Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006598.1

Orthogroup ID

OG0010211

Physical Location & Seq

Genomic Coordinates Forward (+)

65457 .. 66611

Gene Structure 1155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006598.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

atggaagtcactctgttcgctctatcttcctccactttcctctcctctcctctcaaaccaaaactcaaaaacctctcctccctaacaaaacgaccaacccttcatctcagcaacaaagctcttccctttcgcgtcacctcactctctgtcccccaatgcgacacgtcactccctccggcggttcagaccttctggcagtggctccgggacgaaggcgtggtctccgccaagacacttgcaaaaccagctttggtccccgaagggatgggactcgtggctcacagagacattgcgagaaacgaggttgttttggaggtcccaaagaggctgtggataaacccggatgctgtgtcagcctcggagattggaaatgtgtgcagtggtttgaagccttgggtgtctgtggctctgtttttgctcagagagaagtctagggacgactcgaagtggaggctttactttgatattctcccggagagtactaactcgactgtgttctggtcagaagaggagcttgatgagcttcaaggaactcaacttttgagcacaacaattggtgtgaaagagtatgtgcagagtgagtttcagaaagtggaacaagaaatcatcctacctaacaagaagtttttcccttctcctatcacattggatgacttcttttgggcatttggtatcctgagatctcgggcattctcgcgcctccgtggtcaaagtcttgttttgatcccattcgccgactttgtaagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006479 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016278 GO:0016279 GO:0016740 GO:0016741 GO:0018022 GO:0018023 GO:0018026 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

249

Amino Acids

28.06

Weight (kDa)

7.74

Isoelectric Point (pI)

53.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14030
fragaria_vesca	FvH4_4g30820 FvH4_4g30820 FvH4_4g30820
malus_domestica	MD16G1067900.v1.1
prunus_persica	Prupe.1G278900_v2.0.a1
pyrus_communis	pycom13g06090 pycom16g05950
rosa_chinensis	RchiOBHm_Chr4g0439211
rosa_laevigata	RLG00000006287
rosa_multiflora	Rmu_sc0002236.1_g000013 Rmu_sc0006598.1_g000019
rosa_roxburghii	Rroxscaffold_5G00380200
rosa_rugosa	Rorug04G0317100
rosa_samantha	Rh4AG367600 Rh4BG379200 Rh4CG393600 Rh4DG373800
rosa_wichuraiana	Rw0G005650 Rw0G011640 Rw5G028540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	132, 697
AciI	CCGC	2 cut(s)	179, 225
AclWI	GGATC	1 cut(s)	718
AfaI	GTAC	1 cut(s)	481
AfiI	CCNNNNNNNGG	1 cut(s)	178
AflIII	ACRYGT	1 cut(s)	162
AgsI	TTSAA	2 cut(s)	388, 527
AjiI	CACGTC	1 cut(s)	165
AluBI	AGCT	5 cut(s)	119, 248, 514, 523, 747
AluI	AGCT	5 cut(s)	119, 248, 514, 523, 747
Alw21I	GWGCWC	1 cut(s)	548
Alw26I	GTCTC	2 cut(s)	226, 279
AlwI	GGATC	1 cut(s)	718
Ama87I	CYCGRG	1 cut(s)	684
ArsI	GACNNNNNNTTYG	2 cut(s)	204, 236
Asp700I	GAANNNNTTC	1 cut(s)	626
AspLEI	GCGC	1 cut(s)	699
AspS9I	GGNCC	2 cut(s)	253, 316
AsuC2I	CCSGG	3 cut(s)	206, 341, 473
AsuHPI	GGTGA	1 cut(s)	127
AvaI	CYCGRG	1 cut(s)	684
AvaII	GGWCC	2 cut(s)	253, 316
BauI	CACGAG	1 cut(s)	272
Bbv12I	GWGCWC	1 cut(s)	548
BccI	CCATC	1 cut(s)	259
BciVI	GTATCC	1 cut(s)	683
BcnI	CCSGG	3 cut(s)	206, 341, 473
BcoDI	GTCTC	2 cut(s)	226, 279
BfaI	CTAG	1 cut(s)	432
BfuI	GTATCC	1 cut(s)	683
BglII	AGATCT	1 cut(s)	680
BmcAI	AGTACT	1 cut(s)	481
Bme1390I	CCNGG	3 cut(s)	206, 341, 473
Bme18I	GGWCC	2 cut(s)	253, 316
BmeT110I	CYCGRG	1 cut(s)	684
BmgBI	CACGTC	1 cut(s)	165
BmgT120I	GGNCC	2 cut(s)	253, 316
BmiI	GGNNCC	3 cut(s)	203, 255, 318
BmrFI	CCNGG	3 cut(s)	206, 341, 473
BmsI	GCATC	1 cut(s)	334
BpuMI	CCSGG	3 cut(s)	206, 341, 473
BsaI	GGTCTC	1 cut(s)	226
BsaJI	CCNNGG	3 cut(s)	357, 392, 703
BsaXI	ACNNNNNCTCC	2 cut(s)	62, 92
Bsc4I	CCNNNNNNNGG	1 cut(s)	178
Bse3DI	GCAATG	1 cut(s)	288
BseDI	CCNNGG	3 cut(s)	357, 392, 703
BseGI	GGATG	4 cut(s)	270, 349, 606, 655
BseLI	CCNNNNNNNGG	1 cut(s)	178
BseMI	GCAATG	1 cut(s)	288
BseMII	CTCAG	3 cut(s)	121, 433, 668
BseRI	GAGGAG	4 cut(s)	34, 39, 67, 524
BsgI	GTGCAG	2 cut(s)	397, 593
Bsh1236I	CGCG	2 cut(s)	132, 697
BsiHKAI	GWGCWC	1 cut(s)	548
BsiHKCI	CYCGRG	1 cut(s)	684
BsiSI	CCGG	4 cut(s)	176, 205, 341, 473
BslFI	GGGAC	6 cut(s)	134, 221, 239, 282, 302, 449
BslI	CCNNNNNNNGG	1 cut(s)	178
BsmAI	GTCTC	2 cut(s)	226, 279
BsmFI	GGGAC	6 cut(s)	134, 221, 239, 282, 302, 449
BsmI	GAATGC	1 cut(s)	689
Bso31I	GGTCTC	1 cut(s)	226
BsoBI	CYCGRG	1 cut(s)	684
Bsp1286I	GDGCHC	1 cut(s)	548
Bsp143I	GATC	2 cut(s)	680, 723
BspACI	CCGC	2 cut(s)	179, 225
BspCNI	CTCAG	3 cut(s)	120, 432, 669
BspFNI	CGCG	2 cut(s)	132, 697
BspLI	GGNNCC	3 cut(s)	203, 255, 318
BspPI	GGATC	1 cut(s)	718
BspQI	GCTCTTC	1 cut(s)	126
BspTNI	GGTCTC	1 cut(s)	226
BsrDI	GCAATG	1 cut(s)	288
BssECI	CCNNGG	3 cut(s)	357, 392, 703
BssMI	GATC	2 cut(s)	680, 723
BssSI	CACGAG	1 cut(s)	272
BssT1I	CCWWGG	1 cut(s)	392
Bst2BI	CACGAG	1 cut(s)	272
Bst4CI	ACNGT	1 cut(s)	493
Bst6I	CTCTTC	2 cut(s)	126, 501
BstDEI	CTNAG	3 cut(s)	107, 419, 677
BstDSI	CCRYGG	1 cut(s)	703
BstF5I	GGATG	4 cut(s)	270, 349, 606, 655
BstFNI	CGCG	2 cut(s)	132, 697
BstHHI	GCGC	1 cut(s)	699
BstKTI	GATC	2 cut(s)	683, 726
BstMAI	GTCTC	2 cut(s)	226, 279
BstMBI	GATC	2 cut(s)	680, 723
BstMWI	GCNNNNNNNGC	3 cut(s)	245, 353, 520
BstSCI	CCNGG	3 cut(s)	204, 339, 471
BstUI	CGCG	2 cut(s)	132, 697
BstX2I	RGATCY	1 cut(s)	680
BstYI	RGATCY	1 cut(s)	680
BsuI	GTATCC	1 cut(s)	683
BtgI	CCRYGG	1 cut(s)	703
BtrI	CACGTC	1 cut(s)	165
BtsCI	GGATG	4 cut(s)	270, 349, 606, 655
BtsI	GCAGTG	2 cut(s)	203, 385
BtsIMutI	CAGTG	2 cut(s)	203, 385
CfoI	GCGC	1 cut(s)	699
Cfr13I	GGNCC	2 cut(s)	253, 316
CseI	GACGC	1 cut(s)	121
Csp6I	GTAC	1 cut(s)	480
CviQI	GTAC	1 cut(s)	480
DdeI	CTNAG	3 cut(s)	107, 419, 677
DpnI	GATC	2 cut(s)	682, 725
DpnII	GATC	2 cut(s)	680, 723
Eam1104I	CTCTTC	2 cut(s)	126, 501
EarI	CTCTTC	2 cut(s)	126, 501
EciI	GGCGGA	1 cut(s)	214
Eco130I	CCWWGG	1 cut(s)	392
Eco31I	GGTCTC	1 cut(s)	226
Eco47I	GGWCC	2 cut(s)	253, 316
Eco88I	CYCGRG	1 cut(s)	684
EcoO109I	RGGNCCY	1 cut(s)	316
EcoT14I	CCWWGG	1 cut(s)	392
ErhI	CCWWGG	1 cut(s)	392
FaiI	YATR	1 cut(s)	570
FalI	AAGNNNNNCTT	2 cut(s)	498, 530
FaqI	GGGAC	6 cut(s)	134, 221, 239, 282, 302, 449
FokI	GGATG	4 cut(s)	277, 356, 593, 662
FspBI	CTAG	1 cut(s)	432
GlaI	GCGC	1 cut(s)	698
HapII	CCGG	4 cut(s)	176, 205, 341, 473
HgaI	GACGC	1 cut(s)	121
HhaI	GCGC	1 cut(s)	699
Hin6I	GCGC	1 cut(s)	697
HinP1I	GCGC	1 cut(s)	697
HinfI	GANTC	2 cut(s)	270, 440
HpaII	CCGG	4 cut(s)	176, 205, 341, 473
HphI	GGTGA	1 cut(s)	127
Hpy188I	TCNGA	5 cut(s)	186, 361, 422, 505, 588
Hpy188III	TCNNGA	1 cut(s)	676
HpyAV	CCTTC	5 cut(s)	110, 199, 206, 254, 642
HpyCH4III	ACNGT	1 cut(s)	493
HpyCH4IV	ACGT	1 cut(s)	164
HpyCH4V	TGCA	3 cut(s)	239, 378, 574
HpyF10VI	GCNNNNNNNGC	3 cut(s)	245, 353, 520
HpyF3I	CTNAG	3 cut(s)	107, 419, 677
HpySE526I	ACGT	1 cut(s)	164
HspAI	GCGC	1 cut(s)	697
Kzo9I	GATC	2 cut(s)	680, 723
LguI	GCTCTTC	1 cut(s)	126
LmnI	GCTCC	2 cut(s)	207, 511
LpnPI	CCDG	8 cut(s)	178, 189, 218, 258, 354, 484, 486, 689
LweI	GCATC	1 cut(s)	334
MaeI	CTAG	1 cut(s)	432
MaeII	ACGT	1 cut(s)	164
MaeIII	GTNAC	3 cut(s)	7, 133, 165
MalI	GATC	2 cut(s)	682, 725
MboI	GATC	2 cut(s)	680, 723
MboII	GAAGA	3 cut(s)	18, 113, 518
MfeI	CAATTG	1 cut(s)	552
MflI	RGATCY	1 cut(s)	680
MhlI	GDGCHC	1 cut(s)	548
MluCI	AATT	1 cut(s)	552
MlyI	GAGTC	2 cut(s)	264, 434
MroXI	GAANNNNTTC	1 cut(s)	626
MspI	CCGG	4 cut(s)	176, 205, 341, 473
MspR9I	CCNGG	3 cut(s)	206, 341, 473
MunI	CAATTG	1 cut(s)	552
Mva1269I	GAATGC	1 cut(s)	689
MvnI	CGCG	2 cut(s)	132, 697
MwoI	GCNNNNNNNGC	3 cut(s)	245, 353, 520
NciI	CCSGG	3 cut(s)	206, 341, 473
NdeII	GATC	2 cut(s)	680, 723
NlaIV	GGNNCC	3 cut(s)	203, 255, 318
NmuCI	GTSAC	3 cut(s)	7, 133, 165
PciSI	GCTCTTC	1 cut(s)	126
PctI	GAATGC	1 cut(s)	689
PdmI	GAANNNNTTC	1 cut(s)	626
PfoI	TCCNGGA	2 cut(s)	204, 471
PleI	GAGTC	2 cut(s)	264, 434
PpsI	GAGTC	2 cut(s)	264, 434
PpuMI	RGGWCCY	1 cut(s)	316
Psp5II	RGGWCCY	1 cut(s)	316
PspN4I	GGNNCC	3 cut(s)	203, 255, 318
PspPI	GGNCC	2 cut(s)	253, 316
PspPPI	RGGWCCY	1 cut(s)	316
PsuI	RGATCY	1 cut(s)	680
RsaI	GTAC	1 cut(s)	481
RsaNI	GTAC	1 cut(s)	480
SapI	GCTCTTC	1 cut(s)	126
Sau3AI	GATC	2 cut(s)	680, 723
Sau96I	GGNCC	2 cut(s)	253, 316
ScaI	AGTACT	1 cut(s)	481
SchI	GAGTC	2 cut(s)	264, 434
ScrFI	CCNGG	3 cut(s)	206, 341, 473
SduI	GDGCHC	1 cut(s)	548
SfaNI	GCATC	1 cut(s)	334
SinI	GGWCC	2 cut(s)	253, 316
Sse9I	AATT	1 cut(s)	552
SsiI	CCGC	2 cut(s)	179, 225
SspMI	CTAG	1 cut(s)	432
StyD4I	CCNGG	3 cut(s)	204, 339, 471
StyI	CCWWGG	1 cut(s)	392
TaaI	ACNGT	1 cut(s)	493
TaiI	ACGT	1 cut(s)	167
TaqI	TCGA	2 cut(s)	443, 488
TasI	AATT	1 cut(s)	552
TatI	WGTACW	1 cut(s)	479
TscAI	CASTG	2 cut(s)	203, 385
TseFI	GTSAC	3 cut(s)	7, 133, 165
Tsp45I	GTSAC	3 cut(s)	7, 133, 165
TspDTI	ATGAA	1 cut(s)	92
TspGWI	ACGGA	1 cut(s)	692
TspRI	CASTG	2 cut(s)	203, 385
VpaK11BI	GGWCC	2 cut(s)	253, 316
XcmI	CCANNNNNNNNNTGG	1 cut(s)	327
XmnI	GAANNNNTTC	1 cut(s)	626
XspI	CTAG	1 cut(s)	432
ZrmI	AGTACT	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.