Prupe.1G282900_v2.0.a1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016835
Physical Location & Seq
Forward (+)
28529492 .. 28531099
1608 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G282900.1

Sequence Viewer

Length: 1608 bp
ATGTCATCATATGGCAGCAGCAGCAGCAGCAGATGCCTGCAACTGTTAGAGAAGTGCAAGAACATGAAGCACTTGCAGCAAGCTCATGCACAAGTATTCACATGTGGGCTTGGCAACAGCAGCTTTGCCTTAAGCAGGGTCTTGGCCTTCTGCTCAGACCCAAATCATGGAAGTCTCTCCCATGCTTGGAAACTCTTCCAACACATCCCACAACCCACCATTTGCATCTACAACACCATGCTAAAAGCTTTATTGCTCAGAAATGATCTCATCCTAACCATCAATGTATTTACCAAGATGTTGCAAAATGGGATGTACCCAGATAATTATACCCTCCCTTATGTGTTAAAAGCTTGTGCTAGGCTGCAAAGCTCTTGTCTTGGAGAATTGGTTCATGGGTGCAGTTTGAAATTGGGTTTTGTTTCTGATATCTTTGTGGGTAACTCTCTGATTGTCATGTACTGTGCATTTGATGATATGAAAGCTGCAAGACACATATTTGATGAAATTCCCAGCCTAAGTGCTGTTTCATGGACGGTCATGATTTCTGGCCATTCAAAGGCGGGTGATCTCGACACAGCAAGACTGTTCTTTGATGAAGCTCCTGTGAGAGACAGAGGAATATGGGGCGCCATGATTTCTGGGTATGTGCAGAATAATTGTTTCAAGGAAGGTCTTTATATGTTCCGGCTGATGCAGCTTACAGAGATAGAGCCTGATGAGGCAATTTTTGTCAGCGTTCTATGTGCATGTGCTCATTTGGGAGCTCTGGATACCGGGATTTGGATTCACTCGTATTTGAATCGGCTTCGGTTGCCGCTGAGTGTTCGTTTGAGCACTGGTCTTATTGACATGTATGCTAAATGTGGGAAATTGGATTTGGCTAGAGGACTGTTTTATCAGATGCCAAAGAGAGACACAGTTTGCTGGAATGCTATGATATCAGGAATGGCAACGCATGGAGATGGAGAAGGTGCACTTGAGCTGTTTAGAGAGATGGAGGCTGCTTGGGTTAGGCCAGATGATATCACCTTCATTGCTGTGTTTACTGCTTGTAGTTATTCAGGCATGGCACATGAAGGCATGAAGGTGTTTGATAAAATGTGTCGGATATACAACATTGAGCCGAAAAGCGAACATTATGGATGTATAGTCGACCTTCTAAGCCGTGCCGGTCTCTTTGAAGAAGCAAAGGAAATAATTCAAAGAATGCCCAGTTCAAGTAAACCATCTGAAGAAGCAGTGGCTTGGAGAGCGTTTCTTAGTGCTTGTTGCAATCAGGGACAAGCTCAACTAGCTGAGTTTGCTGCGGAGAAACTCTTTCAGCTCGAACGCCACAGTGGGGTCTATGTCTTGCTCTCAAATTTATATGTTGCCGGGGGGAAGCATGGTGCTGCCAGAAGAATGAGGCATTTGATGAGAAACAGAGGAGTCGAGAAAGCACCAGGTTGCAGTTCGGTTGAGGTTAATAGAGCAGTTCATGAATTCATTGCGGGGGAGAAAACACACCGGCAAATGGAAGAAATACAATTAGTTTTGGGGACCATAAGCAAACAGTTGGATTTTTTAGGCAGTTATCCATATTTGTTTCTAGCTGACAAGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

536

Amino Acids

59.75

Weight (kDa)

7.52

Isoelectric Point (pI)

40.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016835)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g30430
malus_domestica MD16G1063600.v1.1
prunus_persica Prupe.1G282900_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0438721
rosa_laevigata RLG00000006334
rosa_multiflora Rmu_sc0000144.1_g000047 Rmu_sc0002505.1_g000006
rosa_roxburghii Rroxscaffold_5G00379760
rosa_rugosa Rorug04G0312800
rosa_samantha Rh4AG363400 Rh4BG374800 Rh4CG389000
rosa_wichuraiana Rw0G007190 Rw0G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 629
AccB7I CCANNNNNTGG 1 cut(s) 167
AccI GTMKAC 1 cut(s) 1155
AciI CCGC 4 cut(s) 563, 818, 1310, 1493
AcoI YGGCCR 1 cut(s) 550
AcsI RAATTY 3 cut(s) 507, 1363, 1484
AcuI CTGAAG 1 cut(s) 1254
AcyI GRCGYC 1 cut(s) 630
AfaI GTAC 2 cut(s) 317, 461
AfiI CCNNNNNNNGG 7 cut(s) 135, 167, 186, 559, 783, 1342, 1516
AflII CTTAAG 1 cut(s) 130
AflIII ACRYGT 2 cut(s) 101, 852
AgsI TTSAA 7 cut(s) 409, 558, 667, 802, 1184, 1205, 1221
AjnI CCWGG 1 cut(s) 1444
AjuI GAANNNNNNNTTGG 2 cut(s) 863, 895
AloI GAACNNNNNNTCC 2 cut(s) 375, 407
Alw21I GWGCWC 4 cut(s) 757, 769, 839, 979
Alw26I GTCTC 4 cut(s) 179, 606, 909, 1181
Alw44I GTGCAC 1 cut(s) 975
AoxI GGCC 3 cut(s) 144, 550, 1016
ApaLI GTGCAC 1 cut(s) 975
ApoI RAATTY 3 cut(s) 507, 1363, 1484
ArsI GACNNNNNNTTYG 2 cut(s) 361, 393
Asp700I GAANNNNTTC 3 cut(s) 194, 390, 1200
AspLEI GCGC 1 cut(s) 632
AspS9I GGNCC 1 cut(s) 1542
AsuC2I CCSGG 2 cut(s) 778, 1378
AsuHPI GGTGA 2 cut(s) 578, 1021
AvaII GGWCC 1 cut(s) 1542
BaeGI GKGCMC 1 cut(s) 979
BalI TGGCCA 1 cut(s) 552
BanI GGYRCC 1 cut(s) 629
BanII GRGCYC 1 cut(s) 769
Bbv12I GWGCWC 4 cut(s) 757, 769, 839, 979
BccI CCATC 4 cut(s) 287, 959, 991, 1237
BceAI ACGGC 1 cut(s) 1152
BciT130I CCWGG 1 cut(s) 1446
BciVI GTATCC 1 cut(s) 766
BcnI CCSGG 2 cut(s) 778, 1378
BcoDI GTCTC 4 cut(s) 179, 606, 909, 1181
BfaI CTAG 4 cut(s) 360, 885, 1295, 1592
BfoI RGCGCY 1 cut(s) 633
BfrI CTTAAG 1 cut(s) 130
BfuI GTATCC 1 cut(s) 766
Bme1390I CCNGG 3 cut(s) 778, 1378, 1446
Bme18I GGWCC 1 cut(s) 1542
BmgT120I GGNCC 1 cut(s) 1542
BmiI GGNNCC 2 cut(s) 631, 1543
BmrFI CCNGG 3 cut(s) 778, 1378, 1446
BmrI ACTGGG 1 cut(s) 1209
BmsI GCATC 4 cut(s) 23, 234, 684, 894
BmuI ACTGGG 1 cut(s) 1209
BpuEI CTTGAG 1 cut(s) 1001
BpuMI CCSGG 2 cut(s) 778, 1378
BsaHI GRCGYC 1 cut(s) 630
BsaI GGTCTC 1 cut(s) 1181
BsaJI CCNNGG 1 cut(s) 1377
BsaXI ACNNNNNCTCC 2 cut(s) 375, 405
Bsc4I CCNNNNNNNGG 7 cut(s) 135, 167, 186, 559, 783, 1342, 1516
Bse118I RCCGGY 2 cut(s) 1172, 1509
Bse1I ACTGG 2 cut(s) 844, 1215
Bse3DI GCAATG 2 cut(s) 1035, 1488
BseBI CCWGG 1 cut(s) 1446
BseDI CCNNGG 1 cut(s) 1377
BseGI GGATG 4 cut(s) 204, 270, 318, 1151
BseLI CCNNNNNNNGG 7 cut(s) 135, 167, 186, 559, 783, 1342, 1516
BseMI GCAATG 2 cut(s) 1035, 1488
BseMII CTCAG 4 cut(s) 168, 271, 812, 1290
BseNI ACTGG 2 cut(s) 844, 1215
BseRI GAGGAG 1 cut(s) 1443
BseSI GKGCMC 1 cut(s) 979
BseYI CCCAGC 1 cut(s) 512
BsgI GTGCAG 2 cut(s) 421, 671
BshFI GGCC 3 cut(s) 146, 552, 1018
BshNI GGYRCC 1 cut(s) 629
BsiHKAI GWGCWC 4 cut(s) 757, 769, 839, 979
BsiSI CCGG 5 cut(s) 688, 777, 1173, 1377, 1510
BslFI GGGAC 2 cut(s) 1296, 1555
BslI CCNNNNNNNGG 7 cut(s) 135, 167, 186, 559, 783, 1342, 1516
BsmAI GTCTC 4 cut(s) 179, 606, 909, 1181
BsmFI GGGAC 2 cut(s) 1296, 1555
BsmI GAATGC 2 cut(s) 937, 1215
BsnI GGCC 3 cut(s) 146, 552, 1018
Bso31I GGTCTC 1 cut(s) 1181
Bsp1286I GDGCHC 4 cut(s) 757, 769, 839, 979
Bsp143I GATC 2 cut(s) 265, 568
BspACI CCGC 4 cut(s) 563, 818, 1310, 1493
BspANI GGCC 3 cut(s) 146, 552, 1018
BspCNI CTCAG 4 cut(s) 167, 270, 813, 1291
BspHI TCATGA 2 cut(s) 540, 1480
BspLI GGNNCC 2 cut(s) 631, 1543
BspT107I GGYRCC 1 cut(s) 629
BspTI CTTAAG 1 cut(s) 130
BspTNI GGTCTC 1 cut(s) 1181
BsrDI GCAATG 2 cut(s) 1035, 1488
BsrFI RCCGGY 2 cut(s) 1172, 1509
BsrI ACTGG 2 cut(s) 844, 1215
BssAI RCCGGY 2 cut(s) 1172, 1509
BssECI CCNNGG 1 cut(s) 1377
BssMI GATC 2 cut(s) 265, 568
BssNI GRCGYC 1 cut(s) 630
Bst2UI CCWGG 1 cut(s) 1446
Bst4CI ACNGT 8 cut(s) 45, 464, 538, 588, 894, 922, 1340, 1557
Bst6I CTCTTC 1 cut(s) 200
BstACI GRCGYC 1 cut(s) 630
BstAFI CTTAAG 1 cut(s) 130
BstAPI GCANNNNNTGC 1 cut(s) 33
BstC8I GCNNGC 2 cut(s) 38, 81
BstDEI CTNAG 7 cut(s) 154, 257, 518, 821, 1163, 1262, 1299
BstENI CCTNNNNNAGG 1 cut(s) 133
BstF5I GGATG 4 cut(s) 204, 270, 318, 1151
BstH2I RGCGCY 1 cut(s) 633
BstHHI GCGC 1 cut(s) 632
BstKTI GATC 2 cut(s) 268, 571
BstMAI GTCTC 4 cut(s) 179, 606, 909, 1181
BstMBI GATC 2 cut(s) 265, 568
BstNI CCWGG 1 cut(s) 1446
BstNSI RCATGY 3 cut(s) 105, 753, 856
BstSCI CCNGG 3 cut(s) 776, 1376, 1444
BstSLI GKGCMC 1 cut(s) 979
BsuI GTATCC 1 cut(s) 766
BsuRI GGCC 3 cut(s) 146, 552, 1018
BtsCI GGATG 4 cut(s) 204, 270, 318, 1151
BtsI GCAGTG 1 cut(s) 1248
BtsIMutI CAGTG 3 cut(s) 837, 1248, 1345
Cac8I GCNNGC 2 cut(s) 38, 81
CciI TCATGA 2 cut(s) 540, 1480
CfoI GCGC 1 cut(s) 632
Cfr10I RCCGGY 2 cut(s) 1172, 1509
Cfr13I GGNCC 1 cut(s) 1542
CsiI ACCWGGT 1 cut(s) 1444
Csp6I GTAC 2 cut(s) 316, 460
CviQI GTAC 2 cut(s) 316, 460
DdeI CTNAG 7 cut(s) 154, 257, 518, 821, 1163, 1262, 1299
DinI GGCGCC 1 cut(s) 631
DpnI GATC 2 cut(s) 267, 570
DpnII GATC 2 cut(s) 265, 568
EaeI YGGCCR 1 cut(s) 550
Eam1104I CTCTTC 1 cut(s) 200
EarI CTCTTC 1 cut(s) 200
Ecl136II GAGCTC 1 cut(s) 767
Eco24I GRGCYC 1 cut(s) 769
Eco31I GGTCTC 1 cut(s) 1181
Eco32I GATATC 3 cut(s) 430, 942, 1027
Eco47I GGWCC 1 cut(s) 1542
Eco53kI GAGCTC 1 cut(s) 767
Eco57I CTGAAG 1 cut(s) 1254
EcoICRI GAGCTC 1 cut(s) 767
EcoNI CCTNNNNNAGG 1 cut(s) 133
EcoRI GAATTC 1 cut(s) 1484
EcoRII CCWGG 1 cut(s) 1444
EcoRV GATATC 3 cut(s) 430, 942, 1027
EcoT38I GRGCYC 1 cut(s) 769
EgeI GGCGCC 1 cut(s) 631
EheI GGCGCC 1 cut(s) 631
FalI AAGNNNNNCTT 2 cut(s) 963, 995
FaqI GGGAC 2 cut(s) 1296, 1555
FauI CCCGC 2 cut(s) 556, 1486
FauNDI CATATG 1 cut(s) 10
FblI GTMKAC 1 cut(s) 1155
FokI GGATG 4 cut(s) 191, 257, 325, 1158
FriOI GRGCYC 1 cut(s) 769
FspBI CTAG 4 cut(s) 360, 885, 1295, 1592
GlaI GCGC 1 cut(s) 631
GsaI CCCAGC 1 cut(s) 516
HaeII RGCGCY 1 cut(s) 633
HaeIII GGCC 3 cut(s) 146, 552, 1018
HapII CCGG 5 cut(s) 688, 777, 1173, 1377, 1510
HhaI GCGC 1 cut(s) 632
Hin1I GRCGYC 1 cut(s) 630
Hin6I GCGC 1 cut(s) 630
HinP1I GCGC 1 cut(s) 630
HincII GTYRAC 1 cut(s) 1156
HindII GTYRAC 1 cut(s) 1156
HindIII AAGCTT 2 cut(s) 246, 351
HinfI GANTC 3 cut(s) 787, 802, 1431
HpaII CCGG 5 cut(s) 688, 777, 1173, 1377, 1510
HphI GGTGA 2 cut(s) 578, 1021
Hpy166II GTNNAC 4 cut(s) 977, 1047, 1156, 1226
Hpy188I TCNGA 7 cut(s) 157, 260, 427, 450, 903, 1110, 1234
Hpy188III TCNNGA 6 cut(s) 541, 572, 770, 945, 1435, 1481
Hpy8I GTNNAC 4 cut(s) 977, 1047, 1156, 1226
HpyAV CCTTC 7 cut(s) 157, 665, 965, 1042, 1073, 1081, 1169
HpyCH4III ACNGT 8 cut(s) 45, 464, 538, 588, 894, 922, 1340, 1557
HpyF3I CTNAG 7 cut(s) 154, 257, 518, 821, 1163, 1262, 1299
Hsp92I GRCGYC 1 cut(s) 630
HspAI GCGC 1 cut(s) 630
KasI GGCGCC 1 cut(s) 629
Kzo9I GATC 2 cut(s) 265, 568
LmnI GCTCC 2 cut(s) 607, 764
LweI GCATC 4 cut(s) 23, 234, 684, 894
MabI ACCWGGT 1 cut(s) 1444
MaeI CTAG 4 cut(s) 360, 885, 1295, 1592
MaeIII GTNAC 1 cut(s) 440
MalI GATC 2 cut(s) 267, 570
MboI GATC 2 cut(s) 265, 568
MboII GAAGA 5 cut(s) 187, 1196, 1247, 1413, 1532
MhlI GDGCHC 4 cut(s) 757, 769, 839, 979
MlsI TGGCCA 1 cut(s) 552
MluNI TGGCCA 1 cut(s) 552
Mly113I GGCGCC 1 cut(s) 630
MlyI GAGTC 1 cut(s) 1440
MmeI TCCRAC 3 cut(s) 223, 1088, 1539
MnlI CCTC 8 cut(s) 344, 611, 715, 881, 994, 1401, 1421, 1456
Mox20I TGGCCA 1 cut(s) 552
MroXI GAANNNNTTC 3 cut(s) 194, 390, 1200
MscI TGGCCA 1 cut(s) 552
MseI TTAA 3 cut(s) 131, 347, 1467
MslI CAYNNNNRTG 3 cut(s) 963, 1040, 1088
Msp20I TGGCCA 1 cut(s) 552
MspA1I CMGCKG 1 cut(s) 820
MspCI CTTAAG 1 cut(s) 130
MspI CCGG 5 cut(s) 688, 777, 1173, 1377, 1510
MspR9I CCNGG 3 cut(s) 778, 1378, 1446
Mva1269I GAATGC 2 cut(s) 937, 1215
MvaI CCWGG 1 cut(s) 1446
NarI GGCGCC 1 cut(s) 630
NciI CCSGG 2 cut(s) 778, 1378
NdeI CATATG 1 cut(s) 10
NdeII GATC 2 cut(s) 265, 568
NlaIV GGNNCC 2 cut(s) 631, 1543
NspI RCATGY 3 cut(s) 105, 753, 856
PagI TCATGA 2 cut(s) 540, 1480
PciI ACATGT 2 cut(s) 101, 852
PctI GAATGC 2 cut(s) 937, 1215
PdmI GAANNNNTTC 3 cut(s) 194, 390, 1200
PfeI GAWTC 2 cut(s) 787, 802
PflMI CCANNNNNTGG 1 cut(s) 167
PleI GAGTC 1 cut(s) 1439
PluTI GGCGCC 1 cut(s) 633
PpsI GAGTC 1 cut(s) 1439
PscI ACATGT 2 cut(s) 101, 852
Psp124BI GAGCTC 1 cut(s) 769
Psp6I CCWGG 1 cut(s) 1444
PspFI CCCAGC 1 cut(s) 512
PspGI CCWGG 1 cut(s) 1444
PspN4I GGNNCC 2 cut(s) 631, 1543
PspPI GGNCC 1 cut(s) 1542
RsaI GTAC 2 cut(s) 317, 461
RsaNI GTAC 2 cut(s) 316, 460
RseI CAYNNNNRTG 3 cut(s) 963, 1040, 1088
SacI GAGCTC 1 cut(s) 769
SalI GTCGAC 1 cut(s) 1154
SaqAI TTAA 3 cut(s) 131, 347, 1467
Sau3AI GATC 2 cut(s) 265, 568
Sau96I GGNCC 1 cut(s) 1542
SchI GAGTC 1 cut(s) 1440
ScrFI CCNGG 3 cut(s) 778, 1378, 1446
SduI GDGCHC 4 cut(s) 757, 769, 839, 979
SexAI ACCWGGT 1 cut(s) 1444
SfaNI GCATC 4 cut(s) 23, 234, 684, 894
SfoI GGCGCC 1 cut(s) 631
SinI GGWCC 1 cut(s) 1542
SmiMI CAYNNNNRTG 3 cut(s) 963, 1040, 1088
SmlI CTYRAG 2 cut(s) 130, 980
SmoI CTYRAG 2 cut(s) 130, 980
SsiI CCGC 4 cut(s) 563, 818, 1310, 1493
SspDI GGCGCC 1 cut(s) 629
SspMI CTAG 4 cut(s) 360, 885, 1295, 1592
SstI GAGCTC 1 cut(s) 769
StyD4I CCNGG 3 cut(s) 776, 1376, 1444
TaaI ACNGT 8 cut(s) 45, 464, 538, 588, 894, 922, 1340, 1557
TaqI TCGA 4 cut(s) 573, 1155, 1329, 1434
TatI WGTACW 1 cut(s) 459
TauI GCSGC 1 cut(s) 820
TfiI GAWTC 2 cut(s) 787, 802
Tru1I TTAA 3 cut(s) 131, 347, 1467
Tru9I TTAA 3 cut(s) 131, 347, 1467
TscAI CASTG 3 cut(s) 844, 1248, 1345
TspRI CASTG 3 cut(s) 844, 1248, 1345
Van91I CCANNNNNTGG 1 cut(s) 167
Vha464I CTTAAG 1 cut(s) 130
VneI GTGCAC 1 cut(s) 975
VpaK11BI GGWCC 1 cut(s) 1542
XagI CCTNNNNNAGG 1 cut(s) 133
XapI RAATTY 3 cut(s) 507, 1363, 1484
XceI RCATGY 3 cut(s) 105, 753, 856
XmiI GTMKAC 1 cut(s) 1155
XmnI GAANNNNTTC 3 cut(s) 194, 390, 1200
XspI CTAG 4 cut(s) 360, 885, 1295, 1592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.