Rroxscaffold_5G00383860

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0019230
Physical Location & Seq
Forward (+)
63404949 .. 63407760
2812 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00383860.1

Sequence Viewer

Length: 594 bp
ATGAAAGCCTCTAATAAGAGAGACACTGAGAATGAGAGACACCATGGAGTCGAACGTCTTCAGGCATCCAAAACTGAAATGAATGACATGGTGGTACCACAATGGTTGAAAATTATGTACAGCACAGTGTTCTTCGAGACTTGCATTGCACACTCGGATGCCAAAAGGAATGATATAGATCATTTCTGCATTGATTGTCTTCAACCTATATGTCTGACCTGTCTTGCCCAGCATATGTTTCACAAGCACATTAAGATTCGGAGATATATTTACCGTGATGTGATTAATCGTCGAGACTTATGCAAGCTCTTCAACTGTTCTGGCATACAGACATATCATACAAACAAAGCCAAAGTGGTATTCTTGAAGCAAAGGCATCAATCACAACAGCAAGAGCAACAGCGACAACATAATAATAAATCGAGGGAGTATATGTGTACCACCTGCCACAAGAATTTGCAAGACAATTCCCTCTATTGCAGTGTTGCCTGCAAGGTTTCAGCAATACTTGGAAACGAATGCCAGAGAAAAACTATATGTGGTGGTCATAGTTTTGAAGATAATAATGAGAAAAAGGGAGGAAAAAAAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

197

Amino Acids

23.15

Weight (kDa)

9.17

Isoelectric Point (pI)

61.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 87 - 166 2.5e-24 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g33741
rosa_chinensis RchiOBHm_Chr4g0443271
rosa_roxburghii Rroxscaffold_5G00383860
rosa_rugosa Rorug04G0345200.1
rosa_samantha Rh4AG400100 Rh4CG427100 Rh4DG407000
rosa_wichuraiana Rw4G034510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 452
Acc36I ACCTGC 1 cut(s) 452
Acc65I GGTACC 1 cut(s) 94
AccB1I GGYRCC 1 cut(s) 94
AcsI RAATTY 1 cut(s) 454
AcuI CTGAAG 1 cut(s) 44
AfaI GTAC 3 cut(s) 96, 119, 439
AgsI TTSAA 5 cut(s) 109, 203, 313, 367, 557
AjuI GAANNNNNNNTTGG 2 cut(s) 344, 376
AluBI AGCT 1 cut(s) 307
AluI AGCT 1 cut(s) 307
Alw26I GTCTC 4 cut(s) 15, 31, 131, 288
ApoI RAATTY 1 cut(s) 454
AseI ATTAAT 1 cut(s) 285
Asp700I GAANNNNTTC 1 cut(s) 57
Asp718I GGTACC 1 cut(s) 94
BanI GGYRCC 1 cut(s) 94
BbsI GAAGAC 2 cut(s) 50, 191
BcgI CGANNNNNNTGC 2 cut(s) 282, 316
BcoDI GTCTC 4 cut(s) 15, 31, 131, 288
BfaI CTAG 1 cut(s) 592
BfuAI ACCTGC 1 cut(s) 452
BmiI GGNNCC 1 cut(s) 96
BmsI GCATC 3 cut(s) 74, 148, 385
BpiI GAAGAC 2 cut(s) 50, 191
BsaBI GATNNNNATC 1 cut(s) 177
BsaJI CCNNGG 1 cut(s) 43
BsaXI ACNNNNNCTCC 2 cut(s) 419, 449
Bse3DI GCAATG 1 cut(s) 144
Bse8I GATNNNNATC 1 cut(s) 177
BseDI CCNNGG 1 cut(s) 43
BseGI GGATG 2 cut(s) 65, 163
BseJI GATNNNNATC 1 cut(s) 177
BseMI GCAATG 1 cut(s) 144
BseMII CTCAG 1 cut(s) 18
BseYI CCCAGC 1 cut(s) 228
BshNI GGYRCC 1 cut(s) 94
BsmAI GTCTC 4 cut(s) 15, 31, 131, 288
BsmI GAATGC 1 cut(s) 524
Bsp1407I TGTACA 1 cut(s) 117
Bsp143I GATC 1 cut(s) 178
Bsp19I CCATGG 1 cut(s) 43
BspCNI CTCAG 1 cut(s) 19
BspLI GGNNCC 1 cut(s) 96
BspMI ACCTGC 1 cut(s) 452
BspQI GCTCTTC 1 cut(s) 314
BspT107I GGYRCC 1 cut(s) 94
BsrDI GCAATG 1 cut(s) 144
BsrGI TGTACA 1 cut(s) 117
BssECI CCNNGG 1 cut(s) 43
BssMI GATC 1 cut(s) 178
BssT1I CCWWGG 1 cut(s) 43
Bst4CI ACNGT 3 cut(s) 127, 275, 317
Bst6I CTCTTC 1 cut(s) 314
BstAUI TGTACA 1 cut(s) 117
BstC8I GCNNGC 2 cut(s) 305, 490
BstDEI CTNAG 1 cut(s) 27
BstDSI CCRYGG 1 cut(s) 43
BstF5I GGATG 2 cut(s) 65, 163
BstKTI GATC 1 cut(s) 181
BstMAI GTCTC 4 cut(s) 15, 31, 131, 288
BstMBI GATC 1 cut(s) 178
BstV2I GAAGAC 2 cut(s) 50, 191
BtgI CCRYGG 1 cut(s) 43
BtsCI GGATG 2 cut(s) 65, 163
BtsI GCAGTG 1 cut(s) 487
BtsIMutI CAGTG 3 cut(s) 24, 132, 487
BveI ACCTGC 1 cut(s) 452
Cac8I GCNNGC 2 cut(s) 305, 490
Csp6I GTAC 3 cut(s) 95, 118, 438
CspCI CAANNNNNGTGG 2 cut(s) 87, 122
CviAII CATG 2 cut(s) 44, 88
CviJI RGCY 3 cut(s) 8, 307, 350
CviKI_1 RGCY 3 cut(s) 8, 307, 350
CviQI GTAC 3 cut(s) 95, 118, 438
DdeI CTNAG 1 cut(s) 27
DpnI GATC 1 cut(s) 180
DpnII GATC 1 cut(s) 178
Eam1104I CTCTTC 1 cut(s) 314
EarI CTCTTC 1 cut(s) 314
Eco130I CCWWGG 1 cut(s) 43
Eco57I CTGAAG 1 cut(s) 44
EcoT14I CCWWGG 1 cut(s) 43
ErhI CCWWGG 1 cut(s) 43
FaeI CATG 2 cut(s) 47, 91
FatI CATG 2 cut(s) 43, 87
FauNDI CATATG 1 cut(s) 234
FokI GGATG 2 cut(s) 52, 170
FspBI CTAG 1 cut(s) 592
GsaI CCCAGC 1 cut(s) 232
Hin1II CATG 2 cut(s) 47, 91
HinfI GANTC 2 cut(s) 48, 256
Hpy166II GTNNAC 1 cut(s) 438
Hpy188I TCNGA 3 cut(s) 157, 216, 261
Hpy188III TCNNGA 3 cut(s) 136, 293, 364
Hpy8I GTNNAC 1 cut(s) 438
Hpy99I CGWCG 1 cut(s) 294
HpyCH4III ACNGT 3 cut(s) 127, 275, 317
HpyCH4IV ACGT 1 cut(s) 55
HpyCH4V TGCA 7 cut(s) 144, 149, 189, 303, 460, 480, 492
HpyF3I CTNAG 1 cut(s) 27
HpySE526I ACGT 1 cut(s) 55
Hsp92II CATG 2 cut(s) 47, 91
KpnI GGTACC 1 cut(s) 98
Kzo9I GATC 1 cut(s) 178
LguI GCTCTTC 1 cut(s) 314
LpnPI CCDG 7 cut(s) 47, 232, 242, 306, 457, 502, 536
LweI GCATC 3 cut(s) 74, 148, 385
MaeI CTAG 1 cut(s) 592
MaeII ACGT 1 cut(s) 55
MalI GATC 1 cut(s) 180
MboI GATC 1 cut(s) 178
MboII GAAGA 5 cut(s) 50, 124, 191, 301, 569
MluCI AATT 3 cut(s) 111, 454, 466
MlyI GAGTC 1 cut(s) 57
MnlI CCTC 4 cut(s) 19, 417, 482, 572
MroXI GAANNNNTTC 1 cut(s) 57
MseI TTAA 2 cut(s) 252, 285
MslI CAYNNNNRTG 1 cut(s) 156
Mva1269I GAATGC 1 cut(s) 524
NcoI CCATGG 1 cut(s) 43
NdeI CATATG 1 cut(s) 234
NdeII GATC 1 cut(s) 178
NlaIII CATG 2 cut(s) 47, 91
NlaIV GGNNCC 1 cut(s) 96
PaqCI CACCTGC 1 cut(s) 452
PciSI GCTCTTC 1 cut(s) 314
PctI GAATGC 1 cut(s) 524
PdmI GAANNNNTTC 1 cut(s) 57
PfeI GAWTC 1 cut(s) 256
PleI GAGTC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 56
PshBI ATTAAT 1 cut(s) 285
PspFI CCCAGC 1 cut(s) 228
PspN4I GGNNCC 1 cut(s) 96
RsaI GTAC 3 cut(s) 96, 119, 439
RsaNI GTAC 3 cut(s) 95, 118, 438
RseI CAYNNNNRTG 1 cut(s) 156
SapI GCTCTTC 1 cut(s) 314
SaqAI TTAA 2 cut(s) 252, 285
Sau3AI GATC 1 cut(s) 178
SchI GAGTC 1 cut(s) 57
SetI ASST 6 cut(s) 58, 208, 221, 309, 446, 498
SfaNI GCATC 3 cut(s) 74, 148, 385
SmiMI CAYNNNNRTG 1 cut(s) 156
Sse9I AATT 3 cut(s) 111, 454, 466
SspMI CTAG 1 cut(s) 592
StyI CCWWGG 1 cut(s) 43
TaaI ACNGT 3 cut(s) 127, 275, 317
TaiI ACGT 1 cut(s) 58
TaqI TCGA 4 cut(s) 51, 135, 292, 422
TasI AATT 3 cut(s) 111, 454, 466
TatI WGTACW 1 cut(s) 117
TfiI GAWTC 1 cut(s) 256
Tru1I TTAA 2 cut(s) 252, 285
Tru9I TTAA 2 cut(s) 252, 285
TscAI CASTG 3 cut(s) 31, 132, 487
TspDTI ATGAA 2 cut(s) 17, 95
TspRI CASTG 3 cut(s) 31, 132, 487
VspI ATTAAT 1 cut(s) 285
XapI RAATTY 1 cut(s) 454
XmnI GAANNNNTTC 1 cut(s) 57
XspI CTAG 1 cut(s) 592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.