Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0010211

Physical Location & Seq

Genomic Coordinates Reverse (-)

3787210 .. 3787956

Gene Structure 747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g05950.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGCAAACACCTCCATCTTCGAACGTTATGATATCTTGGTGGTTTCCTTGGATATCAAGTAACGGATTCTTTTGTCAGATTAACCACAGTTCAAGCATAACCACAGAAGAACATGCATATGAGGTCAAAGGTGCAGCAGGTCTTTTCTCTTGGGATTATCTGTTTTCGCTACGGAGCCCCGCTACTGTCAAAGCTGGTGAGCAGCCTGTGCTCTGCAGCAGGCATCTCATGCTTCTCATATCTGGACAGGTTTTCATCCAATATGATATAAACAAGAGCAATGCTGAGTTTGCTTTGGATTACGGATTCCTGGATTCCAACGCTAATCGCAATGGATTTACCTTAACGCTGGAAATATCCAAATCAGACCCATTTTACGAGGACAAGCTGGACATTGCCGAGACAAATGGTTTGGGTGCAACTGCGTACTTCGACATATTTTTGGAGAGTTCGCTTCCACCTGCATTGATTCCTTATCTGCGGCTGGTAGCTCTTGGAGGAACCGACGCTTTCCTCTTGGAATCTATATTCAGGAACGATATCTGGGGCCACCTTCAACTGCCGGTGAGCCCTGCCAACGAAGAGCTCATATGCAGAGTAGTCCAAGACGCCTGCAAATCCGCTCTTTCCGGCTATCCCACCACTATCGAAGAGGTATGTCTTCATTCCTTAATACATCTGCATGCTTTAGTACATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006479 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016278 GO:0016279 GO:0016740 GO:0016741 GO:0018022 GO:0018023 GO:0018026 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

234

Amino Acids

25.94

Weight (kDa)

4.85

Isoelectric Point (pI)

48.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14030
fragaria_vesca	FvH4_4g30820 FvH4_4g30820 FvH4_4g30820
malus_domestica	MD16G1067900.v1.1
prunus_persica	Prupe.1G278900_v2.0.a1
pyrus_communis	pycom13g06090 pycom16g05950
rosa_chinensis	RchiOBHm_Chr4g0439211
rosa_laevigata	RLG00000006287
rosa_multiflora	Rmu_sc0002236.1_g000013 Rmu_sc0006598.1_g000019
rosa_roxburghii	Rroxscaffold_5G00380200
rosa_rugosa	Rorug04G0317100
rosa_samantha	Rh4AG367600 Rh4BG379200 Rh4CG393600 Rh4DG373800
rosa_wichuraiana	Rw0G005650 Rw0G011640 Rw5G028540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	469
Acc36I	ACCTGC	2 cut(s)	128, 469
AccBSI	CCGCTC	1 cut(s)	623
AciI	CCGC	3 cut(s)	180, 481, 621
AclI	AACGTT	1 cut(s)	24
AcyI	GRCGYC	1 cut(s)	609
AfaI	GTAC	2 cut(s)	428, 693
AgsI	TTSAA	2 cut(s)	93, 557
AjnI	CCWGG	1 cut(s)	309
AluBI	AGCT	4 cut(s)	194, 388, 491, 586
AluI	AGCT	4 cut(s)	194, 388, 491, 586
Alw21I	GWGCWC	2 cut(s)	213, 588
Alw26I	GTCTC	1 cut(s)	395
AoxI	GGCC	1 cut(s)	547
ApeKI	GCWGC	3 cut(s)	134, 202, 216
ArsI	GACNNNNNNTTYG	2 cut(s)	394, 426
AspS9I	GGNCC	1 cut(s)	547
AsuHPI	GGTGA	2 cut(s)	209, 577
AsuII	TTCGAA	1 cut(s)	20
BanII	GRGCYC	3 cut(s)	179, 572, 588
BbsI	GAAGAC	1 cut(s)	653
Bbv12I	GWGCWC	2 cut(s)	213, 588
BbvI	GCAGC	3 cut(s)	146, 214, 228
BccI	CCATC	1 cut(s)	22
BciT130I	CCWGG	1 cut(s)	311
BcoDI	GTCTC	1 cut(s)	395
BfmI	CTRYAG	1 cut(s)	214
BfuAI	ACCTGC	2 cut(s)	128, 469
BisI	GCNGC	4 cut(s)	135, 203, 217, 482
BlsI	GCNGC	4 cut(s)	136, 204, 218, 483
Bme1390I	CCNGG	1 cut(s)	311
BmgT120I	GGNCC	1 cut(s)	547
BmiI	GGNNCC	3 cut(s)	176, 502, 548
BmrFI	CCNGG	1 cut(s)	311
BmsI	GCATC	1 cut(s)	232
BpiI	GAAGAC	1 cut(s)	653
Bpu14I	TTCGAA	1 cut(s)	20
BsaHI	GRCGYC	1 cut(s)	609
BsaJI	CCNNGG	1 cut(s)	47
Bse118I	RCCGGY	1 cut(s)	562
Bse3DI	GCAATG	3 cut(s)	286, 337, 393
BseBI	CCWGG	1 cut(s)	311
BseDI	CCNNGG	1 cut(s)	47
BseGI	GGATG	1 cut(s)	255
BseMI	GCAATG	3 cut(s)	286, 337, 393
BseMII	CTCAG	1 cut(s)	276
BseXI	GCAGC	3 cut(s)	146, 214, 228
BsgI	GTGCAG	1 cut(s)	153
BshFI	GGCC	1 cut(s)	549
BsiHKAI	GWGCWC	2 cut(s)	213, 588
BsiSI	CCGG	2 cut(s)	563, 630
BsmAI	GTCTC	1 cut(s)	395
BsnI	GGCC	1 cut(s)	549
Bsp119I	TTCGAA	1 cut(s)	20
Bsp1286I	GDGCHC	4 cut(s)	179, 213, 572, 588
BspACI	CCGC	3 cut(s)	180, 481, 621
BspANI	GGCC	1 cut(s)	549
BspCNI	CTCAG	1 cut(s)	277
BspLI	GGNNCC	3 cut(s)	176, 502, 548
BspMAI	CTGCAG	1 cut(s)	218
BspMI	ACCTGC	2 cut(s)	128, 469
BspQI	GCTCTTC	1 cut(s)	576
BspT104I	TTCGAA	1 cut(s)	20
BsrBI	CCGCTC	1 cut(s)	623
BsrDI	GCAATG	3 cut(s)	286, 337, 393
BsrFI	RCCGGY	1 cut(s)	562
BssAI	RCCGGY	1 cut(s)	562
BssECI	CCNNGG	1 cut(s)	47
BssNI	GRCGYC	1 cut(s)	609
BssT1I	CCWWGG	1 cut(s)	47
Bst2UI	CCWGG	1 cut(s)	311
Bst4CI	ACNGT	2 cut(s)	89, 187
Bst6I	CTCTTC	2 cut(s)	576, 645
BstACI	GRCGYC	1 cut(s)	609
BstAPI	GCANNNNNTGC	2 cut(s)	208, 229
BstBI	TTCGAA	1 cut(s)	20
BstC8I	GCNNGC	3 cut(s)	221, 613, 684
BstDEI	CTNAG	1 cut(s)	285
BstF5I	GGATG	1 cut(s)	255
BstMAI	GTCTC	1 cut(s)	395
BstMWI	GCNNNNNNNGC	3 cut(s)	208, 229, 290
BstNI	CCWGG	1 cut(s)	311
BstNSI	RCATGY	2 cut(s)	116, 686
BstSCI	CCNGG	1 cut(s)	309
BstSFI	CTRYAG	1 cut(s)	214
BstV1I	GCAGC	3 cut(s)	146, 214, 228
BstV2I	GAAGAC	1 cut(s)	653
BsuRI	GGCC	1 cut(s)	549
BtsCI	GGATG	1 cut(s)	255
BveI	ACCTGC	2 cut(s)	128, 469
Cac8I	GCNNGC	3 cut(s)	221, 613, 684
Cfr10I	RCCGGY	1 cut(s)	562
Cfr13I	GGNCC	1 cut(s)	547
CseI	GACGC	2 cut(s)	515, 617
Csp6I	GTAC	2 cut(s)	427, 692
CspCI	CAANNNNNGTGG	2 cut(s)	447, 482
CviAII	CATG	3 cut(s)	113, 229, 683
CviQI	GTAC	2 cut(s)	427, 692
DdeI	CTNAG	1 cut(s)	285
Eam1104I	CTCTTC	2 cut(s)	576, 645
EarI	CTCTTC	2 cut(s)	576, 645
Ecl136II	GAGCTC	1 cut(s)	586
Eco130I	CCWWGG	1 cut(s)	47
Eco24I	GRGCYC	3 cut(s)	179, 572, 588
Eco32I	GATATC	3 cut(s)	33, 54, 541
Eco53kI	GAGCTC	1 cut(s)	586
EcoICRI	GAGCTC	1 cut(s)	586
EcoRII	CCWGG	1 cut(s)	309
EcoRV	GATATC	3 cut(s)	33, 54, 541
EcoT14I	CCWWGG	1 cut(s)	47
EcoT22I	ATGCAT	1 cut(s)	118
EcoT38I	GRGCYC	3 cut(s)	179, 572, 588
ErhI	CCWWGG	1 cut(s)	47
FaeI	CATG	3 cut(s)	116, 232, 686
FatI	CATG	3 cut(s)	112, 228, 682
FauI	CCCGC	1 cut(s)	187
FauNDI	CATATG	2 cut(s)	118, 590
Fnu4HI	GCNGC	4 cut(s)	135, 203, 217, 482
FokI	GGATG	1 cut(s)	242
FriOI	GRGCYC	3 cut(s)	179, 572, 588
Fsp4HI	GCNGC	4 cut(s)	135, 203, 217, 482
GluI	GCNGC	4 cut(s)	135, 203, 217, 482
HaeIII	GGCC	1 cut(s)	549
HapII	CCGG	2 cut(s)	563, 630
HgaI	GACGC	2 cut(s)	515, 617
Hin1I	GRCGYC	1 cut(s)	609
Hin1II	CATG	3 cut(s)	116, 232, 686
HinfI	GANTC	5 cut(s)	66, 306, 314, 469, 521
HpaII	CCGG	2 cut(s)	563, 630
HphI	GGTGA	2 cut(s)	209, 577
Hpy188I	TCNGA	2 cut(s)	78, 367
Hpy188III	TCNNGA	2 cut(s)	243, 532
Hpy99I	CGWCG	1 cut(s)	509
HpyAV	CCTTC	1 cut(s)	563
HpyCH4III	ACNGT	2 cut(s)	89, 187
HpyCH4IV	ACGT	1 cut(s)	24
HpyCH4V	TGCA	9 cut(s)	4, 116, 134, 216, 419, 464, 594, 615, 682
HpyF10VI	GCNNNNNNNGC	3 cut(s)	208, 229, 290
HpyF3I	CTNAG	1 cut(s)	285
HpySE526I	ACGT	1 cut(s)	24
Hsp92I	GRCGYC	1 cut(s)	609
Hsp92II	CATG	3 cut(s)	116, 232, 686
LguI	GCTCTTC	1 cut(s)	576
LmnI	GCTCC	1 cut(s)	174
Lsp1109I	GCAGC	3 cut(s)	146, 214, 228
LweI	GCATC	1 cut(s)	232
MaeII	ACGT	1 cut(s)	24
MaeIII	GTNAC	1 cut(s)	59
MbiI	CCGCTC	1 cut(s)	623
MboII	GAAGA	5 cut(s)	9, 119, 593, 653, 662
MhlI	GDGCHC	4 cut(s)	179, 213, 572, 588
MmeI	TCCRAC	1 cut(s)	342
MnlI	CCTC	6 cut(s)	21, 115, 373, 491, 524, 646
Mph1103I	ATGCAT	1 cut(s)	118
MseI	TTAA	3 cut(s)	81, 344, 671
MslI	CAYNNNNRTG	2 cut(s)	117, 681
MspI	CCGG	2 cut(s)	563, 630
MspR9I	CCNGG	1 cut(s)	311
MvaI	CCWGG	1 cut(s)	311
MwoI	GCNNNNNNNGC	3 cut(s)	208, 229, 290
NdeI	CATATG	2 cut(s)	118, 590
NlaIII	CATG	3 cut(s)	116, 232, 686
NlaIV	GGNNCC	3 cut(s)	176, 502, 548
NmeAIII	GCCGAG	1 cut(s)	424
NsiI	ATGCAT	1 cut(s)	118
NspI	RCATGY	2 cut(s)	116, 686
NspV	TTCGAA	1 cut(s)	20
PaeI	GCATGC	1 cut(s)	686
PaqCI	CACCTGC	1 cut(s)	469
PciSI	GCTCTTC	1 cut(s)	576
PfeI	GAWTC	5 cut(s)	66, 306, 314, 469, 521
PfoI	TCCNGGA	1 cut(s)	309
PkrI	GCNGC	4 cut(s)	136, 204, 218, 483
Psp124BI	GAGCTC	1 cut(s)	588
Psp1406I	AACGTT	1 cut(s)	24
Psp6I	CCWGG	1 cut(s)	309
PspGI	CCWGG	1 cut(s)	309
PspN4I	GGNNCC	3 cut(s)	176, 502, 548
PspPI	GGNCC	1 cut(s)	547
PstI	CTGCAG	1 cut(s)	218
RsaI	GTAC	2 cut(s)	428, 693
RsaNI	GTAC	2 cut(s)	427, 692
RseI	CAYNNNNRTG	2 cut(s)	117, 681
SacI	GAGCTC	1 cut(s)	588
SapI	GCTCTTC	1 cut(s)	576
SaqAI	TTAA	3 cut(s)	81, 344, 671
SatI	GCNGC	4 cut(s)	135, 203, 217, 482
Sau96I	GGNCC	1 cut(s)	547
ScrFI	CCNGG	1 cut(s)	311
SduI	GDGCHC	4 cut(s)	179, 213, 572, 588
SfaNI	GCATC	1 cut(s)	232
SfcI	CTRYAG	1 cut(s)	214
SfuI	TTCGAA	1 cut(s)	20
SmiMI	CAYNNNNRTG	2 cut(s)	117, 681
SphI	GCATGC	1 cut(s)	686
SsiI	CCGC	3 cut(s)	180, 481, 621
SstI	GAGCTC	1 cut(s)	588
StyD4I	CCNGG	1 cut(s)	309
StyI	CCWWGG	1 cut(s)	47
TaaI	ACNGT	2 cut(s)	89, 187
TaiI	ACGT	1 cut(s)	27
TaqI	TCGA	3 cut(s)	20, 432, 648
TatI	WGTACW	1 cut(s)	691
TauI	GCSGC	1 cut(s)	484
TfiI	GAWTC	5 cut(s)	66, 306, 314, 469, 521
Tru1I	TTAA	3 cut(s)	81, 344, 671
Tru9I	TTAA	3 cut(s)	81, 344, 671
TseI	GCWGC	3 cut(s)	134, 202, 216
TspDTI	ATGAA	2 cut(s)	244, 653
TspGWI	ACGGA	3 cut(s)	78, 187, 318
XceI	RCATGY	2 cut(s)	116, 686
Zsp2I	ATGCAT	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.