Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0010211

Physical Location & Seq

Genomic Coordinates Reverse (-)

3976550 .. 3977694

Gene Structure 1145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g06090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGAGTGTAAAGGAGTACGTGCGGACTGAGTTTCTAAAACTGGAACAAGAAACCATCCTCCCTAACAAGCAGCCTTTTCCTTCTCCCATCACAATGGACGACTTCTTCTGGGCGTTCAGAATACTCAGATCGAGGGCATTCTCCCGCCTCCGCGGTCAGAATCTTGTTTTGATCCCTCTTGCAGACTTTGTTTCCAGCATAACCACAGAAGAACATGCATATGACGTCAAAGGAGCAGCAGGTCTTTTCTCTTGGGATTATCTGTTTTCGCTACGGAGCCCCGCTGCTGTCAAGGCGGGCGTGCAGGTGAAGTTTTCCCAATACGATATAAACAAGAGCAATGCTGAGTTTGCCTTGGACTACGGAATCATAGATTCCAACACTAATCGCAGTGGATTTACCTTAACGCTGGAAATTTCCGAACCAGACCGATTTTATGAGGACAGGCTGGACATTGCTGAGAAAAATGGTTTGGGTGAAACTGCATACTTCGACATATTTTTGGAGAGCTCGCTTCCACCTGCATTGATTCCATATCTGCGGCTGGTAGCTCTTGGAGGGACCGACGCCTTCCTCTTGGAATCTATATTCAGGAACGATATCTGGGACCACCTTCAACTGCCGGTGAGCCCTGCCAATGAAGAGCTCATATGCAGAGTAGTTCAAGATGCCTGCAAATCCGCTCTTTCCGGCTATCCCACCACCATCGAAGAGTTGAAAGAATCAAAACTGGATCCGAGGCTTGAGATTGCTGTTGGAATAAGGCAAGGGGAGAAGAAGGTGCTGCAGCATATTGATGGGATTTTCAAGGACACAGAATCAGAGCTACCTCAACCGGAATACTACCAGGAAAGGCGGCTCAAGGATCTCGGCCTCTGCGGGGAGCTTGAAGACACAAGTCTTCTGGGAACCCAAGTAGGGAAAATTCATGTCACTGAGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006479 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016278 GO:0016279 GO:0016740 GO:0016741 GO:0018022 GO:0018023 GO:0018026 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

315

Amino Acids

35.6

Weight (kDa)

4.83

Isoelectric Point (pI)

54.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rubis-subs-bind	PF09273	143 - 262	2.1e-30	Rubisco LSMT substrate-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14030
fragaria_vesca	FvH4_4g30820 FvH4_4g30820 FvH4_4g30820
malus_domestica	MD16G1067900.v1.1
prunus_persica	Prupe.1G278900_v2.0.a1
pyrus_communis	pycom13g06090 pycom16g05950
rosa_chinensis	RchiOBHm_Chr4g0439211
rosa_laevigata	RLG00000006287
rosa_multiflora	Rmu_sc0002236.1_g000013 Rmu_sc0006598.1_g000019
rosa_roxburghii	Rroxscaffold_5G00380200
rosa_rugosa	Rorug04G0317100
rosa_samantha	Rh4AG367600 Rh4BG379200 Rh4CG393600 Rh4DG373800
rosa_wichuraiana	Rw0G005650 Rw0G011640 Rw5G028540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	295, 529
AatII	GACGTC	1 cut(s)	228
Acc36I	ACCTGC	3 cut(s)	230, 295, 529
AccBSI	CCGCTC	1 cut(s)	683
AccII	CGCG	1 cut(s)	153
AclWI	GGATC	4 cut(s)	166, 728, 741, 873
AcsI	RAATTY	2 cut(s)	414, 924
AcyI	GRCGYC	2 cut(s)	225, 567
AfaI	GTAC	1 cut(s)	17
AfiI	CCNNNNNNNGG	2 cut(s)	880, 918
AgsI	TTSAA	5 cut(s)	617, 665, 718, 808, 890
AjnI	CCWGG	1 cut(s)	846
AjuI	GAANNNNNNNTTGG	2 cut(s)	455, 487
AluBI	AGCT	5 cut(s)	510, 551, 646, 826, 886
AluI	AGCT	5 cut(s)	510, 551, 646, 826, 886
Alw21I	GWGCWC	2 cut(s)	512, 648
AlwI	GGATC	4 cut(s)	166, 728, 741, 873
AoxI	GGCC	1 cut(s)	871
ApeKI	GCWGC	5 cut(s)	70, 236, 284, 784, 787
ApoI	RAATTY	2 cut(s)	414, 924
AspS9I	GGNCC	2 cut(s)	561, 607
AsuHPI	GGTGA	3 cut(s)	319, 488, 637
AvaII	GGWCC	2 cut(s)	561, 607
BamHI	GGATCC	1 cut(s)	733
BanII	GRGCYC	4 cut(s)	281, 512, 632, 648
BbsI	GAAGAC	2 cut(s)	893, 897
Bbv12I	GWGCWC	2 cut(s)	512, 648
BbvI	GCAGC	5 cut(s)	82, 248, 271, 771, 799
BccI	CCATC	4 cut(s)	62, 95, 713, 791
BciT130I	CCWGG	1 cut(s)	848
BfmI	CTRYAG	1 cut(s)	785
BfuAI	ACCTGC	3 cut(s)	230, 295, 529
BisI	GCNGC	7 cut(s)	71, 237, 285, 542, 785, 788, 857
BlsI	GCNGC	7 cut(s)	72, 238, 286, 543, 786, 789, 858
Bme1390I	CCNGG	1 cut(s)	848
Bme18I	GGWCC	2 cut(s)	561, 607
BmgT120I	GGNCC	2 cut(s)	561, 607
BmiI	GGNNCC	5 cut(s)	278, 562, 608, 735, 910
BmrFI	CCNGG	1 cut(s)	848
BmsI	GCATC	1 cut(s)	658
BoxI	GACNNNNGTC	1 cut(s)	897
BpiI	GAAGAC	2 cut(s)	893, 897
BpuEI	CTTGAG	2 cut(s)	764, 845
BsaAI	YACGTR	1 cut(s)	19
BsaHI	GRCGYC	2 cut(s)	225, 567
BsaJI	CCNNGG	3 cut(s)	151, 354, 737
BsaWI	WCCGGW	1 cut(s)	835
Bsc4I	CCNNNNNNNGG	2 cut(s)	880, 918
Bse118I	RCCGGY	1 cut(s)	622
Bse1I	ACTGG	2 cut(s)	45, 735
Bse3DI	GCAATG	2 cut(s)	346, 453
BseBI	CCWGG	1 cut(s)	848
BseDI	CCNNGG	3 cut(s)	151, 354, 737
BseGI	GGATG	1 cut(s)	54
BseLI	CCNNNNNNNGG	2 cut(s)	880, 918
BseMI	GCAATG	2 cut(s)	346, 453
BseMII	CTCAG	5 cut(s)	18, 139, 336, 450, 927
BseNI	ACTGG	2 cut(s)	45, 735
BseXI	GCAGC	5 cut(s)	82, 248, 271, 771, 799
BsgI	GTGCAG	1 cut(s)	323
Bsh1236I	CGCG	1 cut(s)	153
BshFI	GGCC	1 cut(s)	873
BsiHKAI	GWGCWC	2 cut(s)	512, 648
BsiSI	CCGG	3 cut(s)	623, 690, 836
BslFI	GGGAC	2 cut(s)	574, 620
BslI	CCNNNNNNNGG	2 cut(s)	880, 918
BsmFI	GGGAC	2 cut(s)	574, 620
BsmI	GAATGC	1 cut(s)	137
BsnI	GGCC	1 cut(s)	873
Bsp1286I	GDGCHC	4 cut(s)	281, 512, 632, 648
Bsp143I	GATC	4 cut(s)	128, 171, 733, 865
BspANI	GGCC	1 cut(s)	873
BspCNI	CTCAG	5 cut(s)	19, 138, 337, 451, 928
BspFNI	CGCG	1 cut(s)	153
BspLI	GGNNCC	5 cut(s)	278, 562, 608, 735, 910
BspMAI	CTGCAG	1 cut(s)	789
BspMI	ACCTGC	3 cut(s)	230, 295, 529
BspPI	GGATC	4 cut(s)	166, 728, 741, 873
BspQI	GCTCTTC	1 cut(s)	636
BsrBI	CCGCTC	1 cut(s)	683
BsrDI	GCAATG	2 cut(s)	346, 453
BsrFI	RCCGGY	1 cut(s)	622
BsrI	ACTGG	2 cut(s)	45, 735
BssAI	RCCGGY	1 cut(s)	622
BssECI	CCNNGG	3 cut(s)	151, 354, 737
BssMI	GATC	4 cut(s)	128, 171, 733, 865
BssNI	GRCGYC	2 cut(s)	225, 567
BssT1I	CCWWGG	1 cut(s)	354
Bst2UI	CCWGG	1 cut(s)	848
Bst6I	CTCTTC	2 cut(s)	636, 705
BstACI	GRCGYC	2 cut(s)	225, 567
BstBAI	YACGTR	1 cut(s)	19
BstC8I	GCNNGC	4 cut(s)	298, 302, 512, 673
BstDEI	CTNAG	5 cut(s)	27, 125, 345, 459, 936
BstDSI	CCRYGG	1 cut(s)	151
BstF5I	GGATG	1 cut(s)	54
BstFNI	CGCG	1 cut(s)	153
BstKTI	GATC	4 cut(s)	131, 174, 736, 868
BstMBI	GATC	4 cut(s)	128, 171, 733, 865
BstMWI	GCNNNNNNNGC	2 cut(s)	293, 350
BstNI	CCWGG	1 cut(s)	848
BstNSI	RCATGY	1 cut(s)	218
BstPAI	GACNNNNGTC	1 cut(s)	897
BstSCI	CCNGG	1 cut(s)	846
BstSFI	CTRYAG	1 cut(s)	785
BstUI	CGCG	1 cut(s)	153
BstV1I	GCAGC	5 cut(s)	82, 248, 271, 771, 799
BstV2I	GAAGAC	2 cut(s)	893, 897
BstX2I	RGATCY	2 cut(s)	733, 865
BstXI	CCANNNNNNTGG	1 cut(s)	94
BstYI	RGATCY	2 cut(s)	733, 865
BsuRI	GGCC	1 cut(s)	873
BtgI	CCRYGG	1 cut(s)	151
BtsCI	GGATG	1 cut(s)	54
BtsI	GCAGTG	1 cut(s)	397
BtsIMutI	CAGTG	2 cut(s)	397, 933
BveI	ACCTGC	3 cut(s)	230, 295, 529
Cac8I	GCNNGC	4 cut(s)	298, 302, 512, 673
Cfr10I	RCCGGY	1 cut(s)	622
Cfr13I	GGNCC	2 cut(s)	561, 607
Cfr42I	CCGCGG	1 cut(s)	154
CseI	GACGC	1 cut(s)	575
Csp6I	GTAC	1 cut(s)	16
CspCI	CAANNNNNGTGG	2 cut(s)	507, 542
CviAII	CATG	2 cut(s)	215, 929
CviQI	GTAC	1 cut(s)	16
DdeI	CTNAG	5 cut(s)	27, 125, 345, 459, 936
DpnI	GATC	4 cut(s)	130, 173, 735, 867
DpnII	GATC	4 cut(s)	128, 171, 733, 865
Eam1104I	CTCTTC	2 cut(s)	636, 705
EarI	CTCTTC	2 cut(s)	636, 705
Ecl136II	GAGCTC	2 cut(s)	510, 646
Eco130I	CCWWGG	1 cut(s)	354
Eco24I	GRGCYC	4 cut(s)	281, 512, 632, 648
Eco32I	GATATC	1 cut(s)	601
Eco47I	GGWCC	2 cut(s)	561, 607
Eco53kI	GAGCTC	2 cut(s)	510, 646
EcoICRI	GAGCTC	2 cut(s)	510, 646
EcoRII	CCWGG	1 cut(s)	846
EcoRV	GATATC	1 cut(s)	601
EcoT14I	CCWWGG	1 cut(s)	354
EcoT22I	ATGCAT	1 cut(s)	220
EcoT38I	GRGCYC	4 cut(s)	281, 512, 632, 648
ErhI	CCWWGG	1 cut(s)	354
FaeI	CATG	2 cut(s)	218, 932
FaqI	GGGAC	2 cut(s)	574, 620
FatI	CATG	2 cut(s)	214, 928
FauI	CCCGC	4 cut(s)	152, 289, 289, 872
FauNDI	CATATG	2 cut(s)	220, 650
Fnu4HI	GCNGC	7 cut(s)	71, 237, 285, 542, 785, 788, 857
FokI	GGATG	1 cut(s)	41
FriOI	GRGCYC	4 cut(s)	281, 512, 632, 648
Fsp4HI	GCNGC	7 cut(s)	71, 237, 285, 542, 785, 788, 857
GluI	GCNGC	7 cut(s)	71, 237, 285, 542, 785, 788, 857
HaeIII	GGCC	1 cut(s)	873
HapII	CCGG	3 cut(s)	623, 690, 836
HgaI	GACGC	1 cut(s)	575
Hin1I	GRCGYC	2 cut(s)	225, 567
Hin1II	CATG	2 cut(s)	218, 932
HinfI	GANTC	7 cut(s)	160, 366, 374, 529, 581, 722, 818
HpaII	CCGG	3 cut(s)	623, 690, 836
HphI	GGTGA	3 cut(s)	319, 488, 637
Hpy188I	TCNGA	6 cut(s)	119, 128, 159, 421, 738, 823
Hpy188III	TCNNGA	2 cut(s)	592, 665
Hpy99I	CGWCG	1 cut(s)	569
HpyAV	CCTTC	4 cut(s)	90, 580, 623, 772
HpyCH4IV	ACGT	2 cut(s)	18, 225
HpyCH4V	TGCA	8 cut(s)	182, 218, 304, 485, 524, 654, 675, 787
HpyF10VI	GCNNNNNNNGC	2 cut(s)	293, 350
HpyF3I	CTNAG	5 cut(s)	27, 125, 345, 459, 936
HpySE526I	ACGT	2 cut(s)	18, 225
Hsp92I	GRCGYC	2 cut(s)	225, 567
Hsp92II	CATG	2 cut(s)	218, 932
KspI	CCGCGG	1 cut(s)	154
Kzo9I	GATC	4 cut(s)	128, 171, 733, 865
LguI	GCTCTTC	1 cut(s)	636
LmnI	GCTCC	3 cut(s)	233, 276, 883
Lsp1109I	GCAGC	5 cut(s)	82, 248, 271, 771, 799
LweI	GCATC	1 cut(s)	658
MaeII	ACGT	2 cut(s)	18, 225
MaeIII	GTNAC	1 cut(s)	931
MalI	GATC	4 cut(s)	130, 173, 735, 867
MbiI	CCGCTC	1 cut(s)	683
MboI	GATC	4 cut(s)	128, 171, 733, 865
MboII	GAAGA	7 cut(s)	97, 221, 653, 722, 787, 893, 902
MflI	RGATCY	2 cut(s)	733, 865
MhlI	GDGCHC	4 cut(s)	281, 512, 632, 648
MluCI	AATT	2 cut(s)	414, 924
MmeI	TCCRAC	2 cut(s)	402, 736
Mph1103I	ATGCAT	1 cut(s)	220
MseI	TTAA	1 cut(s)	404
MslI	CAYNNNNRTG	3 cut(s)	92, 219, 795
MspA1I	CMGCKG	2 cut(s)	153, 284
MspI	CCGG	3 cut(s)	623, 690, 836
MspR9I	CCNGG	1 cut(s)	848
Mva1269I	GAATGC	1 cut(s)	137
MvaI	CCWGG	1 cut(s)	848
MvnI	CGCG	1 cut(s)	153
MwoI	GCNNNNNNNGC	2 cut(s)	293, 350
NdeI	CATATG	2 cut(s)	220, 650
NdeII	GATC	4 cut(s)	128, 171, 733, 865
NlaIII	CATG	2 cut(s)	218, 932
NlaIV	GGNNCC	5 cut(s)	278, 562, 608, 735, 910
NmeAIII	GCCGAG	1 cut(s)	849
NmuCI	GTSAC	1 cut(s)	931
NsiI	ATGCAT	1 cut(s)	220
NspI	RCATGY	1 cut(s)	218
PaqCI	CACCTGC	2 cut(s)	295, 529
PciSI	GCTCTTC	1 cut(s)	636
PctI	GAATGC	1 cut(s)	137
PfeI	GAWTC	7 cut(s)	160, 366, 374, 529, 581, 722, 818
PkrI	GCNGC	7 cut(s)	72, 238, 286, 543, 786, 789, 858
Ppu21I	YACGTR	1 cut(s)	19
PshAI	GACNNNNGTC	1 cut(s)	897
Psp124BI	GAGCTC	2 cut(s)	512, 648
Psp6I	CCWGG	1 cut(s)	846
PspGI	CCWGG	1 cut(s)	846
PspN4I	GGNNCC	5 cut(s)	278, 562, 608, 735, 910
PspPI	GGNCC	2 cut(s)	561, 607
PstI	CTGCAG	1 cut(s)	789
PsuI	RGATCY	2 cut(s)	733, 865
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
RseI	CAYNNNNRTG	3 cut(s)	92, 219, 795
SacI	GAGCTC	2 cut(s)	512, 648
SacII	CCGCGG	1 cut(s)	154
SapI	GCTCTTC	1 cut(s)	636
SaqAI	TTAA	1 cut(s)	404
SatI	GCNGC	7 cut(s)	71, 237, 285, 542, 785, 788, 857
Sau3AI	GATC	4 cut(s)	128, 171, 733, 865
Sau96I	GGNCC	2 cut(s)	561, 607
ScrFI	CCNGG	1 cut(s)	848
SduI	GDGCHC	4 cut(s)	281, 512, 632, 648
SfaNI	GCATC	1 cut(s)	658
SfcI	CTRYAG	1 cut(s)	785
Sfr303I	CCGCGG	1 cut(s)	154
SgrBI	CCGCGG	1 cut(s)	154
SinI	GGWCC	2 cut(s)	561, 607
SmiMI	CAYNNNNRTG	3 cut(s)	92, 219, 795
SmlI	CTYRAG	2 cut(s)	743, 860
SmoI	CTYRAG	2 cut(s)	743, 860
Sse9I	AATT	2 cut(s)	414, 924
SstI	GAGCTC	2 cut(s)	512, 648
StyD4I	CCNGG	1 cut(s)	846
StyI	CCWWGG	1 cut(s)	354
TaiI	ACGT	2 cut(s)	21, 228
TaqI	TCGA	3 cut(s)	131, 492, 708
TaqII	GACCGA	2 cut(s)	444, 578
TasI	AATT	2 cut(s)	414, 924
TauI	GCSGC	2 cut(s)	544, 859
TfiI	GAWTC	7 cut(s)	160, 366, 374, 529, 581, 722, 818
Tru1I	TTAA	1 cut(s)	404
Tru9I	TTAA	1 cut(s)	404
TscAI	CASTG	2 cut(s)	397, 940
TseFI	GTSAC	1 cut(s)	931
TseI	GCWGC	5 cut(s)	70, 236, 284, 784, 787
Tsp45I	GTSAC	1 cut(s)	931
TspDTI	ATGAA	2 cut(s)	654, 917
TspGWI	ACGGA	2 cut(s)	289, 378
TspRI	CASTG	2 cut(s)	397, 940
VpaK11BI	GGWCC	2 cut(s)	561, 607
XapI	RAATTY	2 cut(s)	414, 924
XceI	RCATGY	1 cut(s)	218
ZraI	GACGTC	1 cut(s)	226
Zsp2I	ATGCAT	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.