FvH4_4g33870

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
31921752 .. 31926438
4687 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g33870.t2

Sequence Viewer

Length: 1518 bp
ATGGAAGTGAGGAAGGACTCCATGGCTGTTCTGCTCCTTCTCATTTTAGCCGTGTCTTCAGTTTCAGCTGCTGAAGATGCATTTGTGGGTGTAAACCTTGGTACAGACCTCTCTGACATGCCAAGTCCAACTGTGGTGGTTGCTCTTCTCAAAGCTCAAAACATACGACATATCAGGCTCTATGATGCAGACAGAGCCATGCTCCTTGCTCTTGCAAACACAGGCATCCAAGTAACTGTTTCGGTCCCCAATGATCAGCTCCTTGGGATAGGTCAGTCCAATGCCACCGCGGCCAATTGGATTACTCGCAATGTCATAGCGCATGTTCCTGCCACAAACATAACAGCTATAGCTGTCGGATCTGAAGTTCTAACTGCCCTCCCAAATGCTGCTCCAGTGTTGGTCTCTGCCCTAAAGTTCATTCACTCTGCACTTGTTGCGTCTAACCTTGATCGCCAGATTAAAGTCTCTACTCCACACTCTTCCTCCATTATTCTTGACTCCTTTCCTCCTTCCCAAGCCTTCTTTAATCGCTCATGGGACAAGGTCATGGTTCCGGTGCTCAAATTTTTGCAATCTACAGATTCATATCTCATGCTCAATGCCTACCCATACTATGATTACATGCAATCCAATGGTGTGATCCCCTTGGACTATGCACTTTTCCGCCCTCTCCCTCCAAACAAGGAAGCCGTGGATGCCAATACATTGCTGCATTATACTAATGTCTTTGATGCAATTGTTGATGCCACGTATTTTGCAATGTCCTATCTAAACATCACAAATCTCCCCATTGTAGTGACTGAGTCAGGCTGGCCCTCTAAGGGTGATTCTGCAGAGCCAGATGCTACACTTGACAATGCTAACACTTACAACAGTAACCTGATCAAGCATGTGCTTAACAACACAGGGACTCCTAAGCATCCTGGGATTGCTGTTAGTACATACATTTATGAGCTCTACAATGAGGATTTGAGACCGGGATCCGTTTCCGAAAAGAACTGGGGACTATTTGATGCAAATGGGTTGCCGGTTTATACCTTACACTTGACAGGTGCTGGAACTGTGTTGGCAAACGACACAACGAACCAAACCTTTTGTGTCGCAAAGGATGGTGCTGACAGAAAGATGCTACAGGCAGCCCTAGATTGGGCTTGTGGACCTGGAAAAGTTGATTGTTCACCTATGCTGCAAGGGCAACCATGTTATGAACCAGACAATGTGGTGACTCATGCAACATACGCTTTCAATGCATACTATCAGAAGATGGCCAAGTCTCCTGGGACTTGTGATTTCAAAGGGGTAGCTACTATTACTACCACAGACCCAAGTCACGGTTCTTGTATAGTTCCTGGAAGTGCTGGAAGAAATGGCACATTTGATAATAGCACATCACTCGCTCCATCTTCAAATTCCACAACCGTTTCTTCTGGGTGCTCAGTAATGTTCCATACAGTTGGTTCCTTTGCAACCTCTGCCATCATCGGTTTCTTAGTTCTAACTGCAGTATTCTTGTAG

Protein Analysis

506

Amino Acids

53.99

Weight (kDa)

5.29

Isoelectric Point (pI)

37.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 29 - 349 4.7e-77 Glycosyl hydrolases family 17
X8 PF07983 366 - 437 1.2e-20 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011673)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 290
AciI CCGC 3 cut(s) 288, 290, 667
AclWI GGATC 4 cut(s) 367, 637, 978, 991
AcoI YGGCCR 2 cut(s) 291, 1269
AcsI RAATTY 2 cut(s) 566, 1411
AcuI CTGAAG 3 cut(s) 42, 93, 384
AfaI GTAC 2 cut(s) 103, 943
AfiI CCNNNNNNNGG 4 cut(s) 824, 1149, 1150, 1334
AgsI TTSAA 3 cut(s) 1249, 1297, 1410
AjnI CCWGG 4 cut(s) 925, 1162, 1279, 1351
AjuI GAANNNNNNNTTGG 2 cut(s) 1321, 1353
AloI GAACNNNNNNTCC 2 cut(s) 351, 383
AluBI AGCT 7 cut(s) 68, 155, 259, 347, 353, 958, 1307
AluI AGCT 7 cut(s) 68, 155, 259, 347, 353, 958, 1307
Alw21I GWGCWC 3 cut(s) 564, 960, 1439
Alw26I GTCTC 4 cut(s) 409, 472, 970, 1281
AlwI GGATC 4 cut(s) 367, 637, 978, 991
AlwNI CAGNNNCTG 2 cut(s) 71, 1058
AoxI GGCC 3 cut(s) 291, 815, 1269
ApeKI GCWGC 5 cut(s) 68, 389, 712, 1139, 1189
ApoI RAATTY 2 cut(s) 566, 1411
AspLEI GCGC 1 cut(s) 322
AspS9I GGNCC 3 cut(s) 244, 816, 1160
AsuC2I CCSGG 1 cut(s) 981
AsuHPI GGTGA 3 cut(s) 839, 1173, 1237
AvaII GGWCC 2 cut(s) 244, 1160
BalI TGGCCA 1 cut(s) 1271
BamHI GGATCC 1 cut(s) 983
BanII GRGCYC 1 cut(s) 960
BbsI GAAGAC 1 cut(s) 48
Bbv12I GWGCWC 3 cut(s) 564, 960, 1439
BbvI GCAGC 5 cut(s) 55, 376, 699, 1151, 1176
BccI CCATC 4 cut(s) 1106, 1261, 1411, 1487
BceAI ACGGC 2 cut(s) 35, 677
BcgI CGANNNNNNTGC 2 cut(s) 1378, 1412
BciT130I CCWGG 4 cut(s) 927, 1164, 1281, 1353
BclI TGATCA 2 cut(s) 253, 885
BcnI CCSGG 1 cut(s) 981
BcoDI GTCTC 4 cut(s) 409, 472, 970, 1281
BfaI CTAG 1 cut(s) 1145
BfmI CTRYAG 5 cut(s) 348, 579, 834, 1133, 1503
BglI GCCNNNNNGGC 1 cut(s) 290
BisI GCNGC 6 cut(s) 69, 291, 390, 713, 1140, 1190
BlsI GCNGC 6 cut(s) 70, 292, 391, 714, 1141, 1191
Bme1390I CCNGG 5 cut(s) 927, 981, 1164, 1281, 1353
Bme18I GGWCC 2 cut(s) 244, 1160
BmgT120I GGNCC 3 cut(s) 244, 816, 1160
BmiI GGNNCC 4 cut(s) 246, 555, 985, 1462
BmrFI CCNGG 5 cut(s) 927, 981, 1164, 1281, 1353
BmrI ACTGGG 1 cut(s) 1012
BmuI ACTGGG 1 cut(s) 1012
BoxI GACNNNNGTC 1 cut(s) 1329
BpiI GAAGAC 1 cut(s) 48
BplI GAGNNNNNCTC 2 cut(s) 186, 218
BpmI CTGGAG 1 cut(s) 378
Bpu10I CCTNAGC 1 cut(s) 918
BpuMI CCSGG 1 cut(s) 981
BsaAI YACGTR 1 cut(s) 753
BsaBI GATNNNNATC 1 cut(s) 588
BsaI GGTCTC 2 cut(s) 409, 970
BsaJI CCNNGG 8 cut(s) 21, 97, 262, 288, 648, 693, 926, 1280
BsaWI WCCGGW 1 cut(s) 556
BsaXI ACNNNNNCTCC 4 cut(s) 470, 500, 898, 928
Bsc4I CCNNNNNNNGG 4 cut(s) 824, 1149, 1150, 1334
Bse118I RCCGGY 1 cut(s) 1030
Bse1I ACTGG 2 cut(s) 395, 1007
Bse3DI GCAATG 3 cut(s) 316, 707, 768
Bse8I GATNNNNATC 1 cut(s) 588
BseBI CCWGG 4 cut(s) 927, 1164, 1281, 1353
BseDI CCNNGG 8 cut(s) 21, 97, 262, 288, 648, 693, 926, 1280
BseGI GGATG 4 cut(s) 225, 703, 922, 1117
BseJI GATNNNNATC 1 cut(s) 588
BseLI CCNNNNNNNGG 4 cut(s) 824, 1149, 1150, 1334
BseMI GCAATG 3 cut(s) 316, 707, 768
BseMII CTCAG 2 cut(s) 795, 1452
BseNI ACTGG 2 cut(s) 395, 1007
BseXI GCAGC 5 cut(s) 55, 376, 699, 1151, 1176
BsgI GTGCAG 1 cut(s) 414
Bsh1236I CGCG 1 cut(s) 290
BshFI GGCC 3 cut(s) 293, 817, 1271
BsiHKAI GWGCWC 3 cut(s) 564, 960, 1439
BsiSI CCGG 3 cut(s) 557, 980, 1031
BslFI GGGAC 5 cut(s) 230, 554, 925, 1020, 1297
BslI CCNNNNNNNGG 4 cut(s) 824, 1149, 1150, 1334
BsmAI GTCTC 4 cut(s) 409, 472, 970, 1281
BsmFI GGGAC 5 cut(s) 230, 554, 925, 1020, 1297
BsnI GGCC 3 cut(s) 293, 817, 1271
Bso31I GGTCTC 2 cut(s) 409, 970
Bsp1286I GDGCHC 3 cut(s) 564, 960, 1439
Bsp143I GATC 6 cut(s) 253, 359, 451, 642, 885, 983
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 3 cut(s) 288, 290, 667
BspANI GGCC 3 cut(s) 293, 817, 1271
BspCNI CTCAG 2 cut(s) 796, 1451
BspFNI CGCG 1 cut(s) 290
BspLI GGNNCC 4 cut(s) 246, 555, 985, 1462
BspMAI CTGCAG 2 cut(s) 838, 1507
BspPI GGATC 4 cut(s) 367, 637, 978, 991
BspQI GCTCTTC 1 cut(s) 150
BspTNI GGTCTC 2 cut(s) 409, 970
BsrDI GCAATG 3 cut(s) 316, 707, 768
BsrFI RCCGGY 1 cut(s) 1030
BsrI ACTGG 2 cut(s) 395, 1007
BssAI RCCGGY 1 cut(s) 1030
BssECI CCNNGG 8 cut(s) 21, 97, 262, 288, 648, 693, 926, 1280
BssMI GATC 6 cut(s) 253, 359, 451, 642, 885, 983
BssT1I CCWWGG 4 cut(s) 21, 97, 262, 648
Bst2UI CCWGG 4 cut(s) 927, 1164, 1281, 1353
Bst4CI ACNGT 7 cut(s) 133, 238, 878, 1066, 1337, 1423, 1456
Bst6I CTCTTC 2 cut(s) 150, 487
BstAPI GCANNNNNTGC 2 cut(s) 437, 1475
BstBAI YACGTR 1 cut(s) 753
BstC8I GCNNGC 1 cut(s) 815
BstDEI CTNAG 5 cut(s) 804, 822, 918, 1438, 1492
BstDSI CCRYGG 3 cut(s) 21, 288, 693
BstF5I GGATG 4 cut(s) 225, 703, 922, 1117
BstFNI CGCG 1 cut(s) 290
BstHHI GCGC 1 cut(s) 322
BstKTI GATC 6 cut(s) 256, 362, 454, 645, 888, 986
BstMAI GTCTC 4 cut(s) 409, 472, 970, 1281
BstMBI GATC 6 cut(s) 253, 359, 451, 642, 885, 983
BstMWI GCNNNNNNNGC 9 cut(s) 77, 194, 290, 437, 698, 1195, 1241, 1250, 1475
BstNI CCWGG 4 cut(s) 927, 1164, 1281, 1353
BstNSI RCATGY 4 cut(s) 121, 326, 628, 896
BstPAI GACNNNNGTC 1 cut(s) 1329
BstSCI CCNGG 5 cut(s) 925, 979, 1162, 1279, 1351
BstSFI CTRYAG 5 cut(s) 348, 579, 834, 1133, 1503
BstUI CGCG 1 cut(s) 290
BstV1I GCAGC 5 cut(s) 55, 376, 699, 1151, 1176
BstV2I GAAGAC 1 cut(s) 48
BstX2I RGATCY 2 cut(s) 359, 983
BstXI CCANNNNNNTGG 1 cut(s) 1457
BstYI RGATCY 2 cut(s) 359, 983
BsuRI GGCC 3 cut(s) 293, 817, 1271
BtgI CCRYGG 3 cut(s) 21, 288, 693
BtsCI GGATG 4 cut(s) 225, 703, 922, 1117
BtsIMutI CAGTG 1 cut(s) 402
Cac8I GCNNGC 1 cut(s) 815
CaiI CAGNNNCTG 2 cut(s) 71, 1058
CfoI GCGC 1 cut(s) 322
Cfr10I RCCGGY 1 cut(s) 1030
Cfr13I GGNCC 3 cut(s) 244, 816, 1160
Cfr42I CCGCGG 1 cut(s) 291
CseI GACGC 1 cut(s) 429
Csp6I GTAC 2 cut(s) 102, 942
CspCI CAANNNNNGTGG 4 cut(s) 117, 152, 739, 774
CviQI GTAC 2 cut(s) 102, 942
DdeI CTNAG 5 cut(s) 804, 822, 918, 1438, 1492
DpnI GATC 6 cut(s) 255, 361, 453, 644, 887, 985
DpnII GATC 6 cut(s) 253, 359, 451, 642, 885, 983
EaeI YGGCCR 2 cut(s) 291, 1269
Eam1104I CTCTTC 2 cut(s) 150, 487
EarI CTCTTC 2 cut(s) 150, 487
EciI GGCGGA 1 cut(s) 656
Ecl136II GAGCTC 1 cut(s) 958
Eco130I CCWWGG 4 cut(s) 21, 97, 262, 648
Eco24I GRGCYC 1 cut(s) 960
Eco31I GGTCTC 2 cut(s) 409, 970
Eco47I GGWCC 2 cut(s) 244, 1160
Eco53kI GAGCTC 1 cut(s) 958
Eco57I CTGAAG 3 cut(s) 42, 93, 384
EcoICRI GAGCTC 1 cut(s) 958
EcoRII CCWGG 4 cut(s) 925, 1162, 1279, 1351
EcoT14I CCWWGG 4 cut(s) 21, 97, 262, 648
EcoT22I ATGCAT 2 cut(s) 82, 1255
EcoT38I GRGCYC 1 cut(s) 960
ErhI CCWWGG 4 cut(s) 21, 97, 262, 648
FaqI GGGAC 5 cut(s) 230, 554, 925, 1020, 1297
FbaI TGATCA 2 cut(s) 253, 885
Fnu4HI GCNGC 6 cut(s) 69, 291, 390, 713, 1140, 1190
FokI GGATG 4 cut(s) 212, 710, 909, 1124
FriOI GRGCYC 1 cut(s) 960
Fsp4HI GCNGC 6 cut(s) 69, 291, 390, 713, 1140, 1190
FspBI CTAG 1 cut(s) 1145
GlaI GCGC 1 cut(s) 321
GluI GCNGC 6 cut(s) 69, 291, 390, 713, 1140, 1190
GsuI CTGGAG 1 cut(s) 378
HaeIII GGCC 3 cut(s) 293, 817, 1271
HapII CCGG 3 cut(s) 557, 980, 1031
HgaI GACGC 1 cut(s) 429
HhaI GCGC 1 cut(s) 322
Hin6I GCGC 1 cut(s) 320
HinP1I GCGC 1 cut(s) 320
HinfI GANTC 7 cut(s) 17, 500, 584, 806, 830, 913, 1228
HpaII CCGG 3 cut(s) 557, 980, 1031
HphI GGTGA 3 cut(s) 839, 1173, 1237
Hpy166II GTNNAC 3 cut(s) 94, 1160, 1181
Hpy188I TCNGA 5 cut(s) 115, 359, 364, 994, 1263
Hpy188III TCNNGA 1 cut(s) 497
Hpy8I GTNNAC 3 cut(s) 94, 1160, 1181
HpyAV CCTTC 4 cut(s) 7, 47, 522, 532
HpyCH4III ACNGT 7 cut(s) 133, 238, 878, 1066, 1337, 1423, 1456
HpyCH4IV ACGT 1 cut(s) 752
HpyF10VI GCNNNNNNNGC 9 cut(s) 77, 194, 290, 437, 698, 1195, 1241, 1250, 1475
HpyF3I CTNAG 5 cut(s) 804, 822, 918, 1438, 1492
HpySE526I ACGT 1 cut(s) 752
HspAI GCGC 1 cut(s) 320
Ksp22I TGATCA 2 cut(s) 253, 885
KspI CCGCGG 1 cut(s) 291
Kzo9I GATC 6 cut(s) 253, 359, 451, 642, 885, 983
LguI GCTCTTC 1 cut(s) 150
LmnI GCTCC 5 cut(s) 39, 207, 264, 397, 1405
Lsp1109I GCAGC 5 cut(s) 55, 376, 699, 1151, 1176
MaeI CTAG 1 cut(s) 1145
MaeII ACGT 1 cut(s) 752
MaeIII GTNAC 5 cut(s) 232, 799, 878, 1225, 1331
MalI GATC 6 cut(s) 255, 361, 453, 644, 887, 985
MboI GATC 6 cut(s) 253, 359, 451, 642, 885, 983
MboII GAAGA 8 cut(s) 48, 86, 137, 474, 1276, 1377, 1398, 1419
MfeI CAATTG 2 cut(s) 295, 738
MflI RGATCY 2 cut(s) 359, 983
MhlI GDGCHC 3 cut(s) 564, 960, 1439
MlsI TGGCCA 1 cut(s) 1271
MluCI AATT 4 cut(s) 295, 566, 738, 1411
MluNI TGGCCA 1 cut(s) 1271
MlyI GAGTC 5 cut(s) 11, 494, 815, 907, 1222
MmeI TCCRAC 2 cut(s) 152, 337
Mox20I TGGCCA 1 cut(s) 1271
Mph1103I ATGCAT 2 cut(s) 82, 1255
MscI TGGCCA 1 cut(s) 1271
MseI TTAA 3 cut(s) 462, 528, 900
MslI CAYNNNNRTG 1 cut(s) 797
Msp20I TGGCCA 1 cut(s) 1271
MspA1I CMGCKG 2 cut(s) 68, 290
MspI CCGG 3 cut(s) 557, 980, 1031
MspR9I CCNGG 5 cut(s) 927, 981, 1164, 1281, 1353
MunI CAATTG 2 cut(s) 295, 738
MvaI CCWGG 4 cut(s) 927, 1164, 1281, 1353
MvnI CGCG 1 cut(s) 290
MwoI GCNNNNNNNGC 9 cut(s) 77, 194, 290, 437, 698, 1195, 1241, 1250, 1475
NciI CCSGG 1 cut(s) 981
NcoI CCATGG 1 cut(s) 21
NdeII GATC 6 cut(s) 253, 359, 451, 642, 885, 983
NlaIV GGNNCC 4 cut(s) 246, 555, 985, 1462
NmuCI GTSAC 3 cut(s) 799, 1225, 1331
NsiI ATGCAT 2 cut(s) 82, 1255
NspI RCATGY 4 cut(s) 121, 326, 628, 896
PciSI GCTCTTC 1 cut(s) 150
PfeI GAWTC 2 cut(s) 584, 830
PflFI GACNNNGTC 2 cut(s) 545, 805
PfoI TCCNGGA 1 cut(s) 1351
PkrI GCNGC 6 cut(s) 70, 292, 391, 714, 1141, 1191
PleI GAGTC 5 cut(s) 11, 494, 814, 907, 1222
PpsI GAGTC 5 cut(s) 11, 494, 814, 907, 1222
Ppu21I YACGTR 1 cut(s) 753
PshAI GACNNNNGTC 1 cut(s) 1329
Psp124BI GAGCTC 1 cut(s) 960
Psp6I CCWGG 4 cut(s) 925, 1162, 1279, 1351
PspGI CCWGG 4 cut(s) 925, 1162, 1279, 1351
PspN4I GGNNCC 4 cut(s) 246, 555, 985, 1462
PspPI GGNCC 3 cut(s) 244, 816, 1160
PstI CTGCAG 2 cut(s) 838, 1507
PstNI CAGNNNCTG 2 cut(s) 71, 1058
PsuI RGATCY 2 cut(s) 359, 983
PsyI GACNNNGTC 2 cut(s) 545, 805
PvuII CAGCTG 1 cut(s) 68
RsaI GTAC 2 cut(s) 103, 943
RsaNI GTAC 2 cut(s) 102, 942
RseI CAYNNNNRTG 1 cut(s) 797
SacI GAGCTC 1 cut(s) 960
SacII CCGCGG 1 cut(s) 291
SapI GCTCTTC 1 cut(s) 150
SaqAI TTAA 3 cut(s) 462, 528, 900
SatI GCNGC 6 cut(s) 69, 291, 390, 713, 1140, 1190
Sau3AI GATC 6 cut(s) 253, 359, 451, 642, 885, 983
Sau96I GGNCC 3 cut(s) 244, 816, 1160
SchI GAGTC 5 cut(s) 11, 494, 815, 907, 1222
ScrFI CCNGG 5 cut(s) 927, 981, 1164, 1281, 1353
SduI GDGCHC 3 cut(s) 564, 960, 1439
SfcI CTRYAG 5 cut(s) 348, 579, 834, 1133, 1503
Sfr303I CCGCGG 1 cut(s) 291
SgrBI CCGCGG 1 cut(s) 291
SinI GGWCC 2 cut(s) 244, 1160
SmiMI CAYNNNNRTG 1 cut(s) 797
Sse9I AATT 4 cut(s) 295, 566, 738, 1411
SsiI CCGC 3 cut(s) 288, 290, 667
SspMI CTAG 1 cut(s) 1145
SstI GAGCTC 1 cut(s) 960
StyD4I CCNGG 5 cut(s) 925, 979, 1162, 1279, 1351
StyI CCWWGG 4 cut(s) 21, 97, 262, 648
TaaI ACNGT 7 cut(s) 133, 238, 878, 1066, 1337, 1423, 1456
TaiI ACGT 1 cut(s) 755
TaqII GACCGA 1 cut(s) 232
TasI AATT 4 cut(s) 295, 566, 738, 1411
TatI WGTACW 1 cut(s) 941
TauI GCSGC 1 cut(s) 293
TfiI GAWTC 2 cut(s) 584, 830
Tru1I TTAA 3 cut(s) 462, 528, 900
Tru9I TTAA 3 cut(s) 462, 528, 900
TscAI CASTG 1 cut(s) 402
TseFI GTSAC 3 cut(s) 799, 1225, 1331
TseI GCWGC 5 cut(s) 68, 389, 712, 1139, 1189
Tsp45I GTSAC 3 cut(s) 799, 1225, 1331
TspDTI ATGAA 3 cut(s) 409, 576, 1224
TspGWI ACGGA 1 cut(s) 976
TspRI CASTG 1 cut(s) 402
Tth111I GACNNNGTC 2 cut(s) 545, 805
VpaK11BI GGWCC 2 cut(s) 244, 1160
XapI RAATTY 2 cut(s) 566, 1411
XceI RCATGY 4 cut(s) 121, 326, 628, 896
XspI CTAG 1 cut(s) 1145
Zsp2I ATGCAT 2 cut(s) 82, 1255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.