FvH4_4g33741

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0019230
Physical Location & Seq
Forward (+)
31851214 .. 31852638
1425 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g33741.t1

Sequence Viewer

Length: 660 bp
ATGAAAACTGCCAATAAGAGAAATACTGAGAATGAGAGAGATCATAGAGTCGAGTGTCTTCATGCATCCAAAACTGAAAAGAATCGCATGGTGGTACCACAATGGTTGAAAATTATGTACAACACAGTATTCTTCAAGGCTTGCATTGCACACTCAGACGCGAAAAGGAACAATTTAGATCATTTCTGTATTGATTGTTGTAAACCTATATGTCTGAATTGTCTTGCCCAGCACATGTTTCACAATCTTGTTAAGATTCGGAGATATATTTACAGTGATGTGATTAATCGTCGAGACTTGTGCAAGCTCTTCAACTGCTCTGGCATACAGACTTATCACACAAACAAAGCCAAAGTGGTATTCCTGAAGCAAAGGCATCGATCACAACAGCAACAACAACAGCAAAACAATAATAAATCGAGGGAGTATATGTGTACCATCTGCCACAAGAATTTGCAAGACAATTCCCTCTATTGCAGCATTGCCTGCAAGGTTTTAGCAATTCATGGGAACGAATGCCAGAGAAAAACTATATGTGGTGGTCATGAATTTGAAGATAGTAATGGGAATAAGGGAGGAAAAAGAAATCTAGAAGTATCATTTGCCAAAAGGCCACAGTTTAGGAGAAAAGGGATCCCTAAAAGATCTCCAATGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

220

Amino Acids

25.75

Weight (kDa)

9.7

Isoelectric Point (pI)

65.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 87 - 165 3.9e-24 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g33741
rosa_chinensis RchiOBHm_Chr4g0443271
rosa_roxburghii Rroxscaffold_5G00383860
rosa_rugosa Rorug04G0345200.1
rosa_samantha Rh4AG400100 Rh4CG427100 Rh4DG407000
rosa_wichuraiana Rw4G034510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 94
AccB1I GGYRCC 1 cut(s) 94
AccII CGCG 1 cut(s) 161
AclWI GGATC 2 cut(s) 628, 641
AcsI RAATTY 2 cut(s) 451, 548
AcuI CTGAAG 1 cut(s) 386
AfaI GTAC 3 cut(s) 96, 119, 436
AflIII ACRYGT 1 cut(s) 234
AgsI TTSAA 4 cut(s) 109, 136, 313, 554
AjuI GAANNNNNNNTTGG 2 cut(s) 344, 376
AluBI AGCT 1 cut(s) 307
AluI AGCT 1 cut(s) 307
Alw26I GTCTC 1 cut(s) 288
AlwI GGATC 2 cut(s) 628, 641
AoxI GGCC 1 cut(s) 611
ApeKI GCWGC 1 cut(s) 477
ApoI RAATTY 2 cut(s) 451, 548
AseI ATTAAT 1 cut(s) 285
Asp718I GGTACC 1 cut(s) 94
BamHI GGATCC 1 cut(s) 633
BanI GGYRCC 1 cut(s) 94
BbsI GAAGAC 1 cut(s) 50
BbvI GCAGC 1 cut(s) 489
BccI CCATC 1 cut(s) 446
BcgI CGANNNNNNTGC 4 cut(s) 282, 316, 359, 393
BcoDI GTCTC 1 cut(s) 288
BfaI CTAG 1 cut(s) 590
BglII AGATCT 1 cut(s) 644
BisI GCNGC 1 cut(s) 478
BlsI GCNGC 1 cut(s) 479
BmiI GGNNCC 2 cut(s) 96, 635
BmsI GCATC 2 cut(s) 74, 385
BpiI GAAGAC 1 cut(s) 50
Bsa29I ATCGAT 1 cut(s) 379
BsaXI ACNNNNNCTCC 2 cut(s) 416, 446
Bse3DI GCAATG 2 cut(s) 144, 480
BseCI ATCGAT 1 cut(s) 379
BseGI GGATG 1 cut(s) 65
BseMI GCAATG 2 cut(s) 144, 480
BseMII CTCAG 2 cut(s) 18, 168
BseXI GCAGC 1 cut(s) 489
BseYI CCCAGC 1 cut(s) 228
Bsh1236I CGCG 1 cut(s) 161
BshFI GGCC 1 cut(s) 613
BshNI GGYRCC 1 cut(s) 94
BshVI ATCGAT 1 cut(s) 379
BsmAI GTCTC 1 cut(s) 288
BsmI GAATGC 1 cut(s) 521
BsnI GGCC 1 cut(s) 613
Bsp1407I TGTACA 1 cut(s) 117
Bsp143I GATC 5 cut(s) 40, 178, 380, 633, 644
BspANI GGCC 1 cut(s) 613
BspCNI CTCAG 2 cut(s) 19, 167
BspDI ATCGAT 1 cut(s) 379
BspFNI CGCG 1 cut(s) 161
BspHI TCATGA 1 cut(s) 544
BspLI GGNNCC 2 cut(s) 96, 635
BspPI GGATC 2 cut(s) 628, 641
BspQI GCTCTTC 1 cut(s) 314
BspT107I GGYRCC 1 cut(s) 94
BsrDI GCAATG 2 cut(s) 144, 480
BsrGI TGTACA 1 cut(s) 117
BssMI GATC 5 cut(s) 40, 178, 380, 633, 644
Bst4CI ACNGT 3 cut(s) 127, 275, 618
Bst6I CTCTTC 1 cut(s) 314
BstAPI GCANNNNNTGC 1 cut(s) 486
BstAUI TGTACA 1 cut(s) 117
BstC8I GCNNGC 3 cut(s) 142, 305, 487
BstDEI CTNAG 2 cut(s) 27, 154
BstF5I GGATG 1 cut(s) 65
BstFNI CGCG 1 cut(s) 161
BstKTI GATC 5 cut(s) 43, 181, 383, 636, 647
BstMAI GTCTC 1 cut(s) 288
BstMBI GATC 5 cut(s) 40, 178, 380, 633, 644
BstMWI GCNNNNNNNGC 2 cut(s) 146, 486
BstNSI RCATGY 1 cut(s) 238
BstUI CGCG 1 cut(s) 161
BstV1I GCAGC 1 cut(s) 489
BstV2I GAAGAC 1 cut(s) 50
BstX2I RGATCY 2 cut(s) 633, 644
BstYI RGATCY 2 cut(s) 633, 644
Bsu15I ATCGAT 1 cut(s) 379
BsuRI GGCC 1 cut(s) 613
BsuTUI ATCGAT 1 cut(s) 379
BtsCI GGATG 1 cut(s) 65
BtsIMutI CAGTG 1 cut(s) 280
Cac8I GCNNGC 3 cut(s) 142, 305, 487
CciI TCATGA 1 cut(s) 544
ClaI ATCGAT 1 cut(s) 379
CseI GACGC 1 cut(s) 167
Csp6I GTAC 3 cut(s) 95, 118, 435
CspCI CAANNNNNGTGG 2 cut(s) 87, 122
CviAII CATG 5 cut(s) 62, 88, 235, 506, 545
CviJI RGCY 4 cut(s) 140, 307, 350, 613
CviKI_1 RGCY 4 cut(s) 140, 307, 350, 613
CviQI GTAC 3 cut(s) 95, 118, 435
DdeI CTNAG 2 cut(s) 27, 154
DpnI GATC 5 cut(s) 42, 180, 382, 635, 646
DpnII GATC 5 cut(s) 40, 178, 380, 633, 644
Eam1104I CTCTTC 1 cut(s) 314
EarI CTCTTC 1 cut(s) 314
Eco57I CTGAAG 1 cut(s) 386
EcoT22I ATGCAT 1 cut(s) 67
FaeI CATG 5 cut(s) 65, 91, 238, 509, 548
FatI CATG 5 cut(s) 61, 87, 234, 505, 544
Fnu4HI GCNGC 1 cut(s) 478
FokI GGATG 1 cut(s) 52
Fsp4HI GCNGC 1 cut(s) 478
FspBI CTAG 1 cut(s) 590
GluI GCNGC 1 cut(s) 478
GsaI CCCAGC 1 cut(s) 232
HaeIII GGCC 1 cut(s) 613
HgaI GACGC 1 cut(s) 167
Hin1II CATG 5 cut(s) 65, 91, 238, 509, 548
HinfI GANTC 3 cut(s) 48, 82, 256
Hpy166II GTNNAC 2 cut(s) 203, 435
Hpy188I TCNGA 4 cut(s) 157, 216, 261, 659
Hpy188III TCNNGA 4 cut(s) 293, 364, 545, 590
Hpy8I GTNNAC 2 cut(s) 203, 435
Hpy99I CGWCG 1 cut(s) 294
HpyCH4III ACNGT 3 cut(s) 127, 275, 618
HpyCH4V TGCA 7 cut(s) 65, 144, 149, 303, 457, 477, 489
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 486
HpyF3I CTNAG 2 cut(s) 27, 154
Hsp92II CATG 5 cut(s) 65, 91, 238, 509, 548
KpnI GGTACC 1 cut(s) 98
Kzo9I GATC 5 cut(s) 40, 178, 380, 633, 644
LguI GCTCTTC 1 cut(s) 314
LpnPI CCDG 5 cut(s) 242, 306, 377, 499, 533
Lsp1109I GCAGC 1 cut(s) 489
LweI GCATC 2 cut(s) 74, 385
MaeI CTAG 1 cut(s) 590
MalI GATC 5 cut(s) 42, 180, 382, 635, 646
MboI GATC 5 cut(s) 40, 178, 380, 633, 644
MboII GAAGA 4 cut(s) 50, 124, 301, 566
MflI RGATCY 2 cut(s) 633, 644
MluCI AATT 7 cut(s) 111, 172, 217, 451, 463, 501, 548
MlyI GAGTC 1 cut(s) 57
MnlI CCTC 3 cut(s) 414, 479, 569
Mph1103I ATGCAT 1 cut(s) 67
MseI TTAA 2 cut(s) 252, 285
Mva1269I GAATGC 1 cut(s) 521
MvnI CGCG 1 cut(s) 161
MwoI GCNNNNNNNGC 2 cut(s) 146, 486
NdeII GATC 5 cut(s) 40, 178, 380, 633, 644
NlaIII CATG 5 cut(s) 65, 91, 238, 509, 548
NlaIV GGNNCC 2 cut(s) 96, 635
NsiI ATGCAT 1 cut(s) 67
NspI RCATGY 1 cut(s) 238
PagI TCATGA 1 cut(s) 544
PciI ACATGT 1 cut(s) 234
PciSI GCTCTTC 1 cut(s) 314
PctI GAATGC 1 cut(s) 521
PfeI GAWTC 2 cut(s) 82, 256
PkrI GCNGC 1 cut(s) 479
PleI GAGTC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 56
PscI ACATGT 1 cut(s) 234
PshBI ATTAAT 1 cut(s) 285
PspFI CCCAGC 1 cut(s) 228
PspN4I GGNNCC 2 cut(s) 96, 635
PsuI RGATCY 2 cut(s) 633, 644
RsaI GTAC 3 cut(s) 96, 119, 436
RsaNI GTAC 3 cut(s) 95, 118, 435
SapI GCTCTTC 1 cut(s) 314
SaqAI TTAA 2 cut(s) 252, 285
SatI GCNGC 1 cut(s) 478
Sau3AI GATC 5 cut(s) 40, 178, 380, 633, 644
SchI GAGTC 1 cut(s) 57
SetI ASST 3 cut(s) 208, 309, 495
SfaNI GCATC 2 cut(s) 74, 385
Sse9I AATT 7 cut(s) 111, 172, 217, 451, 463, 501, 548
SspMI CTAG 1 cut(s) 590
TaaI ACNGT 3 cut(s) 127, 275, 618
TaqI TCGA 4 cut(s) 51, 292, 379, 419
TasI AATT 7 cut(s) 111, 172, 217, 451, 463, 501, 548
TatI WGTACW 1 cut(s) 117
TfiI GAWTC 2 cut(s) 82, 256
Tru1I TTAA 2 cut(s) 252, 285
Tru9I TTAA 2 cut(s) 252, 285
TscAI CASTG 1 cut(s) 280
TseI GCWGC 1 cut(s) 477
TspDTI ATGAA 4 cut(s) 17, 50, 494, 561
TspRI CASTG 1 cut(s) 280
VspI ATTAAT 1 cut(s) 285
XapI RAATTY 2 cut(s) 451, 548
XbaI TCTAGA 1 cut(s) 589
XceI RCATGY 1 cut(s) 238
XspI CTAG 1 cut(s) 590
Zsp2I ATGCAT 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.