Rh4DG407000

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0019230
Physical Location & Seq
Forward (+)
62024676 .. 62028766
4091 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG407000.1

Sequence Viewer

Length: 597 bp
ATGTTTTTGCAGAAGAATGACATGGTGGTACCACAATGGTTGAAAATTATGTACAGCACAGTATTCTTCGAGACTTGCATTACACACTCGGATGCAAAAAAGAACGATATAGATCATTTCTGCATTGATTGTCTTCAACCTATATGTCTGAACTGTCTTGCCCAGCATATGTTTCACAAGCACATTAAGATTCAGAGATATATTTACAGTGATGTGATTAATTGTCGAGACTTATGCAAGCTCTTCAACTGTTCTGGCATACAGACATATCAGACAAACAAAGCCAAAGTGGTATTCTTGAAGCAAAGGCATCAACCACAACAGCAAGAGCAACAGCGACAACATTATAATAAATCGGGGGAGTATATGTGTACCACCTGCCACAAGAATTTGCAAGACAATTCCCTCTATTGCAGTGTTGCCTGCAAGGTTTCAGCAATACTTGGAAACGAATGCCAGAGAAAAACTATATGTGGTGGTCATAGTTTTGAAGATAATAATGAGAAAAAGGGAGGAAAAAAAAATCTAGAAGTACCATTTTCCAAAAGGCCAAAGTTAAGGAGAAAAGGAGTCCCTCTAAGATCCCCAATGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

198

Amino Acids

23.17

Weight (kDa)

9.24

Isoelectric Point (pI)

61.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 66 - 144 2.3e-23 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019230)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g33741
rosa_chinensis RchiOBHm_Chr4g0443271
rosa_roxburghii Rroxscaffold_5G00383860
rosa_rugosa Rorug04G0345200.1
rosa_samantha Rh4AG400100 Rh4CG427100 Rh4DG407000
rosa_wichuraiana Rw4G034510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 348
AarI CACCTGC 1 cut(s) 386
Acc36I ACCTGC 1 cut(s) 386
Acc65I GGTACC 1 cut(s) 28
AccB1I GGYRCC 1 cut(s) 28
AclWI GGATC 1 cut(s) 576
AcsI RAATTY 1 cut(s) 388
AfaI GTAC 4 cut(s) 30, 53, 373, 534
AgsI TTSAA 5 cut(s) 43, 137, 247, 301, 491
AjuI GAANNNNNNNTTGG 2 cut(s) 278, 310
AluBI AGCT 1 cut(s) 241
AluI AGCT 1 cut(s) 241
Alw26I GTCTC 2 cut(s) 65, 222
AlwI GGATC 1 cut(s) 576
AoxI GGCC 1 cut(s) 548
ApoI RAATTY 1 cut(s) 388
AseI ATTAAT 1 cut(s) 219
Asp718I GGTACC 1 cut(s) 28
BanI GGYRCC 1 cut(s) 28
BbsI GAAGAC 1 cut(s) 125
BcgI CGANNNNNNTGC 2 cut(s) 216, 250
BcoDI GTCTC 2 cut(s) 65, 222
BfaI CTAG 1 cut(s) 527
BfuAI ACCTGC 1 cut(s) 386
BmiI GGNNCC 1 cut(s) 30
BmsI GCATC 2 cut(s) 82, 319
BpiI GAAGAC 1 cut(s) 125
BsaBI GATNNNNATC 1 cut(s) 111
BsaXI ACNNNNNCTCC 2 cut(s) 353, 383
Bse8I GATNNNNATC 1 cut(s) 111
BseGI GGATG 1 cut(s) 97
BseJI GATNNNNATC 1 cut(s) 111
BseYI CCCAGC 1 cut(s) 162
BshFI GGCC 1 cut(s) 550
BshNI GGYRCC 1 cut(s) 28
BslFI GGGAC 1 cut(s) 557
BsmAI GTCTC 2 cut(s) 65, 222
BsmFI GGGAC 1 cut(s) 557
BsmI GAATGC 1 cut(s) 458
BsnI GGCC 1 cut(s) 550
Bsp1407I TGTACA 1 cut(s) 51
Bsp143I GATC 2 cut(s) 112, 581
BspANI GGCC 1 cut(s) 550
BspLI GGNNCC 1 cut(s) 30
BspMI ACCTGC 1 cut(s) 386
BspPI GGATC 1 cut(s) 576
BspQI GCTCTTC 1 cut(s) 248
BspT107I GGYRCC 1 cut(s) 28
BsrGI TGTACA 1 cut(s) 51
BssMI GATC 2 cut(s) 112, 581
Bst4CI ACNGT 4 cut(s) 61, 155, 209, 251
Bst6I CTCTTC 1 cut(s) 248
BstAUI TGTACA 1 cut(s) 51
BstC8I GCNNGC 2 cut(s) 239, 424
BstDEI CTNAG 1 cut(s) 578
BstF5I GGATG 1 cut(s) 97
BstKTI GATC 2 cut(s) 115, 584
BstMAI GTCTC 2 cut(s) 65, 222
BstMBI GATC 2 cut(s) 112, 581
BstV2I GAAGAC 1 cut(s) 125
BstX2I RGATCY 1 cut(s) 581
BstYI RGATCY 1 cut(s) 581
BsuRI GGCC 1 cut(s) 550
BtsCI GGATG 1 cut(s) 97
BtsI GCAGTG 1 cut(s) 421
BtsIMutI CAGTG 2 cut(s) 214, 421
BveI ACCTGC 1 cut(s) 386
Cac8I GCNNGC 2 cut(s) 239, 424
Csp6I GTAC 4 cut(s) 29, 52, 372, 533
CspCI CAANNNNNGTGG 2 cut(s) 21, 56
CviAII CATG 1 cut(s) 22
CviJI RGCY 3 cut(s) 241, 284, 550
CviKI_1 RGCY 3 cut(s) 241, 284, 550
CviQI GTAC 4 cut(s) 29, 52, 372, 533
DdeI CTNAG 1 cut(s) 578
DpnI GATC 2 cut(s) 114, 583
DpnII GATC 2 cut(s) 112, 581
Eam1104I CTCTTC 1 cut(s) 248
EarI CTCTTC 1 cut(s) 248
FaeI CATG 1 cut(s) 25
FaqI GGGAC 1 cut(s) 557
FatI CATG 1 cut(s) 21
FauNDI CATATG 1 cut(s) 168
FokI GGATG 1 cut(s) 104
FspBI CTAG 1 cut(s) 527
GsaI CCCAGC 1 cut(s) 166
HaeIII GGCC 1 cut(s) 550
Hin1II CATG 1 cut(s) 25
HinfI GANTC 2 cut(s) 190, 570
Hpy166II GTNNAC 1 cut(s) 372
Hpy188I TCNGA 5 cut(s) 91, 150, 195, 273, 596
Hpy188III TCNNGA 4 cut(s) 70, 227, 298, 527
Hpy8I GTNNAC 1 cut(s) 372
HpyCH4III ACNGT 4 cut(s) 61, 155, 209, 251
HpyCH4V TGCA 8 cut(s) 10, 78, 95, 123, 237, 394, 414, 426
HpyF3I CTNAG 1 cut(s) 578
Hsp92II CATG 1 cut(s) 25
KpnI GGTACC 1 cut(s) 32
Kzo9I GATC 2 cut(s) 112, 581
LguI GCTCTTC 1 cut(s) 248
LpnPI CCDG 5 cut(s) 176, 240, 391, 436, 470
LweI GCATC 2 cut(s) 82, 319
MaeI CTAG 1 cut(s) 527
MalI GATC 2 cut(s) 114, 583
MboI GATC 2 cut(s) 112, 581
MboII GAAGA 5 cut(s) 25, 58, 125, 235, 503
MflI RGATCY 1 cut(s) 581
MluCI AATT 4 cut(s) 45, 220, 388, 400
MlyI GAGTC 1 cut(s) 579
MnlI CCTC 3 cut(s) 416, 506, 585
MseI TTAA 3 cut(s) 186, 219, 557
MslI CAYNNNNRTG 1 cut(s) 90
Mva1269I GAATGC 1 cut(s) 458
NdeI CATATG 1 cut(s) 168
NdeII GATC 2 cut(s) 112, 581
NlaIII CATG 1 cut(s) 25
NlaIV GGNNCC 1 cut(s) 30
PaqCI CACCTGC 1 cut(s) 386
PciSI GCTCTTC 1 cut(s) 248
PctI GAATGC 1 cut(s) 458
PfeI GAWTC 1 cut(s) 190
PleI GAGTC 1 cut(s) 578
PpsI GAGTC 1 cut(s) 578
PshBI ATTAAT 1 cut(s) 219
PsiI TTATAA 1 cut(s) 348
PspFI CCCAGC 1 cut(s) 162
PspN4I GGNNCC 1 cut(s) 30
PsuI RGATCY 1 cut(s) 581
RsaI GTAC 4 cut(s) 30, 53, 373, 534
RsaNI GTAC 4 cut(s) 29, 52, 372, 533
RseI CAYNNNNRTG 1 cut(s) 90
SapI GCTCTTC 1 cut(s) 248
SaqAI TTAA 3 cut(s) 186, 219, 557
Sau3AI GATC 2 cut(s) 112, 581
SchI GAGTC 1 cut(s) 579
SetI ASST 4 cut(s) 142, 243, 380, 432
SfaNI GCATC 2 cut(s) 82, 319
SmiMI CAYNNNNRTG 1 cut(s) 90
Sse9I AATT 4 cut(s) 45, 220, 388, 400
SspMI CTAG 1 cut(s) 527
TaaI ACNGT 4 cut(s) 61, 155, 209, 251
TaqI TCGA 2 cut(s) 69, 226
TasI AATT 4 cut(s) 45, 220, 388, 400
TatI WGTACW 1 cut(s) 51
TfiI GAWTC 1 cut(s) 190
Tru1I TTAA 3 cut(s) 186, 219, 557
Tru9I TTAA 3 cut(s) 186, 219, 557
TscAI CASTG 2 cut(s) 214, 421
TspRI CASTG 2 cut(s) 214, 421
VspI ATTAAT 1 cut(s) 219
XapI RAATTY 1 cut(s) 388
XbaI TCTAGA 1 cut(s) 526
XspI CTAG 1 cut(s) 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.