Rh4AG401100

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Forward (+)
70409920 .. 70414479
4560 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG401100.1

Sequence Viewer

Length: 1467 bp
ATGAAATTAAAACATAGTGAATGTAGTATACATAATGATCAAGTGTATGTTGAAGATGGGATTCTCATTCTGGGGGATTTTTCCTTGAGTAATCTTGCAGTCTTTGTTACTGTTTTTGCAGATGCTTTTGTGGGTGTAAACCTTGGTACAGACCTCTCTGACATGCCAAGTCCAACTGAGGTGGTTGCTCTTCTTAAAGCTCAAAACATTCGACATATCAGGCTCTACGATGCAGACAGAGCCATGCTCCTTGCTCTTGCAAACACAGGCATCCAAGTAACTGTTTCTGTCCCCAATGATCAGCTCCTTGGGATAGGTCAGTCCAATGCCACCGCGGCCAACTGGATTACTCGCAATGTGATAGCACATGTTCCTGCAACAAACATAACAGCTATAGCTGTCGGATCTGAAGTCCTAACTGCCCTCCCAAATGCTGCTCCAGTGCTAGTCTCTGCCCTAAAGTTCATTCACTCAGCACTTGTTGCGTCTAACCTTGATCGCCAAATTAAAGTCTCTACTCCACACTCTTCCTCCATTATTCTTGACTCCTTTCCTCCTTCCCAAGCCTTCTTCAATCGCTCATGGGACAAGGTCATGGTTCCGGTGCTCAATTTTTTGCAGTCTACAGATTCATATTTCATGCTCAATGTCTACCCATACTATGATTATATGCAATCAAACGGTGTGATTCCCTTGGACTATGCACTTTTCCGCCCTCTCCCTCCAAACAAGGAAGCTGTTGATGCTAATACATTGCTGCATTATACTAATGTCTTTGATGCAATTGTTGATGCCGCGTATTTTGCAATGTCCTATCTAAACATTACAAATCTCCCCATTGTAGTGACTGAGTCAGGCTGGCCCTCCAAGGGTGACTCAGCAGAGCCAGATGCCACACTTGACAATGCTAACACTTACAATAGTAACCTAATCAAGCATGTGCTTAACAACACTGGGACTCCTAAGCATCCTGGGATTGCTGTTAGTACTTACATTTATGAGCTCTACAATGAGGATTTGAGACCTGGATCAGTCTCCGAAAAGAACTGGGGACTTTTTGATGCAAATGGGTTGCCAGTTTATACCTTACACTTGACAGGTGCTGGAACTGTGTTGGCAAACGACACAACGAACCAAACATTTTGTGTCGCGAAGGAGGGTGCTGACAAAAAGATGCTACAGGCAGCCCTAGATTGGGCTTGTGGACCTGGAAAAGTTGATTGCTCACCTATGCTGCAAGGGAAACCTTGTTATGAACCAGACAATGTGGTGACTCATGCAACATATGCTTTCAATGCATACTTTCAGAAGATGGCCAAGTCTCCTGGGACTTGTGATTTCAAAGGGGTAGCTACTATTACTACCACAGACCCAAGTCATGGTTCTTGTATAGTTCCTGGAAGGTACAAGTTAAAACTTGCTGATGTTATTATAAAACATAATTTTACTTGCACAAGACTGCCATGA

Protein Analysis

488

Amino Acids

53.03

Weight (kDa)

5.58

Isoelectric Point (pI)

36.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 44 - 364 1.1e-77 Glycosyl hydrolases family 17
X8 PF07983 381 - 452 7.9e-20 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011673)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1433
AccB7I CCANNNNNTGG 1 cut(s) 1379
AccI GTMKAC 3 cut(s) 28, 623, 651
AccII CGCG 3 cut(s) 335, 797, 1151
AciI CCGC 4 cut(s) 333, 335, 712, 795
AclWI GGATC 2 cut(s) 412, 1036
AcoI YGGCCR 2 cut(s) 336, 1314
AcuI CTGAAG 1 cut(s) 429
AfaI GTAC 3 cut(s) 148, 988, 1406
AfiI CCNNNNNNNGG 4 cut(s) 869, 1194, 1195, 1379
AflIII ACRYGT 1 cut(s) 367
AgsI TTSAA 4 cut(s) 53, 574, 1294, 1342
AjnI CCWGG 5 cut(s) 970, 1024, 1207, 1324, 1396
AjuI GAANNNNNNNTTGG 2 cut(s) 1366, 1398
AluBI AGCT 7 cut(s) 200, 304, 392, 398, 737, 1003, 1352
AluI AGCT 7 cut(s) 200, 304, 392, 398, 737, 1003, 1352
Alw21I GWGCWC 2 cut(s) 609, 1005
Alw26I GTCTC 5 cut(s) 454, 517, 1015, 1039, 1326
AlwI GGATC 2 cut(s) 412, 1036
AlwNI CAGNNNCTG 1 cut(s) 1103
AoxI GGCC 3 cut(s) 336, 860, 1314
ApeKI GCWGC 4 cut(s) 434, 757, 1184, 1234
AspS9I GGNCC 2 cut(s) 861, 1205
AsuHPI GGTGA 3 cut(s) 884, 1218, 1282
AvaII GGWCC 1 cut(s) 1205
BalI TGGCCA 1 cut(s) 1316
BanII GRGCYC 1 cut(s) 1005
Bbv12I GWGCWC 2 cut(s) 609, 1005
BbvI GCAGC 4 cut(s) 421, 744, 1196, 1221
BccI CCATC 2 cut(s) 50, 1306
BciT130I CCWGG 5 cut(s) 972, 1026, 1209, 1326, 1398
BclI TGATCA 2 cut(s) 37, 298
BcoDI GTCTC 5 cut(s) 454, 517, 1015, 1039, 1326
BfaI CTAG 2 cut(s) 446, 1190
BfmI CTRYAG 3 cut(s) 393, 624, 1178
BglI GCCNNNNNGGC 1 cut(s) 335
BisI GCNGC 6 cut(s) 336, 435, 758, 795, 1185, 1235
BlsI GCNGC 6 cut(s) 337, 436, 759, 796, 1186, 1236
BmcAI AGTACT 1 cut(s) 988
Bme1390I CCNGG 5 cut(s) 972, 1026, 1209, 1326, 1398
Bme18I GGWCC 1 cut(s) 1205
BmgT120I GGNCC 2 cut(s) 861, 1205
BmiI GGNNCC 1 cut(s) 600
BmrFI CCNGG 5 cut(s) 972, 1026, 1209, 1326, 1398
BmrI ACTGGG 2 cut(s) 963, 1057
BmuI ACTGGG 2 cut(s) 963, 1057
BoxI GACNNNNGTC 1 cut(s) 1374
BplI GAGNNNNNCTC 2 cut(s) 231, 263
BpmI CTGGAG 1 cut(s) 423
Bpu10I CCTNAGC 1 cut(s) 963
BpuEI CTTGAG 1 cut(s) 106
BsaI GGTCTC 1 cut(s) 1015
BsaJI CCNNGG 7 cut(s) 142, 307, 333, 693, 867, 971, 1325
BsaWI WCCGGW 1 cut(s) 601
BsaXI ACNNNNNCTCC 4 cut(s) 515, 545, 943, 973
Bsc4I CCNNNNNNNGG 4 cut(s) 869, 1194, 1195, 1379
Bse1I ACTGG 5 cut(s) 347, 440, 958, 1052, 1076
Bse3DI GCAATG 3 cut(s) 361, 752, 813
BseBI CCWGG 5 cut(s) 972, 1026, 1209, 1326, 1398
BseDI CCNNGG 7 cut(s) 142, 307, 333, 693, 867, 971, 1325
BseGI GGATG 2 cut(s) 270, 967
BseLI CCNNNNNNNGG 4 cut(s) 869, 1194, 1195, 1379
BseMI GCAATG 3 cut(s) 361, 752, 813
BseMII CTCAG 4 cut(s) 168, 486, 840, 891
BseNI ACTGG 5 cut(s) 347, 440, 958, 1052, 1076
BseXI GCAGC 4 cut(s) 421, 744, 1196, 1221
Bsh1236I CGCG 3 cut(s) 335, 797, 1151
BshFI GGCC 3 cut(s) 338, 862, 1316
BsiHKAI GWGCWC 2 cut(s) 609, 1005
BsiSI CCGG 1 cut(s) 602
BslFI GGGAC 5 cut(s) 275, 599, 970, 1065, 1342
BslI CCNNNNNNNGG 4 cut(s) 869, 1194, 1195, 1379
BsmAI GTCTC 5 cut(s) 454, 517, 1015, 1039, 1326
BsmFI GGGAC 5 cut(s) 275, 599, 970, 1065, 1342
BsnI GGCC 3 cut(s) 338, 862, 1316
Bso31I GGTCTC 1 cut(s) 1015
Bsp1286I GDGCHC 2 cut(s) 609, 1005
Bsp143I GATC 5 cut(s) 37, 298, 404, 496, 1028
Bsp68I TCGCGA 1 cut(s) 1151
BspACI CCGC 4 cut(s) 333, 335, 712, 795
BspANI GGCC 3 cut(s) 338, 862, 1316
BspCNI CTCAG 4 cut(s) 169, 485, 841, 890
BspFNI CGCG 3 cut(s) 335, 797, 1151
BspLI GGNNCC 1 cut(s) 600
BspPI GGATC 2 cut(s) 412, 1036
BspQI GCTCTTC 1 cut(s) 195
BspTNI GGTCTC 1 cut(s) 1015
BsrDI GCAATG 3 cut(s) 361, 752, 813
BsrI ACTGG 5 cut(s) 347, 440, 958, 1052, 1076
BssECI CCNNGG 7 cut(s) 142, 307, 333, 693, 867, 971, 1325
BssMI GATC 5 cut(s) 37, 298, 404, 496, 1028
BssNAI GTATAC 1 cut(s) 29
BssT1I CCWWGG 4 cut(s) 142, 307, 693, 867
Bst1107I GTATAC 1 cut(s) 29
Bst2UI CCWGG 5 cut(s) 972, 1026, 1209, 1326, 1398
Bst4CI ACNGT 4 cut(s) 112, 283, 683, 1111
Bst6I CTCTTC 2 cut(s) 195, 532
BstAPI GCANNNNNTGC 2 cut(s) 482, 1286
BstC8I GCNNGC 1 cut(s) 860
BstDEI CTNAG 5 cut(s) 177, 472, 849, 877, 963
BstDSI CCRYGG 1 cut(s) 333
BstF5I GGATG 2 cut(s) 270, 967
BstFNI CGCG 3 cut(s) 335, 797, 1151
BstKTI GATC 5 cut(s) 40, 301, 407, 499, 1031
BstMAI GTCTC 5 cut(s) 454, 517, 1015, 1039, 1326
BstMBI GATC 5 cut(s) 37, 298, 404, 496, 1028
BstMWI GCNNNNNNNGC 7 cut(s) 239, 335, 482, 743, 803, 1286, 1295
BstNI CCWGG 5 cut(s) 972, 1026, 1209, 1326, 1398
BstNSI RCATGY 3 cut(s) 166, 371, 941
BstPAI GACNNNNGTC 1 cut(s) 1374
BstSCI CCNGG 5 cut(s) 970, 1024, 1207, 1324, 1396
BstSFI CTRYAG 3 cut(s) 393, 624, 1178
BstUI CGCG 3 cut(s) 335, 797, 1151
BstV1I GCAGC 4 cut(s) 421, 744, 1196, 1221
BstX2I RGATCY 1 cut(s) 404
BstYI RGATCY 1 cut(s) 404
BstZ17I GTATAC 1 cut(s) 29
BsuRI GGCC 3 cut(s) 338, 862, 1316
BtgI CCRYGG 1 cut(s) 333
BtsCI GGATG 2 cut(s) 270, 967
BtsIMutI CAGTG 2 cut(s) 447, 951
BtuMI TCGCGA 1 cut(s) 1151
Cac8I GCNNGC 1 cut(s) 860
CaiI CAGNNNCTG 1 cut(s) 1103
Cfr13I GGNCC 2 cut(s) 861, 1205
Cfr42I CCGCGG 1 cut(s) 336
CseI GACGC 1 cut(s) 474
Csp6I GTAC 3 cut(s) 147, 987, 1405
CspCI CAANNNNNGTGG 2 cut(s) 162, 197
CviQI GTAC 3 cut(s) 147, 987, 1405
DdeI CTNAG 5 cut(s) 177, 472, 849, 877, 963
DpnI GATC 5 cut(s) 39, 300, 406, 498, 1030
DpnII GATC 5 cut(s) 37, 298, 404, 496, 1028
EaeI YGGCCR 2 cut(s) 336, 1314
Eam1104I CTCTTC 2 cut(s) 195, 532
EarI CTCTTC 2 cut(s) 195, 532
EciI GGCGGA 1 cut(s) 701
Ecl136II GAGCTC 1 cut(s) 1003
Eco130I CCWWGG 4 cut(s) 142, 307, 693, 867
Eco24I GRGCYC 1 cut(s) 1005
Eco31I GGTCTC 1 cut(s) 1015
Eco47I GGWCC 1 cut(s) 1205
Eco53kI GAGCTC 1 cut(s) 1003
Eco57I CTGAAG 1 cut(s) 429
EcoICRI GAGCTC 1 cut(s) 1003
EcoRII CCWGG 5 cut(s) 970, 1024, 1207, 1324, 1396
EcoT14I CCWWGG 4 cut(s) 142, 307, 693, 867
EcoT22I ATGCAT 1 cut(s) 1300
EcoT38I GRGCYC 1 cut(s) 1005
ErhI CCWWGG 4 cut(s) 142, 307, 693, 867
FaqI GGGAC 5 cut(s) 275, 599, 970, 1065, 1342
FauNDI CATATG 1 cut(s) 1285
FbaI TGATCA 2 cut(s) 37, 298
FblI GTMKAC 3 cut(s) 28, 623, 651
Fnu4HI GCNGC 6 cut(s) 336, 435, 758, 795, 1185, 1235
FokI GGATG 2 cut(s) 257, 954
FriOI GRGCYC 1 cut(s) 1005
Fsp4HI GCNGC 6 cut(s) 336, 435, 758, 795, 1185, 1235
FspBI CTAG 2 cut(s) 446, 1190
GluI GCNGC 6 cut(s) 336, 435, 758, 795, 1185, 1235
GsuI CTGGAG 1 cut(s) 423
HaeIII GGCC 3 cut(s) 338, 862, 1316
HapII CCGG 1 cut(s) 602
HgaI GACGC 1 cut(s) 474
HinfI GANTC 8 cut(s) 61, 545, 629, 688, 851, 875, 958, 1273
HpaII CCGG 1 cut(s) 602
HphI GGTGA 3 cut(s) 884, 1218, 1282
Hpy166II GTNNAC 5 cut(s) 29, 139, 624, 652, 1205
Hpy188I TCNGA 5 cut(s) 160, 404, 409, 1039, 1308
Hpy188III TCNNGA 2 cut(s) 542, 1150
Hpy8I GTNNAC 5 cut(s) 29, 139, 624, 652, 1205
HpyAV CCTTC 4 cut(s) 567, 577, 1147, 1395
HpyCH4III ACNGT 4 cut(s) 112, 283, 683, 1111
HpyF10VI GCNNNNNNNGC 7 cut(s) 239, 335, 482, 743, 803, 1286, 1295
HpyF3I CTNAG 5 cut(s) 177, 472, 849, 877, 963
Ksp22I TGATCA 2 cut(s) 37, 298
KspI CCGCGG 1 cut(s) 336
Kzo9I GATC 5 cut(s) 37, 298, 404, 496, 1028
LguI GCTCTTC 1 cut(s) 195
LmnI GCTCC 3 cut(s) 252, 309, 442
Lsp1109I GCAGC 4 cut(s) 421, 744, 1196, 1221
MaeI CTAG 2 cut(s) 446, 1190
MaeIII GTNAC 6 cut(s) 106, 277, 844, 872, 923, 1270
MalI GATC 5 cut(s) 39, 300, 406, 498, 1030
MboI GATC 5 cut(s) 37, 298, 404, 496, 1028
MboII GAAGA 5 cut(s) 65, 182, 519, 562, 1321
MfeI CAATTG 1 cut(s) 783
MflI RGATCY 1 cut(s) 404
MhlI GDGCHC 2 cut(s) 609, 1005
MlsI TGGCCA 1 cut(s) 1316
MluCI AATT 5 cut(s) 5, 504, 610, 783, 1441
MluNI TGGCCA 1 cut(s) 1316
MlyI GAGTC 5 cut(s) 539, 860, 869, 952, 1267
MmeI TCCRAC 2 cut(s) 197, 382
Mox20I TGGCCA 1 cut(s) 1316
Mph1103I ATGCAT 1 cut(s) 1300
MscI TGGCCA 1 cut(s) 1316
MseI TTAA 5 cut(s) 8, 195, 507, 945, 1412
MslI CAYNNNNRTG 1 cut(s) 842
Msp20I TGGCCA 1 cut(s) 1316
MspA1I CMGCKG 1 cut(s) 335
MspI CCGG 1 cut(s) 602
MspR9I CCNGG 5 cut(s) 972, 1026, 1209, 1326, 1398
MunI CAATTG 1 cut(s) 783
MvaI CCWGG 5 cut(s) 972, 1026, 1209, 1326, 1398
MvnI CGCG 3 cut(s) 335, 797, 1151
MwoI GCNNNNNNNGC 7 cut(s) 239, 335, 482, 743, 803, 1286, 1295
NdeI CATATG 1 cut(s) 1285
NdeII GATC 5 cut(s) 37, 298, 404, 496, 1028
NlaIV GGNNCC 1 cut(s) 600
NmuCI GTSAC 3 cut(s) 844, 872, 1270
NruI TCGCGA 1 cut(s) 1151
NsiI ATGCAT 1 cut(s) 1300
NspI RCATGY 3 cut(s) 166, 371, 941
PciI ACATGT 1 cut(s) 367
PciSI GCTCTTC 1 cut(s) 195
PfeI GAWTC 3 cut(s) 61, 629, 688
PflFI GACNNNGTC 2 cut(s) 590, 850
PflMI CCANNNNNTGG 1 cut(s) 1379
PfoI TCCNGGA 1 cut(s) 1396
PkrI GCNGC 6 cut(s) 337, 436, 759, 796, 1186, 1236
PleI GAGTC 5 cut(s) 539, 859, 869, 952, 1267
PpsI GAGTC 5 cut(s) 539, 859, 869, 952, 1267
PscI ACATGT 1 cut(s) 367
PshAI GACNNNNGTC 1 cut(s) 1374
PsiI TTATAA 1 cut(s) 1433
Psp124BI GAGCTC 1 cut(s) 1005
Psp6I CCWGG 5 cut(s) 970, 1024, 1207, 1324, 1396
PspGI CCWGG 5 cut(s) 970, 1024, 1207, 1324, 1396
PspN4I GGNNCC 1 cut(s) 600
PspPI GGNCC 2 cut(s) 861, 1205
PstNI CAGNNNCTG 1 cut(s) 1103
PsuI RGATCY 1 cut(s) 404
PsyI GACNNNGTC 2 cut(s) 590, 850
RruI TCGCGA 1 cut(s) 1151
RsaI GTAC 3 cut(s) 148, 988, 1406
RsaNI GTAC 3 cut(s) 147, 987, 1405
RseI CAYNNNNRTG 1 cut(s) 842
SacI GAGCTC 1 cut(s) 1005
SacII CCGCGG 1 cut(s) 336
SapI GCTCTTC 1 cut(s) 195
SaqAI TTAA 5 cut(s) 8, 195, 507, 945, 1412
SatI GCNGC 6 cut(s) 336, 435, 758, 795, 1185, 1235
Sau3AI GATC 5 cut(s) 37, 298, 404, 496, 1028
Sau96I GGNCC 2 cut(s) 861, 1205
ScaI AGTACT 1 cut(s) 988
SchI GAGTC 5 cut(s) 539, 860, 869, 952, 1267
ScrFI CCNGG 5 cut(s) 972, 1026, 1209, 1326, 1398
SduI GDGCHC 2 cut(s) 609, 1005
SfcI CTRYAG 3 cut(s) 393, 624, 1178
Sfr303I CCGCGG 1 cut(s) 336
SgrBI CCGCGG 1 cut(s) 336
SinI GGWCC 1 cut(s) 1205
SmiMI CAYNNNNRTG 1 cut(s) 842
SmlI CTYRAG 1 cut(s) 85
SmoI CTYRAG 1 cut(s) 85
Sse9I AATT 5 cut(s) 5, 504, 610, 783, 1441
SsiI CCGC 4 cut(s) 333, 335, 712, 795
SspMI CTAG 2 cut(s) 446, 1190
SstI GAGCTC 1 cut(s) 1005
StyD4I CCNGG 5 cut(s) 970, 1024, 1207, 1324, 1396
StyI CCWWGG 4 cut(s) 142, 307, 693, 867
TaaI ACNGT 4 cut(s) 112, 283, 683, 1111
TaqI TCGA 1 cut(s) 211
TasI AATT 5 cut(s) 5, 504, 610, 783, 1441
TatI WGTACW 1 cut(s) 986
TauI GCSGC 2 cut(s) 338, 797
TfiI GAWTC 3 cut(s) 61, 629, 688
Tru1I TTAA 5 cut(s) 8, 195, 507, 945, 1412
Tru9I TTAA 5 cut(s) 8, 195, 507, 945, 1412
TscAI CASTG 2 cut(s) 447, 958
TseFI GTSAC 3 cut(s) 844, 872, 1270
TseI GCWGC 4 cut(s) 434, 757, 1184, 1234
Tsp45I GTSAC 3 cut(s) 844, 872, 1270
TspDTI ATGAA 5 cut(s) 17, 454, 621, 628, 1269
TspRI CASTG 2 cut(s) 447, 958
Tth111I GACNNNGTC 2 cut(s) 590, 850
Van91I CCANNNNNTGG 1 cut(s) 1379
VpaK11BI GGWCC 1 cut(s) 1205
XceI RCATGY 3 cut(s) 166, 371, 941
XmiI GTMKAC 3 cut(s) 28, 623, 651
XspI CTAG 2 cut(s) 446, 1190
ZrmI AGTACT 1 cut(s) 988
Zsp2I ATGCAT 1 cut(s) 1300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.