FvH4_4g30820

Ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
30250882 .. 30253775
2894 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g30820.t1

Sequence Viewer

Length: 1491 bp
ATGGTAGTCACTCACTTCACTCTATCTTCATCCTCCTCCACTTTCCTCTCCTCTCCTCTCCAACCAAAACTCAAACACCTTCCCTCCCTCACAAAACGACCAAACCTACTTCATCTCAACAACAAACCTCTCCCCTTGCGCGTCACCTCACTCTCTGTCCCCCAATGCGACACCTCACTTCCTCCGGCGGTTCAGACCTTCTGGCAGTGGCTCCGGGACGAAGGTGTAGTCTCATCCAAGACACTTGCAAAGCCAGCTTTGGTCCCCGAAGGCATGGGGCTCGTGGCCAACAGAGACATTGCCAGAAACGAGGTCGTTTTGGAGGTTCCAAAGAGGCTGTGGATAAACCCGGATGCTGTGTCAGCCTCGGAGATTGGAAATGTGTGCAGTGGGTTGAAGCCTTGGGTGTCTGTGGCTCTGTTTTTGCTCAGAGAGAAGAGTAGGGACGATTCCAAGTGGAGGCTTTACTTTGATATTCTTCCTGAGACTACTGATTCCCCTGTGTTCTGGTCAGAAGAGGAGCTTGATGAGCTTCAAGGAACTCAACTTTTGAGTACAACAATGGGTGTGAAAGAGTATGTGGAGAGTGAGTTTCAGAAAGTGGAACAAGAAATCATCCTTCCTAACAAGAAGCTTTTTCCTTCTCCTATCACATTGGATGACTTCTTTTGGGCATTTGGGATACTGAGATCTCGGGCGTTCTCGCGCCTCCGTAATCAAAGTCTTGTTTTGATCCCGTTCGCAGACTTTATTAACCACAGTTCCAGCGTAACTACAGAAGAGCATGCATGGGAGATCAAAGGAGCAGCAGGTCTTTTCTCTTGGGACTATCTGTTCTCTATAAGAAGCCCTCTTTCTGTCAAGGCTGGAGAGCAGGTTTACATCCAGTATGATCTAAACAAGAGCAATGCTGAGTTAGCTTTGGACTATGGATTCATAGAGTCGAAGGCAAATCGAAATGCGTTTACCTTGACACTGCAGATATCAGAATCAGACCCATTTTATGGGGACAAGCTGGACATTGCTGAGTCAAATGGTATGGGTGAGACTGCATACTTCGACATATTCTTGGACTGTTCACTTCCAGCACAAATGATTCCATATCTGCGGCTGGTAGCTCTTGGAGGAACCGATGCCTTCCTCTTGGAATCTATATTCAGGAACTCTGTCTGGGGATTTCTTGACCTTCCTGTGAGCCGTGCCAACGAGGAGCTCATATGCAGAGTAGTCAGAGATGCCTGCAAAGCTGCTCTTTCTGCCTATCCTACCACCCTTGAAGAGGATGAAAAGTTAATGGACTCAGAACTGGATCCAAGGCTGGGCATTGCTGTTGGAATCAGAGCAGGGGAGAAGAAGGTGCTGCAACATATCGATAGTATTTTCAAGGACAGAGAGTCAGAACTAGACATATTGGAGTACTACCAAGAAAGAAGGCTTAAGGATCTTGGACTCTCTGGGGAGCTAGGAGACATCATCTTCTGGGAGAAGTAG

Protein Analysis

497

Amino Acids

55.99

Weight (kDa)

4.92

Isoelectric Point (pI)

52.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 91 - 297 9.6e-06 SET domain
Rubis-subs-bind PF09273 330 - 454 1.1e-32 Rubisco LSMT substrate-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010211)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 800, 865
AccB7I CCANNNNNTGG 1 cut(s) 1004
AccII CGCG 2 cut(s) 141, 706
AciI CCGC 2 cut(s) 188, 1108
AclWI GGATC 4 cut(s) 727, 1304, 1317, 1449
AcoI YGGCCR 1 cut(s) 285
AfaI GTAC 2 cut(s) 556, 1418
AfiI CCNNNNNNNGG 4 cut(s) 459, 1004, 1279, 1319
AflII CTTAAG 1 cut(s) 1436
AgsI TTSAA 4 cut(s) 397, 536, 1277, 1384
AhdI GACNNNNNGTC 1 cut(s) 1393
AloI GAACNNNNNNTCC 2 cut(s) 818, 850
Alw21I GWGCWC 1 cut(s) 1215
Alw26I GTCTC 5 cut(s) 235, 288, 479, 1040, 1461
AlwI GGATC 4 cut(s) 727, 1304, 1317, 1449
Ama87I CYCGRG 1 cut(s) 693
AoxI GGCC 1 cut(s) 285
ApeKI GCWGC 3 cut(s) 806, 1247, 1360
ArsI GACNNNNNNTTYG 2 cut(s) 213, 245
AspLEI GCGC 2 cut(s) 141, 708
AspS9I GGNCC 1 cut(s) 262
AsuC2I CCSGG 2 cut(s) 215, 350
AsuHPI GGTGA 2 cut(s) 136, 1055
AvaI CYCGRG 1 cut(s) 693
AvaII GGWCC 1 cut(s) 262
BalI TGGCCA 1 cut(s) 287
BamHI GGATCC 1 cut(s) 1309
BanII GRGCYC 2 cut(s) 282, 1215
BauI CACGAG 1 cut(s) 281
Bbv12I GWGCWC 1 cut(s) 1215
BbvI GCAGC 3 cut(s) 818, 1234, 1347
BceAI ACGGC 1 cut(s) 1182
BcgI CGANNNNNNTGC 2 cut(s) 262, 296
BciVI GTATCC 1 cut(s) 675
BcnI CCSGG 2 cut(s) 215, 350
BcoDI GTCTC 5 cut(s) 235, 288, 479, 1040, 1461
BfaI CTAG 2 cut(s) 1403, 1463
BfmI CTRYAG 2 cut(s) 774, 977
BfrI CTTAAG 1 cut(s) 1436
BfuAI ACCTGC 2 cut(s) 800, 865
BfuI GTATCC 1 cut(s) 675
BglII AGATCT 1 cut(s) 689
BisI GCNGC 4 cut(s) 807, 1109, 1248, 1361
BlsI GCNGC 4 cut(s) 808, 1110, 1249, 1362
BmcAI AGTACT 1 cut(s) 1418
Bme1390I CCNGG 2 cut(s) 215, 350
Bme18I GGWCC 1 cut(s) 262
BmeRI GACNNNNNGTC 1 cut(s) 1393
BmeT110I CYCGRG 1 cut(s) 693
BmgT120I GGNCC 1 cut(s) 262
BmiI GGNNCC 5 cut(s) 212, 264, 327, 1129, 1311
BmrFI CCNGG 2 cut(s) 215, 350
BmsI GCATC 3 cut(s) 343, 1123, 1225
BpmI CTGGAG 1 cut(s) 888
BpuMI CCSGG 2 cut(s) 215, 350
Bsa29I ATCGAT 1 cut(s) 1371
BsaJI CCNNGG 3 cut(s) 366, 401, 1313
BsaXI ACNNNNNCTCC 6 cut(s) 68, 98, 575, 605, 861, 891
Bsc4I CCNNNNNNNGG 4 cut(s) 459, 1004, 1279, 1319
Bse1I ACTGG 2 cut(s) 886, 1311
Bse3DI GCAATG 4 cut(s) 297, 913, 1020, 1323
BseCI ATCGAT 1 cut(s) 1371
BseDI CCNNGG 3 cut(s) 366, 401, 1313
BseGI GGATG 7 cut(s) 29, 233, 358, 615, 664, 882, 1288
BseLI CCNNNNNNNGG 4 cut(s) 459, 1004, 1279, 1319
BseMI GCAATG 4 cut(s) 297, 913, 1020, 1323
BseMII CTCAG 6 cut(s) 442, 474, 677, 903, 1017, 1314
BseNI ACTGG 2 cut(s) 886, 1311
BseRI GAGGAG 5 cut(s) 25, 40, 45, 533, 1223
BseXI GCAGC 3 cut(s) 818, 1234, 1347
BseYI CCCAGC 1 cut(s) 1318
BsgI GTGCAG 1 cut(s) 406
Bsh1236I CGCG 2 cut(s) 141, 706
BshFI GGCC 1 cut(s) 287
BshVI ATCGAT 1 cut(s) 1371
BsiHKAI GWGCWC 1 cut(s) 1215
BsiHKCI CYCGRG 1 cut(s) 693
BsiSI CCGG 3 cut(s) 185, 214, 350
BslFI GGGAC 6 cut(s) 143, 230, 248, 458, 839, 1022
BslI CCNNNNNNNGG 4 cut(s) 459, 1004, 1279, 1319
BsmAI GTCTC 5 cut(s) 235, 288, 479, 1040, 1461
BsmFI GGGAC 6 cut(s) 143, 230, 248, 458, 839, 1022
BsnI GGCC 1 cut(s) 287
BsoBI CYCGRG 1 cut(s) 693
Bsp1286I GDGCHC 2 cut(s) 282, 1215
Bsp143I GATC 6 cut(s) 689, 732, 795, 892, 1309, 1441
BspACI CCGC 2 cut(s) 188, 1108
BspANI GGCC 1 cut(s) 287
BspCNI CTCAG 6 cut(s) 441, 475, 678, 904, 1018, 1313
BspDI ATCGAT 1 cut(s) 1371
BspFNI CGCG 2 cut(s) 141, 706
BspLI GGNNCC 5 cut(s) 212, 264, 327, 1129, 1311
BspMAI CTGCAG 1 cut(s) 981
BspMI ACCTGC 2 cut(s) 800, 865
BspPI GGATC 4 cut(s) 727, 1304, 1317, 1449
BspQI GCTCTTC 1 cut(s) 774
BspTI CTTAAG 1 cut(s) 1436
BsrDI GCAATG 4 cut(s) 297, 913, 1020, 1323
BsrI ACTGG 2 cut(s) 886, 1311
BssECI CCNNGG 3 cut(s) 366, 401, 1313
BssMI GATC 6 cut(s) 689, 732, 795, 892, 1309, 1441
BssSI CACGAG 1 cut(s) 281
BssT1I CCWWGG 2 cut(s) 401, 1313
Bst2BI CACGAG 1 cut(s) 281
Bst4CI ACNGT 2 cut(s) 761, 1076
Bst6I CTCTTC 4 cut(s) 431, 510, 774, 1272
BstAFI CTTAAG 1 cut(s) 1436
BstC8I GCNNGC 3 cut(s) 255, 786, 1240
BstDEI CTNAG 6 cut(s) 428, 483, 686, 912, 1026, 1300
BstENI CCTNNNNNAGG 1 cut(s) 1277
BstF5I GGATG 7 cut(s) 29, 233, 358, 615, 664, 882, 1288
BstFNI CGCG 2 cut(s) 141, 706
BstHHI GCGC 2 cut(s) 141, 708
BstKTI GATC 6 cut(s) 692, 735, 798, 895, 1312, 1444
BstMAI GTCTC 5 cut(s) 235, 288, 479, 1040, 1461
BstMBI GATC 6 cut(s) 689, 732, 795, 892, 1309, 1441
BstMWI GCNNNNNNNGC 6 cut(s) 254, 362, 529, 917, 1244, 1256
BstNSI RCATGY 1 cut(s) 788
BstSCI CCNGG 2 cut(s) 213, 348
BstSFI CTRYAG 2 cut(s) 774, 977
BstUI CGCG 2 cut(s) 141, 706
BstV1I GCAGC 3 cut(s) 818, 1234, 1347
BstX2I RGATCY 3 cut(s) 689, 1309, 1441
BstYI RGATCY 3 cut(s) 689, 1309, 1441
Bsu15I ATCGAT 1 cut(s) 1371
BsuI GTATCC 1 cut(s) 675
BsuRI GGCC 1 cut(s) 287
BsuTUI ATCGAT 1 cut(s) 1371
BtsCI GGATG 7 cut(s) 29, 233, 358, 615, 664, 882, 1288
BtsI GCAGTG 3 cut(s) 212, 394, 974
BtsIMutI CAGTG 3 cut(s) 212, 394, 974
BveI ACCTGC 2 cut(s) 800, 865
Cac8I GCNNGC 3 cut(s) 255, 786, 1240
CfoI GCGC 2 cut(s) 141, 708
Cfr13I GGNCC 1 cut(s) 262
ClaI ATCGAT 1 cut(s) 1371
CseI GACGC 1 cut(s) 130
Csp6I GTAC 2 cut(s) 555, 1417
CviAII CATG 3 cut(s) 274, 785, 789
CviQI GTAC 2 cut(s) 555, 1417
DdeI CTNAG 6 cut(s) 428, 483, 686, 912, 1026, 1300
DpnI GATC 6 cut(s) 691, 734, 797, 894, 1311, 1443
DpnII GATC 6 cut(s) 689, 732, 795, 892, 1309, 1441
DriI GACNNNNNGTC 1 cut(s) 1393
EaeI YGGCCR 1 cut(s) 285
Eam1104I CTCTTC 4 cut(s) 431, 510, 774, 1272
Eam1105I GACNNNNNGTC 1 cut(s) 1393
EarI CTCTTC 4 cut(s) 431, 510, 774, 1272
Ecl136II GAGCTC 1 cut(s) 1213
Eco130I CCWWGG 2 cut(s) 401, 1313
Eco24I GRGCYC 2 cut(s) 282, 1215
Eco32I GATATC 1 cut(s) 984
Eco47I GGWCC 1 cut(s) 262
Eco53kI GAGCTC 1 cut(s) 1213
Eco88I CYCGRG 1 cut(s) 693
EcoICRI GAGCTC 1 cut(s) 1213
EcoNI CCTNNNNNAGG 1 cut(s) 1277
EcoRV GATATC 1 cut(s) 984
EcoT14I CCWWGG 2 cut(s) 401, 1313
EcoT22I ATGCAT 1 cut(s) 790
EcoT38I GRGCYC 2 cut(s) 282, 1215
ErhI CCWWGG 2 cut(s) 401, 1313
FaeI CATG 3 cut(s) 277, 788, 792
FalI AAGNNNNNCTT 4 cut(s) 507, 539, 1236, 1268
FaqI GGGAC 6 cut(s) 143, 230, 248, 458, 839, 1022
FatI CATG 3 cut(s) 273, 784, 788
FauNDI CATATG 1 cut(s) 1217
Fnu4HI GCNGC 4 cut(s) 807, 1109, 1248, 1361
FokI GGATG 7 cut(s) 16, 220, 365, 602, 671, 869, 1295
FriOI GRGCYC 2 cut(s) 282, 1215
Fsp4HI GCNGC 4 cut(s) 807, 1109, 1248, 1361
FspBI CTAG 2 cut(s) 1403, 1463
GlaI GCGC 2 cut(s) 140, 707
GluI GCNGC 4 cut(s) 807, 1109, 1248, 1361
GsaI CCCAGC 1 cut(s) 1322
GsuI CTGGAG 1 cut(s) 888
HaeIII GGCC 1 cut(s) 287
HapII CCGG 3 cut(s) 185, 214, 350
HgaI GACGC 1 cut(s) 130
HhaI GCGC 2 cut(s) 141, 708
Hin1II CATG 3 cut(s) 277, 788, 792
Hin6I GCGC 2 cut(s) 139, 706
HinP1I GCGC 2 cut(s) 139, 706
HindIII AAGCTT 1 cut(s) 632
HpaII CCGG 3 cut(s) 185, 214, 350
HphI GGTGA 2 cut(s) 136, 1055
Hpy166II GTNNAC 3 cut(s) 880, 966, 1079
Hpy188III TCNNGA 3 cut(s) 482, 1159, 1181
Hpy8I GTNNAC 3 cut(s) 880, 966, 1079
HpyCH4III ACNGT 2 cut(s) 761, 1076
HpyCH4V TGCA 8 cut(s) 248, 387, 788, 979, 1052, 1221, 1242, 1363
HpyF10VI GCNNNNNNNGC 6 cut(s) 254, 362, 529, 917, 1244, 1256
HpyF3I CTNAG 6 cut(s) 428, 483, 686, 912, 1026, 1300
Hsp92II CATG 3 cut(s) 277, 788, 792
HspAI GCGC 2 cut(s) 139, 706
Kzo9I GATC 6 cut(s) 689, 732, 795, 892, 1309, 1441
LguI GCTCTTC 1 cut(s) 774
LmnI GCTCC 5 cut(s) 216, 520, 803, 1210, 1459
Lsp1109I GCAGC 3 cut(s) 818, 1234, 1347
LweI GCATC 3 cut(s) 343, 1123, 1225
MaeI CTAG 2 cut(s) 1403, 1463
MaeIII GTNAC 3 cut(s) 7, 142, 769
MalI GATC 6 cut(s) 691, 734, 797, 894, 1311, 1443
MboI GATC 6 cut(s) 689, 732, 795, 892, 1309, 1441
MboII GAAGA 8 cut(s) 18, 448, 470, 527, 791, 1289, 1363, 1468
MflI RGATCY 3 cut(s) 689, 1309, 1441
MhlI GDGCHC 2 cut(s) 282, 1215
MlsI TGGCCA 1 cut(s) 287
MluNI TGGCCA 1 cut(s) 287
MlyI GAGTC 5 cut(s) 950, 1037, 1292, 1403, 1443
MmeI TCCRAC 2 cut(s) 85, 1312
Mox20I TGGCCA 1 cut(s) 287
Mph1103I ATGCAT 1 cut(s) 790
MscI TGGCCA 1 cut(s) 287
MseI TTAA 3 cut(s) 753, 1292, 1437
Msp20I TGGCCA 1 cut(s) 287
MspCI CTTAAG 1 cut(s) 1436
MspI CCGG 3 cut(s) 185, 214, 350
MspR9I CCNGG 2 cut(s) 215, 350
MvnI CGCG 2 cut(s) 141, 706
MwoI GCNNNNNNNGC 6 cut(s) 254, 362, 529, 917, 1244, 1256
NciI CCSGG 2 cut(s) 215, 350
NdeI CATATG 1 cut(s) 1217
NdeII GATC 6 cut(s) 689, 732, 795, 892, 1309, 1441
NlaIII CATG 3 cut(s) 277, 788, 792
NlaIV GGNNCC 5 cut(s) 212, 264, 327, 1129, 1311
NmuCI GTSAC 2 cut(s) 7, 142
NsiI ATGCAT 1 cut(s) 790
NspI RCATGY 1 cut(s) 788
PaeI GCATGC 1 cut(s) 788
PciSI GCTCTTC 1 cut(s) 774
PfeI GAWTC 7 cut(s) 449, 494, 933, 989, 1096, 1148, 1335
PflMI CCANNNNNTGG 1 cut(s) 1004
PfoI TCCNGGA 1 cut(s) 213
PkrI GCNGC 4 cut(s) 808, 1110, 1249, 1362
PleI GAGTC 5 cut(s) 949, 1036, 1292, 1402, 1443
PpsI GAGTC 5 cut(s) 949, 1036, 1292, 1402, 1443
Psp124BI GAGCTC 1 cut(s) 1215
PspFI CCCAGC 1 cut(s) 1318
PspN4I GGNNCC 5 cut(s) 212, 264, 327, 1129, 1311
PspPI GGNCC 1 cut(s) 262
PstI CTGCAG 1 cut(s) 981
PsuI RGATCY 3 cut(s) 689, 1309, 1441
RsaI GTAC 2 cut(s) 556, 1418
RsaNI GTAC 2 cut(s) 555, 1417
SacI GAGCTC 1 cut(s) 1215
SapI GCTCTTC 1 cut(s) 774
SaqAI TTAA 3 cut(s) 753, 1292, 1437
SatI GCNGC 4 cut(s) 807, 1109, 1248, 1361
Sau3AI GATC 6 cut(s) 689, 732, 795, 892, 1309, 1441
Sau96I GGNCC 1 cut(s) 262
ScaI AGTACT 1 cut(s) 1418
SchI GAGTC 5 cut(s) 950, 1037, 1292, 1403, 1443
ScrFI CCNGG 2 cut(s) 215, 350
SduI GDGCHC 2 cut(s) 282, 1215
SfaNI GCATC 3 cut(s) 343, 1123, 1225
SfcI CTRYAG 2 cut(s) 774, 977
SinI GGWCC 1 cut(s) 262
SmlI CTYRAG 1 cut(s) 1436
SmoI CTYRAG 1 cut(s) 1436
SphI GCATGC 1 cut(s) 788
SsiI CCGC 2 cut(s) 188, 1108
SspMI CTAG 2 cut(s) 1403, 1463
SstI GAGCTC 1 cut(s) 1215
StyD4I CCNGG 2 cut(s) 213, 348
StyI CCWWGG 2 cut(s) 401, 1313
TaaI ACNGT 2 cut(s) 761, 1076
TaqI TCGA 4 cut(s) 944, 955, 1059, 1371
TatI WGTACW 2 cut(s) 554, 1416
TauI GCSGC 1 cut(s) 1111
TfiI GAWTC 7 cut(s) 449, 494, 933, 989, 1096, 1148, 1335
Tru1I TTAA 3 cut(s) 753, 1292, 1437
Tru9I TTAA 3 cut(s) 753, 1292, 1437
TscAI CASTG 3 cut(s) 212, 394, 981
TseFI GTSAC 2 cut(s) 7, 142
TseI GCWGC 3 cut(s) 806, 1247, 1360
Tsp45I GTSAC 2 cut(s) 7, 142
TspDTI ATGAA 4 cut(s) 18, 101, 925, 1299
TspGWI ACGGA 1 cut(s) 701
TspRI CASTG 3 cut(s) 212, 394, 981
Van91I CCANNNNNTGG 1 cut(s) 1004
Vha464I CTTAAG 1 cut(s) 1436
VpaK11BI GGWCC 1 cut(s) 262
XagI CCTNNNNNAGG 1 cut(s) 1277
XceI RCATGY 1 cut(s) 788
XcmI CCANNNNNNNNNTGG 1 cut(s) 336
XspI CTAG 2 cut(s) 1403, 1463
ZrmI AGTACT 1 cut(s) 1418
Zsp2I ATGCAT 1 cut(s) 790
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.