTGGGAAACATGGAGATGCCAGAAGAATGCGGAATTTGATGAGAAATAGAGGAGTAGATAAGGTACCGGGTTGCAGTTCGGTTGAGATTGATAGAGCAGTTTATGAATTCATTGCAGGGGAGAAAACACACCCTCAAATGGAAGAAATTCAGTTAGTTTTGCAGACTATAAACAAGCAAATAGAACTTATTGGCAGCAATCATCCGGGTTTGTACCTAATTGATAAGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

535

Amino Acids

59.7

Weight (kDa)

6.57

Isoelectric Point (pI)

32.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 303 - 350 2.8e-12 PPR repeat family
PPR PF01535 306 - 336 7.9e-08 PPR repeat
E_motif PF20431 425 - 486 8.4e-15 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016835)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g30430
malus_domestica MD16G1063600.v1.1
prunus_persica Prupe.1G282900_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0438721
rosa_laevigata RLG00000006334
rosa_multiflora Rmu_sc0000144.1_g000047 Rmu_sc0002505.1_g000006
rosa_roxburghii Rroxscaffold_5G00379760
rosa_rugosa Rorug04G0312800
rosa_samantha Rh4AG363400 Rh4BG374800 Rh4CG389000
rosa_wichuraiana Rw0G007190 Rw0G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 682, 1161
Acc65I GGTACC 1 cut(s) 1435
AccB1I GGYRCC 2 cut(s) 623, 1435
AccB7I CCANNNNNTGG 2 cut(s) 40, 161
AccI GTMKAC 2 cut(s) 1107, 1149
AciI CCGC 2 cut(s) 998, 1402
AclWI GGATC 1 cut(s) 1013
AcsI RAATTY 5 cut(s) 1203, 1357, 1405, 1478, 1518
AcuI CTGAAG 1 cut(s) 1248
AfaI GTAC 5 cut(s) 22, 284, 455, 1437, 1586
AfeI AGCGCT 1 cut(s) 1261
AfiI CCNNNNNNNGG 3 cut(s) 40, 161, 1510
AflII CTTAAG 1 cut(s) 124
AflIII ACRYGT 2 cut(s) 291, 846
AgsI TTSAA 6 cut(s) 403, 661, 796, 1178, 1215, 1356
AloI GAACNNNNNNTCC 2 cut(s) 369, 401
AluBI AGCT 8 cut(s) 77, 366, 399, 878, 979, 1241, 1250, 1373
AluI AGCT 8 cut(s) 77, 366, 399, 878, 979, 1241, 1250, 1373
Alw21I GWGCWC 2 cut(s) 149, 484
Alw26I GTCTC 1 cut(s) 1175
Alw44I GTGCAC 1 cut(s) 480
AlwI GGATC 1 cut(s) 1013
AlwNI CAGNNNCTG 1 cut(s) 1373
Aor51HI AGCGCT 1 cut(s) 1261
AoxI GGCC 5 cut(s) 100, 138, 345, 1010, 1118
ApaLI GTGCAC 1 cut(s) 480
ApeKI GCWGC 7 cut(s) 15, 486, 901, 1301, 1367, 1370, 1566
ApoI RAATTY 5 cut(s) 1203, 1357, 1405, 1478, 1518
Asp700I GAANNNNTTC 2 cut(s) 1203, 1518
Asp718I GGTACC 1 cut(s) 1435
AspLEI GCGC 2 cut(s) 749, 1262
AsuC2I CCSGG 2 cut(s) 1440, 1578
AsuHPI GGTGA 5 cut(s) 85, 256, 544, 572, 1015
BaeGI GKGCMC 1 cut(s) 484
BanI GGYRCC 2 cut(s) 623, 1435
BbsI GAAGAC 1 cut(s) 82
Bbv12I GWGCWC 2 cut(s) 149, 484
BbvI GCAGC 7 cut(s) 27, 473, 913, 1288, 1379, 1382, 1578
BccI CCATC 3 cut(s) 439, 953, 985
BcnI CCSGG 2 cut(s) 1440, 1578
BcoDI GTCTC 1 cut(s) 1175
BfaI CTAG 3 cut(s) 576, 879, 1322
BfmI CTRYAG 1 cut(s) 1302
BfoI RGCGCY 1 cut(s) 1263
BfrI CTTAAG 1 cut(s) 124
BfuAI ACCTGC 2 cut(s) 682, 1161
BisI GCNGC 8 cut(s) 16, 487, 902, 999, 1302, 1368, 1371, 1567
BlsI GCNGC 8 cut(s) 17, 488, 903, 1000, 1303, 1369, 1372, 1568
Bme1390I CCNGG 2 cut(s) 1440, 1578
BmiI GGNNCC 5 cut(s) 56, 166, 597, 625, 1437
BmrFI CCNGG 2 cut(s) 1440, 1578
BmrI ACTGGG 2 cut(s) 312, 1203
BmsI GCATC 5 cut(s) 17, 228, 678, 1130, 1378
BmuI ACTGGG 2 cut(s) 312, 1203
BpiI GAAGAC 1 cut(s) 82
BplI GAGNNNNNCTC 2 cut(s) 1239, 1271
BpuMI CCSGG 2 cut(s) 1440, 1578
BsaI GGTCTC 1 cut(s) 1175
BsaXI ACNNNNNCTCC 2 cut(s) 369, 399
Bsc4I CCNNNNNNNGG 3 cut(s) 40, 161, 1510
Bse1I ACTGG 4 cut(s) 307, 682, 838, 1209
Bse3DI GCAATG 3 cut(s) 954, 1029, 1482
BseGI GGATG 6 cut(s) 198, 772, 964, 1021, 1145, 1573
BseLI CCNNNNNNNGG 3 cut(s) 40, 161, 1510
BseMI GCAATG 3 cut(s) 954, 1029, 1482
BseMII CTCAG 3 cut(s) 265, 1270, 1284
BseNI ACTGG 4 cut(s) 307, 682, 838, 1209
BseRI GAGGAG 2 cut(s) 897, 1437
BseSI GKGCMC 1 cut(s) 484
BseXI GCAGC 7 cut(s) 27, 473, 913, 1288, 1379, 1382, 1578
BseYI CCCAGC 2 cut(s) 1001, 1373
BsgI GTGCAG 3 cut(s) 70, 665, 990
BshFI GGCC 5 cut(s) 102, 140, 347, 1012, 1120
BshNI GGYRCC 2 cut(s) 623, 1435
BsiHKAI GWGCWC 2 cut(s) 149, 484
BsiSI CCGG 3 cut(s) 1013, 1439, 1577
BslFI GGGAC 3 cut(s) 319, 844, 923
BslI CCNNNNNNNGG 3 cut(s) 40, 161, 1510
BsmAI GTCTC 1 cut(s) 1175
BsmFI GGGAC 3 cut(s) 319, 844, 923
BsmI GAATGC 2 cut(s) 931, 1404
BsnI GGCC 5 cut(s) 102, 140, 347, 1012, 1120
Bso31I GGTCTC 1 cut(s) 1175
Bsp1286I GDGCHC 2 cut(s) 149, 484
Bsp1407I TGTACA 1 cut(s) 282
Bsp143I GATC 1 cut(s) 1005
BspACI CCGC 2 cut(s) 998, 1402
BspANI GGCC 5 cut(s) 102, 140, 347, 1012, 1120
BspCNI CTCAG 3 cut(s) 264, 1269, 1285
BspLI GGNNCC 5 cut(s) 56, 166, 597, 625, 1437
BspMAI CTGCAG 1 cut(s) 1306
BspMI ACCTGC 2 cut(s) 682, 1161
BspPI GGATC 1 cut(s) 1013
BspT107I GGYRCC 2 cut(s) 623, 1435
BspTI CTTAAG 1 cut(s) 124
BspTNI GGTCTC 1 cut(s) 1175
BsrDI GCAATG 3 cut(s) 954, 1029, 1482
BsrGI TGTACA 1 cut(s) 282
BsrI ACTGG 4 cut(s) 307, 682, 838, 1209
BssMI GATC 1 cut(s) 1005
BssNAI GTATAC 1 cut(s) 1108
Bst1107I GTATAC 1 cut(s) 1108
Bst4CI ACNGT 7 cut(s) 11, 39, 458, 532, 916, 1314, 1334
Bst6I CTCTTC 2 cut(s) 194, 791
BstAFI CTTAAG 1 cut(s) 124
BstAUI TGTACA 1 cut(s) 282
BstC8I GCNNGC 2 cut(s) 484, 745
BstDEI CTNAG 5 cut(s) 251, 512, 1157, 1256, 1293
BstF5I GGATG 6 cut(s) 198, 772, 964, 1021, 1145, 1573
BstH2I RGCGCY 1 cut(s) 1263
BstHHI GCGC 2 cut(s) 749, 1262
BstKTI GATC 1 cut(s) 1008
BstMAI GTCTC 1 cut(s) 1175
BstMBI GATC 1 cut(s) 1005
BstMWI GCNNNNNNNGC 3 cut(s) 1064, 1247, 1266
BstNSI RCATGY 2 cut(s) 295, 850
BstSCI CCNGG 2 cut(s) 1438, 1576
BstSFI CTRYAG 1 cut(s) 1302
BstSLI GKGCMC 1 cut(s) 484
BstV1I GCAGC 7 cut(s) 27, 473, 913, 1288, 1379, 1382, 1578
BstV2I GAAGAC 1 cut(s) 82
BstZ17I GTATAC 1 cut(s) 1108
BsuRI GGCC 5 cut(s) 102, 140, 347, 1012, 1120
BtsCI GGATG 6 cut(s) 198, 772, 964, 1021, 1145, 1573
BtsI GCAGTG 2 cut(s) 570, 978
BtsIMutI CAGTG 3 cut(s) 570, 978, 1339
BveI ACCTGC 2 cut(s) 682, 1161
Cac8I GCNNGC 2 cut(s) 484, 745
CaiI CAGNNNCTG 1 cut(s) 1373
CfoI GCGC 2 cut(s) 749, 1262
CseI GACGC 1 cut(s) 1316
Csp6I GTAC 5 cut(s) 21, 283, 454, 1436, 1585
CviQI GTAC 5 cut(s) 21, 283, 454, 1436, 1585
DdeI CTNAG 5 cut(s) 251, 512, 1157, 1256, 1293
DpnI GATC 1 cut(s) 1007
DpnII GATC 1 cut(s) 1005
Eam1104I CTCTTC 2 cut(s) 194, 791
EarI CTCTTC 2 cut(s) 194, 791
Eco147I AGGCCT 1 cut(s) 347
Eco31I GGTCTC 1 cut(s) 1175
Eco32I GATATC 3 cut(s) 424, 936, 1021
Eco47III AGCGCT 1 cut(s) 1261
Eco57I CTGAAG 1 cut(s) 1248
EcoRI GAATTC 2 cut(s) 1203, 1478
EcoRV GATATC 3 cut(s) 424, 936, 1021
EcoT22I ATGCAT 2 cut(s) 954, 1145
FalI AAGNNNNNCTT 2 cut(s) 1207, 1239
FaqI GGGAC 3 cut(s) 319, 844, 923
FauNDI CATATG 1 cut(s) 1069
FblI GTMKAC 2 cut(s) 1107, 1149
Fnu4HI GCNGC 8 cut(s) 16, 487, 902, 999, 1302, 1368, 1371, 1567
FokI GGATG 6 cut(s) 185, 779, 971, 1028, 1152, 1560
Fsp4HI GCNGC 8 cut(s) 16, 487, 902, 999, 1302, 1368, 1371, 1567
FspBI CTAG 3 cut(s) 576, 879, 1322
GlaI GCGC 2 cut(s) 748, 1261
GluI GCNGC 8 cut(s) 16, 487, 902, 999, 1302, 1368, 1371, 1567
GsaI CCCAGC 2 cut(s) 1005, 1377
HaeII RGCGCY 1 cut(s) 1263
HaeIII GGCC 5 cut(s) 102, 140, 347, 1012, 1120
HapII CCGG 3 cut(s) 1013, 1439, 1577
HgaI GACGC 1 cut(s) 1316
HhaI GCGC 2 cut(s) 749, 1262
Hin6I GCGC 2 cut(s) 747, 1260
HinP1I GCGC 2 cut(s) 747, 1260
HincII GTYRAC 2 cut(s) 568, 1150
HindII GTYRAC 2 cut(s) 568, 1150
HinfI GANTC 3 cut(s) 132, 416, 781
HpaII CCGG 3 cut(s) 1013, 1439, 1577
HphI GGTGA 5 cut(s) 85, 256, 544, 572, 1015
Hpy166II GTNNAC 9 cut(s) 283, 285, 482, 528, 568, 1041, 1108, 1130, 1150
Hpy188I TCNGA 3 cut(s) 254, 421, 1228
Hpy188III TCNNGA 1 cut(s) 939
Hpy8I GTNNAC 9 cut(s) 283, 285, 482, 528, 568, 1041, 1108, 1130, 1150
HpyAV CCTTC 5 cut(s) 659, 959, 1036, 1067, 1233
HpyCH4III ACNGT 7 cut(s) 11, 39, 458, 532, 916, 1314, 1334
HpyF10VI GCNNNNNNNGC 3 cut(s) 1064, 1247, 1266
HpyF3I CTNAG 5 cut(s) 251, 512, 1157, 1256, 1293
HspAI GCGC 2 cut(s) 747, 1260
KpnI GGTACC 1 cut(s) 1439
Kzo9I GATC 1 cut(s) 1005
LmnI GCTCC 2 cut(s) 601, 976
Lsp1109I GCAGC 7 cut(s) 27, 473, 913, 1288, 1379, 1382, 1578
LweI GCATC 5 cut(s) 17, 228, 678, 1130, 1378
MaeI CTAG 3 cut(s) 576, 879, 1322
MaeIII GTNAC 2 cut(s) 434, 1328
MalI GATC 1 cut(s) 1007
MboI GATC 1 cut(s) 1005
MboII GAAGA 7 cut(s) 82, 181, 808, 1190, 1241, 1407, 1526
MfeI CAATTG 1 cut(s) 652
MhlI GDGCHC 2 cut(s) 149, 484
MluCI AATT 9 cut(s) 319, 404, 652, 1203, 1357, 1405, 1478, 1518, 1590
MlyI GAGTC 2 cut(s) 126, 425
MmeI TCCRAC 3 cut(s) 21, 58, 1068
Mph1103I ATGCAT 2 cut(s) 954, 1145
MroXI GAANNNNTTC 2 cut(s) 1203, 1518
MseI TTAA 3 cut(s) 125, 236, 696
MslI CAYNNNNRTG 5 cut(s) 290, 957, 1034, 1082, 1386
MspA1I CMGCKG 1 cut(s) 1373
MspCI CTTAAG 1 cut(s) 124
MspI CCGG 3 cut(s) 1013, 1439, 1577
MspR9I CCNGG 2 cut(s) 1440, 1578
MunI CAATTG 1 cut(s) 652
Mva1269I GAATGC 2 cut(s) 931, 1404
MwoI GCNNNNNNNGC 3 cut(s) 1064, 1247, 1266
NciI CCSGG 2 cut(s) 1440, 1578
NdeI CATATG 1 cut(s) 1069
NdeII GATC 1 cut(s) 1005
NlaIV GGNNCC 5 cut(s) 56, 166, 597, 625, 1437
NmuCI GTSAC 1 cut(s) 1328
NsiI ATGCAT 2 cut(s) 954, 1145
NspI RCATGY 2 cut(s) 295, 850
PceI AGGCCT 1 cut(s) 347
PciI ACATGT 2 cut(s) 291, 846
PcsI WCGNNNNNNNCGW 1 cut(s) 1324
PctI GAATGC 2 cut(s) 931, 1404
PdmI GAANNNNTTC 2 cut(s) 1203, 1518
PfeI GAWTC 1 cut(s) 781
PflMI CCANNNNNTGG 2 cut(s) 40, 161
PkrI GCNGC 8 cut(s) 17, 488, 903, 1000, 1303, 1369, 1372, 1568
PleI GAGTC 2 cut(s) 126, 424
PpsI GAGTC 2 cut(s) 126, 424
PscI ACATGT 2 cut(s) 291, 846
PspFI CCCAGC 2 cut(s) 1001, 1373
PspN4I GGNNCC 5 cut(s) 56, 166, 597, 625, 1437
PstI CTGCAG 1 cut(s) 1306
PstNI CAGNNNCTG 1 cut(s) 1373
PvuII CAGCTG 1 cut(s) 1373
RsaI GTAC 5 cut(s) 22, 284, 455, 1437, 1586
RsaNI GTAC 5 cut(s) 21, 283, 454, 1436, 1585
RseI CAYNNNNRTG 5 cut(s) 290, 957, 1034, 1082, 1386
SalI GTCGAC 1 cut(s) 1148
SaqAI TTAA 3 cut(s) 125, 236, 696
SatI GCNGC 8 cut(s) 16, 487, 902, 999, 1302, 1368, 1371, 1567
Sau3AI GATC 1 cut(s) 1005
SchI GAGTC 2 cut(s) 126, 425
ScrFI CCNGG 2 cut(s) 1440, 1578
SduI GDGCHC 2 cut(s) 149, 484
SfaNI GCATC 5 cut(s) 17, 228, 678, 1130, 1378
SfcI CTRYAG 1 cut(s) 1302
SmiMI CAYNNNNRTG 5 cut(s) 290, 957, 1034, 1082, 1386
SmlI CTYRAG 1 cut(s) 124
SmoI CTYRAG 1 cut(s) 124
Sse9I AATT 9 cut(s) 319, 404, 652, 1203, 1357, 1405, 1478, 1518, 1590
SseBI AGGCCT 1 cut(s) 347
SsiI CCGC 2 cut(s) 998, 1402
SspI AATATT 1 cut(s) 1114
SspMI CTAG 3 cut(s) 576, 879, 1322
StuI AGGCCT 1 cut(s) 347
StyD4I CCNGG 2 cut(s) 1438, 1576
TaaI ACNGT 7 cut(s) 11, 39, 458, 532, 916, 1314, 1334
TaqI TCGA 3 cut(s) 495, 1149, 1197
TasI AATT 9 cut(s) 319, 404, 652, 1203, 1357, 1405, 1478, 1518, 1590
TatI WGTACW 3 cut(s) 20, 282, 453
TauI GCSGC 1 cut(s) 1001
TfiI GAWTC 1 cut(s) 781
Tru1I TTAA 3 cut(s) 125, 236, 696
Tru9I TTAA 3 cut(s) 125, 236, 696
TscAI CASTG 3 cut(s) 577, 978, 1339
TseFI GTSAC 1 cut(s) 1328
TseI GCWGC 7 cut(s) 15, 486, 901, 1301, 1367, 1370, 1566
Tsp45I GTSAC 1 cut(s) 1328
TspDTI ATGAA 7 cut(s) 273, 377, 513, 1018, 1086, 1471, 1491
TspRI CASTG 3 cut(s) 577, 978, 1339
Van91I CCANNNNNTGG 2 cut(s) 40, 161
Vha464I CTTAAG 1 cut(s) 124
VneI GTGCAC 1 cut(s) 480
XapI RAATTY 5 cut(s) 1203, 1357, 1405, 1478, 1518
XceI RCATGY 2 cut(s) 295, 850
XmiI GTMKAC 2 cut(s) 1107, 1149
XmnI GAANNNNTTC 2 cut(s) 1203, 1518
XspI CTAG 3 cut(s) 576, 879, 1322
Zsp2I ATGCAT 2 cut(s) 954, 1145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.