Rw4G034510

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0019230
Physical Location & Seq
Forward (+)
61549083 .. 61550162
1080 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G034510.1

Sequence Viewer

Length: 576 bp
ATGGTGGTACCACAATGGTTGAAAATTATGTACAGCACAGTATTCTTCGAGACTTGCATTGCACACTCGGATGCAAAAAAGAACGATATAGATCATTTCTGCATTGATTGTCTTCAACCTATATGTCTGAACTGTCTTGCCCAGCATATGTTTCACATGCACATTAAGATTCGGAGATATATTTACAGTGATGTGATTAATCGTCGAGACTTATGCAAGCTCTTCAACTGTTCTGGCATACAGACATATCATACAAACAAAGCCAAAGTGGTATTCTTGAAGCAAAGGCATCAACCACAACAGCAAAAGCAACAGCGACAACATTATAATAAATCGAGGGAGTATATGTGTACCACCTGCCACAAGAATTTGCAAGACAATTCCCTTTATTGCAGTGTTGCCTGCAAGGTTTCAGCAATACTTGGAAACGAATGCCAGAGAAAAACTATACGTGGTGGTCACAGTTTTGAAGATAATAATGAGAAAAAGGGAGGAAAAAAAAATCTAGAAGTACCATTTTCCAAAAGGCCAAAGTTAAGGAGAAAAGGAGTCCCTCTAAGATCCCCAATGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

191

Amino Acids

22.51

Weight (kDa)

9.64

Isoelectric Point (pI)

69.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 58 - 137 1.8e-24 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g33741
rosa_chinensis RchiOBHm_Chr4g0443271
rosa_roxburghii Rroxscaffold_5G00383860
rosa_rugosa Rorug04G0345200.1
rosa_samantha Rh4AG400100 Rh4CG427100 Rh4DG407000
rosa_wichuraiana Rw4G034510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 327
AarI CACCTGC 1 cut(s) 365
Acc36I ACCTGC 1 cut(s) 365
Acc65I GGTACC 1 cut(s) 7
AccB1I GGYRCC 1 cut(s) 7
AclWI GGATC 1 cut(s) 555
AcsI RAATTY 1 cut(s) 367
AfaI GTAC 4 cut(s) 9, 32, 352, 513
AgsI TTSAA 5 cut(s) 22, 116, 226, 280, 470
AjuI GAANNNNNNNTTGG 2 cut(s) 257, 289
AluBI AGCT 1 cut(s) 220
AluI AGCT 1 cut(s) 220
Alw26I GTCTC 2 cut(s) 44, 201
AlwI GGATC 1 cut(s) 555
AoxI GGCC 1 cut(s) 527
ApoI RAATTY 1 cut(s) 367
AseI ATTAAT 1 cut(s) 198
Asp718I GGTACC 1 cut(s) 7
BanI GGYRCC 1 cut(s) 7
BbsI GAAGAC 1 cut(s) 104
BcgI CGANNNNNNTGC 2 cut(s) 195, 229
BcoDI GTCTC 2 cut(s) 44, 201
BfaI CTAG 1 cut(s) 506
BfuAI ACCTGC 1 cut(s) 365
BmiI GGNNCC 1 cut(s) 9
BmsI GCATC 2 cut(s) 61, 298
BpiI GAAGAC 1 cut(s) 104
BsaAI YACGTR 1 cut(s) 452
BsaBI GATNNNNATC 1 cut(s) 90
BsaXI ACNNNNNCTCC 2 cut(s) 332, 362
Bse3DI GCAATG 1 cut(s) 57
Bse8I GATNNNNATC 1 cut(s) 90
BseGI GGATG 1 cut(s) 76
BseJI GATNNNNATC 1 cut(s) 90
BseMI GCAATG 1 cut(s) 57
BseYI CCCAGC 1 cut(s) 141
BshFI GGCC 1 cut(s) 529
BshNI GGYRCC 1 cut(s) 7
BslFI GGGAC 1 cut(s) 536
BsmAI GTCTC 2 cut(s) 44, 201
BsmFI GGGAC 1 cut(s) 536
BsmI GAATGC 1 cut(s) 437
BsnI GGCC 1 cut(s) 529
Bsp1407I TGTACA 1 cut(s) 30
Bsp143I GATC 2 cut(s) 91, 560
BspANI GGCC 1 cut(s) 529
BspLI GGNNCC 1 cut(s) 9
BspMI ACCTGC 1 cut(s) 365
BspPI GGATC 1 cut(s) 555
BspQI GCTCTTC 1 cut(s) 227
BspT107I GGYRCC 1 cut(s) 7
BsrDI GCAATG 1 cut(s) 57
BsrGI TGTACA 1 cut(s) 30
BssMI GATC 2 cut(s) 91, 560
Bst4CI ACNGT 5 cut(s) 40, 134, 188, 230, 464
Bst6I CTCTTC 1 cut(s) 227
BstAUI TGTACA 1 cut(s) 30
BstBAI YACGTR 1 cut(s) 452
BstC8I GCNNGC 2 cut(s) 218, 403
BstDEI CTNAG 1 cut(s) 557
BstF5I GGATG 1 cut(s) 76
BstKTI GATC 2 cut(s) 94, 563
BstMAI GTCTC 2 cut(s) 44, 201
BstMBI GATC 2 cut(s) 91, 560
BstNSI RCATGY 1 cut(s) 160
BstV2I GAAGAC 1 cut(s) 104
BstX2I RGATCY 1 cut(s) 560
BstYI RGATCY 1 cut(s) 560
BsuRI GGCC 1 cut(s) 529
BtsCI GGATG 1 cut(s) 76
BtsI GCAGTG 1 cut(s) 400
BtsIMutI CAGTG 2 cut(s) 193, 400
BveI ACCTGC 1 cut(s) 365
Cac8I GCNNGC 2 cut(s) 218, 403
Csp6I GTAC 4 cut(s) 8, 31, 351, 512
CspCI CAANNNNNGTGG 1 cut(s) 35
CviAII CATG 1 cut(s) 157
CviJI RGCY 3 cut(s) 220, 263, 529
CviKI_1 RGCY 3 cut(s) 220, 263, 529
CviQI GTAC 4 cut(s) 8, 31, 351, 512
DdeI CTNAG 1 cut(s) 557
DpnI GATC 2 cut(s) 93, 562
DpnII GATC 2 cut(s) 91, 560
Eam1104I CTCTTC 1 cut(s) 227
EarI CTCTTC 1 cut(s) 227
FaeI CATG 1 cut(s) 160
FaqI GGGAC 1 cut(s) 536
FatI CATG 1 cut(s) 156
FauNDI CATATG 1 cut(s) 147
FokI GGATG 1 cut(s) 83
FspBI CTAG 1 cut(s) 506
GsaI CCCAGC 1 cut(s) 145
HaeIII GGCC 1 cut(s) 529
Hin1II CATG 1 cut(s) 160
HinfI GANTC 2 cut(s) 169, 549
Hpy166II GTNNAC 1 cut(s) 351
Hpy188I TCNGA 4 cut(s) 70, 129, 174, 575
Hpy188III TCNNGA 4 cut(s) 49, 206, 277, 506
Hpy8I GTNNAC 1 cut(s) 351
Hpy99I CGWCG 1 cut(s) 207
HpyCH4III ACNGT 5 cut(s) 40, 134, 188, 230, 464
HpyCH4IV ACGT 1 cut(s) 451
HpyCH4V TGCA 9 cut(s) 57, 62, 74, 102, 160, 216, 373, 393, 405
HpyF3I CTNAG 1 cut(s) 557
HpySE526I ACGT 1 cut(s) 451
Hsp92II CATG 1 cut(s) 160
KpnI GGTACC 1 cut(s) 11
Kzo9I GATC 2 cut(s) 91, 560
LguI GCTCTTC 1 cut(s) 227
LpnPI CCDG 5 cut(s) 155, 219, 370, 415, 449
LweI GCATC 2 cut(s) 61, 298
MaeI CTAG 1 cut(s) 506
MaeII ACGT 1 cut(s) 451
MaeIII GTNAC 1 cut(s) 458
MalI GATC 2 cut(s) 93, 562
MboI GATC 2 cut(s) 91, 560
MboII GAAGA 4 cut(s) 37, 104, 214, 482
MflI RGATCY 1 cut(s) 560
MluCI AATT 3 cut(s) 24, 367, 379
MlyI GAGTC 1 cut(s) 558
MnlI CCTC 3 cut(s) 330, 485, 564
MseI TTAA 3 cut(s) 165, 198, 536
MslI CAYNNNNRTG 1 cut(s) 69
Mva1269I GAATGC 1 cut(s) 437
NdeI CATATG 1 cut(s) 147
NdeII GATC 2 cut(s) 91, 560
NlaIII CATG 1 cut(s) 160
NlaIV GGNNCC 1 cut(s) 9
NmuCI GTSAC 1 cut(s) 458
NspI RCATGY 1 cut(s) 160
PaqCI CACCTGC 1 cut(s) 365
PciSI GCTCTTC 1 cut(s) 227
PctI GAATGC 1 cut(s) 437
PfeI GAWTC 1 cut(s) 169
PleI GAGTC 1 cut(s) 557
PpsI GAGTC 1 cut(s) 557
Ppu21I YACGTR 1 cut(s) 452
PshBI ATTAAT 1 cut(s) 198
PsiI TTATAA 1 cut(s) 327
PspFI CCCAGC 1 cut(s) 141
PspN4I GGNNCC 1 cut(s) 9
PsuI RGATCY 1 cut(s) 560
RsaI GTAC 4 cut(s) 9, 32, 352, 513
RsaNI GTAC 4 cut(s) 8, 31, 351, 512
RseI CAYNNNNRTG 1 cut(s) 69
SapI GCTCTTC 1 cut(s) 227
SaqAI TTAA 3 cut(s) 165, 198, 536
Sau3AI GATC 2 cut(s) 91, 560
SchI GAGTC 1 cut(s) 558
SetI ASST 5 cut(s) 121, 222, 359, 411, 454
SfaNI GCATC 2 cut(s) 61, 298
SmiMI CAYNNNNRTG 1 cut(s) 69
Sse9I AATT 3 cut(s) 24, 367, 379
SspMI CTAG 1 cut(s) 506
TaaI ACNGT 5 cut(s) 40, 134, 188, 230, 464
TaiI ACGT 1 cut(s) 454
TaqI TCGA 3 cut(s) 48, 205, 335
TasI AATT 3 cut(s) 24, 367, 379
TatI WGTACW 1 cut(s) 30
TfiI GAWTC 1 cut(s) 169
Tru1I TTAA 3 cut(s) 165, 198, 536
Tru9I TTAA 3 cut(s) 165, 198, 536
TscAI CASTG 2 cut(s) 193, 400
TseFI GTSAC 1 cut(s) 458
Tsp45I GTSAC 1 cut(s) 458
TspRI CASTG 2 cut(s) 193, 400
VspI ATTAAT 1 cut(s) 198
XapI RAATTY 1 cut(s) 367
XbaI TCTAGA 1 cut(s) 505
XceI RCATGY 1 cut(s) 160
XspI CTAG 1 cut(s) 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.