Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0011673

Physical Location & Seq

Genomic Coordinates Reverse (-)

31389593 .. 31393912

Gene Structure 4320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G331300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1497 bp

ATGGCTGCTCTGCTACTGTTTTTCCTTTTGGCCGTCTCAGCAGTTTCCGCTGATGAAGATGCCTTCATCGGTGTAAACCTTGGTACAGACCTCTCTGACATGCCAAGCCCAACTCAGGTGGTGGCACTTCTTAAAGCTCAAAATATTCGACATATCAGGCTCTATGATGCAGACAGAGCCATGCTTCTCGCTCTTGCAAACACAGGCATCCAAGTGACTGTTTCTGTTCCCAATGATCAGCTCCTTGGGATTGGTCAGTCCAATGCCACTGCTGCCAACTGGATTGCCCGCAATGTGATAGCCCATGTCCCTGCCACCAACATCACTTCTATAGCTGTTGGATCTGAAGTCCTAAGTGCCCTCCCAAATGCTGCTCCAGTCCTAGTTTCTGCCCTAAAATTCATTCACTCTGCACTTGTCGCGTCTAACCTTGACCGCCAAATTAAAGTCTCTACTCCACACTCATCAGCCATTATTCTTGACTCCTTTCCACCGTCCCAAGCCTTCTTCAACCGCTCATGGGACCCTGTCATGGTTCCCCTGCTCAAATTTTTGCAGTCTACAGATTCATATCTCATGCTCAATGTCTACCCATATTATGATTACATGCAATCAAACGGTGTAATCCCCTTGGACTATGCACTTTTCCGCCCTCTCCCTCCAAACAAGGAAGCTGTGGATGCTAATACACTACTGCATTATACTAATGTCTTCGATGCAATTGTTGACGCAGCGTATTTTGCAATGTCCTATCTAAACTTCACTAAACTCCCCATTGTAGTGACCGAGTCAGGTTGGCCCTCCAAGGGTGACTCATCAGAGCCAGATGCCACACTTGATAATGCCAACACTTACAATAGTAACTTAATTAGGCATGTGCTTAACAACACAGGGACTCCTAAGCATCCTGGGATTGCTGTTAGTACTTACATTTATGAACTCTACAATGAGGATTTGAGACCTGGATCAGTCTCTGAAAAGAATTGGGGACTTTTTAATGCAAATGGAGTGCCAGTTTATACCTTGCACTTAACAGGTGCTGGAACTGTGTTGGCAAACGACACGACAAATCAAACTTTTTGTGTTGCGAAGGAGGGTGCTGACCAAAAGATGCTACAGGCAGCCTTGGACTGGGCTTGTGGACCGGGGAAAGTTGATTGCTCACCTTTGCTGCAGGGGCAACCATGTTATGAGCCAGATAATGTGCTTACACACGCAACATATGCTGTCAATGCCTATTTTCAGCGGATGGCTAAGTCTCCTGGGACTTGTGATTTCAAAGGGGTGGCTACGGTTACTACCACAGACCCAAGTCATGGCACTTGTATATTTCCAGGAAGTGGTGGAAGAAACAGCAGTTTCATCAATGGCACATCACTGGCTCCATCTTCAAATTCCACAACTTCTGGGTGCCTTTCACTATTTTTCTACAGTGGCGGTTCCTTCACAAGCTCTGTGATCATTGGTCTCTTAGTTTTGAGTGCAGTTTTCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

499

Amino Acids

53.27

Weight (kDa)

5.19

Isoelectric Point (pI)

37.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01630 AT2G01630 AT2G01630
fragaria_vesca	FvH4_4g33870 FvH4_4g33870
malus_domestica	MD13G1030200.v1.1 MD16G1021000.v1.1
prunus_persica	Prupe.1G331300_v2.0.a1
pyrus_communis	pycom13g01850 pycom16g01880
rosa_chinensis	RchiOBHm_Chr4g0443381
rosa_laevigata	RLG00000005934
rosa_roxburghii	Rroxscaffold_5G00383940
rosa_rugosa	Rorug04G0345800
rosa_samantha	Rh4AG401100 Rh4BG412600 Rh4CG428000 Rh4DG408100
rosa_wichuraiana	Rw4G034590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1410
AccB7I	CCANNNNNTGG	2 cut(s)	1316, 1340
AccBSI	CCGCTC	1 cut(s)	516
AccI	GTMKAC	2 cut(s)	560, 588
AccII	CGCG	1 cut(s)	422
AciI	CCGC	7 cut(s)	48, 289, 436, 514, 649, 1246, 1437
AclWI	GGATC	2 cut(s)	349, 973
AcoI	YGGCCR	1 cut(s)	30
AcsI	RAATTY	3 cut(s)	398, 548, 1393
AcuI	CTGAAG	1 cut(s)	366
AfaI	GTAC	2 cut(s)	85, 925
AfiI	CCNNNNNNNGG	7 cut(s)	115, 520, 532, 806, 1131, 1316, 1340
AgsI	TTSAA	3 cut(s)	511, 1279, 1392
AjnI	CCWGG	4 cut(s)	907, 961, 1261, 1333
AluBI	AGCT	5 cut(s)	137, 241, 335, 674, 1452
AluI	AGCT	5 cut(s)	137, 241, 335, 674, 1452
Alw26I	GTCTC	6 cut(s)	40, 454, 952, 976, 1263, 1472
AlwI	GGATC	2 cut(s)	349, 973
AlwNI	CAGNNNCTG	2 cut(s)	974, 1040
AoxI	GGCC	2 cut(s)	30, 797
ApeKI	GCWGC	6 cut(s)	5, 272, 371, 731, 1121, 1171
ApoI	RAATTY	3 cut(s)	398, 548, 1393
AspS9I	GGNCC	3 cut(s)	523, 798, 1142
AsuC2I	CCSGG	1 cut(s)	1146
AsuHPI	GGTGA	2 cut(s)	821, 1155
AvaII	GGWCC	2 cut(s)	523, 1142
BaeGI	GKGCMC	1 cut(s)	361
BanI	GGYRCC	1 cut(s)	1410
BbsI	GAAGAC	1 cut(s)	703
BbvI	GCAGC	5 cut(s)	259, 358, 743, 1133, 1158
BccI	CCATC	2 cut(s)	1243, 1393
BceAI	ACGGC	1 cut(s)	17
BciT130I	CCWGG	4 cut(s)	909, 963, 1263, 1335
BclI	TGATCA	2 cut(s)	235, 1458
BcnI	CCSGG	1 cut(s)	1146
BcoDI	GTCTC	6 cut(s)	40, 454, 952, 976, 1263, 1472
BfaI	CTAG	1 cut(s)	383
BfmI	CTRYAG	5 cut(s)	330, 561, 1115, 1172, 1429
BisI	GCNGC	6 cut(s)	6, 273, 372, 732, 1122, 1172
BlsI	GCNGC	6 cut(s)	7, 274, 373, 733, 1123, 1173
BmcAI	AGTACT	1 cut(s)	925
Bme1390I	CCNGG	5 cut(s)	909, 963, 1146, 1263, 1335
Bme18I	GGWCC	2 cut(s)	523, 1142
BmgT120I	GGNCC	3 cut(s)	523, 798, 1142
BmiI	GGNNCC	6 cut(s)	524, 525, 537, 1383, 1412, 1441
BmrFI	CCNGG	5 cut(s)	909, 963, 1146, 1263, 1335
BmrI	ACTGGG	1 cut(s)	1141
BmsI	GCATC	8 cut(s)	49, 157, 216, 670, 706, 817, 913, 1101
BmuI	ACTGGG	1 cut(s)	1141
BoxI	GACNNNNGTC	1 cut(s)	1311
BpiI	GAAGAC	1 cut(s)	703
BpmI	CTGGAG	1 cut(s)	360
Bpu10I	CCTNAGC	1 cut(s)	900
BpuMI	CCSGG	1 cut(s)	1146
BsaBI	GATNNNNATC	1 cut(s)	570
BsaI	GGTCTC	2 cut(s)	952, 1472
BsaJI	CCNNGG	8 cut(s)	79, 244, 630, 804, 908, 1125, 1145, 1262
BsaXI	ACNNNNNCTCC	4 cut(s)	880, 910, 999, 1029
Bsc4I	CCNNNNNNNGG	7 cut(s)	115, 520, 532, 806, 1131, 1316, 1340
Bse1I	ACTGG	5 cut(s)	284, 377, 1013, 1136, 1383
Bse3DI	GCAATG	2 cut(s)	298, 750
Bse8I	GATNNNNATC	1 cut(s)	570
BseBI	CCWGG	4 cut(s)	909, 963, 1263, 1335
BseDI	CCNNGG	8 cut(s)	79, 244, 630, 804, 908, 1125, 1145, 1262
BseGI	GGATG	4 cut(s)	207, 685, 904, 1254
BseJI	GATNNNNATC	1 cut(s)	570
BseLI	CCNNNNNNNGG	7 cut(s)	115, 520, 532, 806, 1131, 1316, 1340
BseMI	GCAATG	2 cut(s)	298, 750
BseMII	CTCAG	2 cut(s)	51, 128
BseNI	ACTGG	5 cut(s)	284, 377, 1013, 1136, 1383
BseSI	GKGCMC	1 cut(s)	361
BseXI	GCAGC	5 cut(s)	259, 358, 743, 1133, 1158
BsgI	GTGCAG	1 cut(s)	396
Bsh1236I	CGCG	1 cut(s)	422
BshFI	GGCC	2 cut(s)	32, 799
BshNI	GGYRCC	1 cut(s)	1410
BsiSI	CCGG	1 cut(s)	1145
BslFI	GGGAC	6 cut(s)	293, 481, 536, 907, 1002, 1279
BslI	CCNNNNNNNGG	7 cut(s)	115, 520, 532, 806, 1131, 1316, 1340
BsmAI	GTCTC	6 cut(s)	40, 454, 952, 976, 1263, 1472
BsmBI	CGTCTC	1 cut(s)	40
BsmFI	GGGAC	6 cut(s)	293, 481, 536, 907, 1002, 1279
BsnI	GGCC	2 cut(s)	32, 799
Bso31I	GGTCTC	2 cut(s)	952, 1472
Bsp1286I	GDGCHC	1 cut(s)	361
Bsp143I	GATC	4 cut(s)	235, 341, 965, 1458
BspACI	CCGC	7 cut(s)	48, 289, 436, 514, 649, 1246, 1437
BspANI	GGCC	2 cut(s)	32, 799
BspCNI	CTCAG	2 cut(s)	50, 127
BspFNI	CGCG	1 cut(s)	422
BspLI	GGNNCC	6 cut(s)	524, 525, 537, 1383, 1412, 1441
BspMAI	CTGCAG	1 cut(s)	1176
BspPI	GGATC	2 cut(s)	349, 973
BspT107I	GGYRCC	1 cut(s)	1410
BspTNI	GGTCTC	2 cut(s)	952, 1472
BsrBI	CCGCTC	1 cut(s)	516
BsrDI	GCAATG	2 cut(s)	298, 750
BsrI	ACTGG	5 cut(s)	284, 377, 1013, 1136, 1383
BssECI	CCNNGG	8 cut(s)	79, 244, 630, 804, 908, 1125, 1145, 1262
BssMI	GATC	4 cut(s)	235, 341, 965, 1458
BssT1I	CCWWGG	5 cut(s)	79, 244, 630, 804, 1125
Bst2UI	CCWGG	4 cut(s)	909, 963, 1263, 1335
Bst4CI	ACNGT	7 cut(s)	18, 220, 495, 620, 1048, 1294, 1433
BstAPI	GCANNNNNTGC	1 cut(s)	1223
BstC8I	GCNNGC	1 cut(s)	289
BstDEI	CTNAG	6 cut(s)	37, 114, 353, 900, 1254, 1471
BstF5I	GGATG	4 cut(s)	207, 685, 904, 1254
BstFNI	CGCG	1 cut(s)	422
BstKTI	GATC	4 cut(s)	238, 344, 968, 1461
BstMAI	GTCTC	6 cut(s)	40, 454, 952, 976, 1263, 1472
BstMBI	GATC	4 cut(s)	235, 341, 965, 1458
BstNI	CCWGG	4 cut(s)	909, 963, 1263, 1335
BstNSI	RCATGY	3 cut(s)	103, 610, 878
BstPAI	GACNNNNGTC	1 cut(s)	1311
BstSCI	CCNGG	5 cut(s)	907, 961, 1144, 1261, 1333
BstSFI	CTRYAG	5 cut(s)	330, 561, 1115, 1172, 1429
BstSLI	GKGCMC	1 cut(s)	361
BstUI	CGCG	1 cut(s)	422
BstV1I	GCAGC	5 cut(s)	259, 358, 743, 1133, 1158
BstV2I	GAAGAC	1 cut(s)	703
BstX2I	RGATCY	1 cut(s)	341
BstYI	RGATCY	1 cut(s)	341
BsuRI	GGCC	2 cut(s)	32, 799
BtsCI	GGATG	4 cut(s)	207, 685, 904, 1254
BtsI	GCAGTG	1 cut(s)	267
BtsIMutI	CAGTG	3 cut(s)	267, 1376, 1438
Cac8I	GCNNGC	1 cut(s)	289
CaiI	CAGNNNCTG	2 cut(s)	974, 1040
Cfr13I	GGNCC	3 cut(s)	523, 798, 1142
CseI	GACGC	2 cut(s)	411, 737
Csp6I	GTAC	2 cut(s)	84, 924
CspCI	CAANNNNNGTGG	2 cut(s)	99, 134
CviQI	GTAC	2 cut(s)	84, 924
DdeI	CTNAG	6 cut(s)	37, 114, 353, 900, 1254, 1471
DpnI	GATC	4 cut(s)	237, 343, 967, 1460
DpnII	GATC	4 cut(s)	235, 341, 965, 1458
EaeI	YGGCCR	1 cut(s)	30
EciI	GGCGGA	1 cut(s)	638
Eco130I	CCWWGG	5 cut(s)	79, 244, 630, 804, 1125
Eco31I	GGTCTC	2 cut(s)	952, 1472
Eco47I	GGWCC	2 cut(s)	523, 1142
Eco57I	CTGAAG	1 cut(s)	366
EcoO109I	RGGNCCY	1 cut(s)	523
EcoRII	CCWGG	4 cut(s)	907, 961, 1261, 1333
EcoT14I	CCWWGG	5 cut(s)	79, 244, 630, 804, 1125
ErhI	CCWWGG	5 cut(s)	79, 244, 630, 804, 1125
Esp3I	CGTCTC	1 cut(s)	40
FaqI	GGGAC	6 cut(s)	293, 481, 536, 907, 1002, 1279
FauI	CCCGC	1 cut(s)	296
FauNDI	CATATG	1 cut(s)	1222
FbaI	TGATCA	2 cut(s)	235, 1458
FblI	GTMKAC	2 cut(s)	560, 588
Fnu4HI	GCNGC	6 cut(s)	6, 273, 372, 732, 1122, 1172
FokI	GGATG	4 cut(s)	194, 692, 891, 1261
Fsp4HI	GCNGC	6 cut(s)	6, 273, 372, 732, 1122, 1172
FspBI	CTAG	1 cut(s)	383
GluI	GCNGC	6 cut(s)	6, 273, 372, 732, 1122, 1172
GsuI	CTGGAG	1 cut(s)	360
HaeIII	GGCC	2 cut(s)	32, 799
HapII	CCGG	1 cut(s)	1145
HgaI	GACGC	2 cut(s)	411, 737
HincII	GTYRAC	1 cut(s)	727
HindII	GTYRAC	1 cut(s)	727
HinfI	GANTC	5 cut(s)	482, 566, 788, 812, 895
HpaII	CCGG	1 cut(s)	1145
HphI	GGTGA	2 cut(s)	821, 1155
Hpy166II	GTNNAC	5 cut(s)	76, 561, 589, 727, 1142
Hpy188I	TCNGA	4 cut(s)	97, 346, 820, 976
Hpy188III	TCNNGA	1 cut(s)	479
Hpy8I	GTNNAC	5 cut(s)	76, 561, 589, 727, 1142
HpyAV	CCTTC	4 cut(s)	73, 514, 1084, 1453
HpyCH4III	ACNGT	7 cut(s)	18, 220, 495, 620, 1048, 1294, 1433
HpyF3I	CTNAG	6 cut(s)	37, 114, 353, 900, 1254, 1471
KflI	GGGWCCC	1 cut(s)	523
Ksp22I	TGATCA	2 cut(s)	235, 1458
Kzo9I	GATC	4 cut(s)	235, 341, 965, 1458
LmnI	GCTCC	3 cut(s)	246, 379, 1387
Lsp1109I	GCAGC	5 cut(s)	259, 358, 743, 1133, 1158
LweI	GCATC	8 cut(s)	49, 157, 216, 670, 706, 817, 913, 1101
MaeI	CTAG	1 cut(s)	383
MaeIII	GTNAC	5 cut(s)	214, 781, 809, 860, 1294
MalI	GATC	4 cut(s)	237, 343, 967, 1460
MbiI	CCGCTC	1 cut(s)	516
MboI	GATC	4 cut(s)	235, 341, 965, 1458
MboII	GAAGA	5 cut(s)	68, 499, 703, 1359, 1380
MfeI	CAATTG	1 cut(s)	720
MflI	RGATCY	1 cut(s)	341
MhlI	GDGCHC	1 cut(s)	361
MluCI	AATT	7 cut(s)	398, 441, 548, 720, 867, 982, 1393
MlyI	GAGTC	4 cut(s)	476, 797, 806, 889
MmeI	TCCRAC	1 cut(s)	319
MnlI	CCTC	7 cut(s)	101, 371, 663, 669, 811, 943, 1087
MseI	TTAA	6 cut(s)	132, 444, 866, 882, 996, 1031
MslI	CAYNNNNRTG	2 cut(s)	212, 779
MspA1I	CMGCKG	2 cut(s)	50, 1246
MspI	CCGG	1 cut(s)	1145
MspR9I	CCNGG	5 cut(s)	909, 963, 1146, 1263, 1335
MunI	CAATTG	1 cut(s)	720
MvaI	CCWGG	4 cut(s)	909, 963, 1263, 1335
MvnI	CGCG	1 cut(s)	422
NciI	CCSGG	1 cut(s)	1146
NdeI	CATATG	1 cut(s)	1222
NdeII	GATC	4 cut(s)	235, 341, 965, 1458
NlaIV	GGNNCC	6 cut(s)	524, 525, 537, 1383, 1412, 1441
NmuCI	GTSAC	3 cut(s)	214, 781, 809
NspI	RCATGY	3 cut(s)	103, 610, 878
PfeI	GAWTC	1 cut(s)	566
PflFI	GACNNNGTC	2 cut(s)	527, 787
PflMI	CCANNNNNTGG	2 cut(s)	1316, 1340
PfoI	TCCNGGA	1 cut(s)	1333
PkrI	GCNGC	6 cut(s)	7, 274, 373, 733, 1123, 1173
PleI	GAGTC	4 cut(s)	476, 796, 806, 889
PpsI	GAGTC	4 cut(s)	476, 796, 806, 889
PpuMI	RGGWCCY	1 cut(s)	523
PshAI	GACNNNNGTC	1 cut(s)	1311
Psp5II	RGGWCCY	1 cut(s)	523
Psp6I	CCWGG	4 cut(s)	907, 961, 1261, 1333
PspGI	CCWGG	4 cut(s)	907, 961, 1261, 1333
PspN4I	GGNNCC	6 cut(s)	524, 525, 537, 1383, 1412, 1441
PspPI	GGNCC	3 cut(s)	523, 798, 1142
PspPPI	RGGWCCY	1 cut(s)	523
PstI	CTGCAG	1 cut(s)	1176
PstNI	CAGNNNCTG	2 cut(s)	974, 1040
PsuI	RGATCY	1 cut(s)	341
PsyI	GACNNNGTC	2 cut(s)	527, 787
RsaI	GTAC	2 cut(s)	85, 925
RsaNI	GTAC	2 cut(s)	84, 924
RseI	CAYNNNNRTG	2 cut(s)	212, 779
SaqAI	TTAA	6 cut(s)	132, 444, 866, 882, 996, 1031
SatI	GCNGC	6 cut(s)	6, 273, 372, 732, 1122, 1172
Sau3AI	GATC	4 cut(s)	235, 341, 965, 1458
Sau96I	GGNCC	3 cut(s)	523, 798, 1142
ScaI	AGTACT	1 cut(s)	925
SchI	GAGTC	4 cut(s)	476, 797, 806, 889
ScrFI	CCNGG	5 cut(s)	909, 963, 1146, 1263, 1335
SduI	GDGCHC	1 cut(s)	361
SfaNI	GCATC	8 cut(s)	49, 157, 216, 670, 706, 817, 913, 1101
SfcI	CTRYAG	5 cut(s)	330, 561, 1115, 1172, 1429
SinI	GGWCC	2 cut(s)	523, 1142
SmiMI	CAYNNNNRTG	2 cut(s)	212, 779
Sse9I	AATT	7 cut(s)	398, 441, 548, 720, 867, 982, 1393
SsiI	CCGC	7 cut(s)	48, 289, 436, 514, 649, 1246, 1437
SspI	AATATT	1 cut(s)	145
SspMI	CTAG	1 cut(s)	383
StyD4I	CCNGG	5 cut(s)	907, 961, 1144, 1261, 1333
StyI	CCWWGG	5 cut(s)	79, 244, 630, 804, 1125
TaaI	ACNGT	7 cut(s)	18, 220, 495, 620, 1048, 1294, 1433
TaqI	TCGA	2 cut(s)	148, 714
TaqII	GACCGA	1 cut(s)	800
TasI	AATT	7 cut(s)	398, 441, 548, 720, 867, 982, 1393
TatI	WGTACW	1 cut(s)	923
TfiI	GAWTC	1 cut(s)	566
Tru1I	TTAA	6 cut(s)	132, 444, 866, 882, 996, 1031
Tru9I	TTAA	6 cut(s)	132, 444, 866, 882, 996, 1031
TscAI	CASTG	3 cut(s)	274, 1383, 1438
TseFI	GTSAC	3 cut(s)	214, 781, 809
TseI	GCWGC	6 cut(s)	5, 272, 371, 731, 1121, 1171
Tsp45I	GTSAC	3 cut(s)	214, 781, 809
TspDTI	ATGAA	6 cut(s)	55, 69, 391, 558, 951, 1351
TspRI	CASTG	3 cut(s)	274, 1383, 1438
Tth111I	GACNNNGTC	2 cut(s)	527, 787
Van91I	CCANNNNNTGG	2 cut(s)	1316, 1340
VpaK11BI	GGWCC	2 cut(s)	523, 1142
XapI	RAATTY	3 cut(s)	398, 548, 1393
XceI	RCATGY	3 cut(s)	103, 610, 878
XmiI	GTMKAC	2 cut(s)	560, 588
XspI	CTAG	1 cut(s)	383
ZrmI	AGTACT	1 cut(s)	925

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.