Rh4AG400100

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0019230
Physical Location & Seq
Forward (+)
70345421 .. 70349532
4112 bp
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UTR
Exon/CDS
Intron
Rh4AG400100.1

Sequence Viewer

Length: 456 bp
ATGTGTTGCATATTTTTTTTCCTTCATCAAAACATGAAGATTCCGTTAAATCAGTATGTAAAGGTTTTTTTTTTTTTTTTTTTGGTCAATGATTTATGTAAAGGTAGACTTCGTTGTTTACAGACATATCAGACAAACAAAGCCAAAGTGGTATTCTTGAAGCAAAGGCATCAACCACAACAGCAAGAGCAACAGCGACAACATTATAATAAATCGGGGGAGTATATGTGTACCACCTGCCACAAGAATTTGCAAGACAATTCCCTCTATTGCAGTGTTGCCTGCAAGGTTTCAGCAATACTTGGAAACGAATGCCAGAGAAAAACTATATGTGGTGGTCATAGTTTTGAAGATAATAATGAGAAAAAGGGAGGAAAAAAAAATCTAGAAGTACCATTTTCCAAAAGGCCAAAGTTAAGGAGAAAAGGAGTCCCTCTAAGATCCCCAATGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

151

Amino Acids

17.78

Weight (kDa)

9.72

Isoelectric Point (pI)

65.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 38 - 97 1e-14 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g33741
rosa_chinensis RchiOBHm_Chr4g0443271
rosa_roxburghii Rroxscaffold_5G00383860
rosa_rugosa Rorug04G0345200.1
rosa_samantha Rh4AG400100 Rh4CG427100 Rh4DG407000
rosa_wichuraiana Rw4G034510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 207
AarI CACCTGC 1 cut(s) 245
Acc36I ACCTGC 1 cut(s) 245
AccI GTMKAC 1 cut(s) 106
AclWI GGATC 1 cut(s) 435
AcsI RAATTY 1 cut(s) 247
AfaI GTAC 2 cut(s) 232, 393
AgsI TTSAA 2 cut(s) 160, 350
AjuI GAANNNNNNNTTGG 2 cut(s) 137, 169
AlwI GGATC 1 cut(s) 435
AoxI GGCC 1 cut(s) 407
ApoI RAATTY 1 cut(s) 247
BfaI CTAG 1 cut(s) 386
BfuAI ACCTGC 1 cut(s) 245
BmsI GCATC 1 cut(s) 178
BsaXI ACNNNNNCTCC 2 cut(s) 212, 242
BshFI GGCC 1 cut(s) 409
BslFI GGGAC 1 cut(s) 416
BsmFI GGGAC 1 cut(s) 416
BsmI GAATGC 1 cut(s) 317
BsnI GGCC 1 cut(s) 409
Bsp143I GATC 1 cut(s) 440
BspANI GGCC 1 cut(s) 409
BspMI ACCTGC 1 cut(s) 245
BspPI GGATC 1 cut(s) 435
BssMI GATC 1 cut(s) 440
BstC8I GCNNGC 1 cut(s) 283
BstDEI CTNAG 1 cut(s) 437
BstKTI GATC 1 cut(s) 443
BstMBI GATC 1 cut(s) 440
BstX2I RGATCY 1 cut(s) 440
BstYI RGATCY 1 cut(s) 440
BsuRI GGCC 1 cut(s) 409
BtsI GCAGTG 1 cut(s) 280
BtsIMutI CAGTG 1 cut(s) 280
BveI ACCTGC 1 cut(s) 245
Cac8I GCNNGC 1 cut(s) 283
Csp6I GTAC 2 cut(s) 231, 392
CviAII CATG 1 cut(s) 34
CviJI RGCY 2 cut(s) 143, 409
CviKI_1 RGCY 2 cut(s) 143, 409
CviQI GTAC 2 cut(s) 231, 392
DdeI CTNAG 1 cut(s) 437
DpnI GATC 1 cut(s) 442
DpnII GATC 1 cut(s) 440
FaeI CATG 1 cut(s) 37
FalI AAGNNNNNCTT 2 cut(s) 93, 125
FaqI GGGAC 1 cut(s) 416
FatI CATG 1 cut(s) 33
FblI GTMKAC 1 cut(s) 106
FspBI CTAG 1 cut(s) 386
HaeIII GGCC 1 cut(s) 409
Hin1II CATG 1 cut(s) 37
HinfI GANTC 2 cut(s) 40, 429
Hpy166II GTNNAC 3 cut(s) 107, 119, 231
Hpy188I TCNGA 2 cut(s) 132, 455
Hpy188III TCNNGA 2 cut(s) 157, 386
Hpy8I GTNNAC 3 cut(s) 107, 119, 231
HpyAV CCTTC 1 cut(s) 32
HpyCH4V TGCA 4 cut(s) 9, 253, 273, 285
HpyF3I CTNAG 1 cut(s) 437
Hsp92II CATG 1 cut(s) 37
Kzo9I GATC 1 cut(s) 440
LpnPI CCDG 3 cut(s) 250, 295, 329
LweI GCATC 1 cut(s) 178
MaeI CTAG 1 cut(s) 386
MalI GATC 1 cut(s) 442
MboI GATC 1 cut(s) 440
MboII GAAGA 2 cut(s) 49, 362
MflI RGATCY 1 cut(s) 440
MluCI AATT 2 cut(s) 247, 259
MlyI GAGTC 1 cut(s) 438
MnlI CCTC 3 cut(s) 275, 365, 444
MseI TTAA 2 cut(s) 47, 416
Mva1269I GAATGC 1 cut(s) 317
NdeII GATC 1 cut(s) 440
NlaIII CATG 1 cut(s) 37
PaqCI CACCTGC 1 cut(s) 245
PctI GAATGC 1 cut(s) 317
PfeI GAWTC 1 cut(s) 40
PleI GAGTC 1 cut(s) 437
PpsI GAGTC 1 cut(s) 437
PsiI TTATAA 1 cut(s) 207
PsuI RGATCY 1 cut(s) 440
RsaI GTAC 2 cut(s) 232, 393
RsaNI GTAC 2 cut(s) 231, 392
SaqAI TTAA 2 cut(s) 47, 416
Sau3AI GATC 1 cut(s) 440
SchI GAGTC 1 cut(s) 438
SetI ASST 4 cut(s) 66, 106, 239, 291
SfaNI GCATC 1 cut(s) 178
Sse9I AATT 2 cut(s) 247, 259
SspMI CTAG 1 cut(s) 386
TasI AATT 2 cut(s) 247, 259
TfiI GAWTC 1 cut(s) 40
Tru1I TTAA 2 cut(s) 47, 416
Tru9I TTAA 2 cut(s) 47, 416
TscAI CASTG 1 cut(s) 280
TspDTI ATGAA 2 cut(s) 14, 50
TspGWI ACGGA 1 cut(s) 33
TspRI CASTG 1 cut(s) 280
XapI RAATTY 1 cut(s) 247
XbaI TCTAGA 1 cut(s) 385
XmiI GTMKAC 1 cut(s) 106
XspI CTAG 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.