Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0011673

Physical Location & Seq

Genomic Coordinates Forward (+)

56120511 .. 56124634

Gene Structure 4124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG412600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

ATGGAAGTGAGGAAGGACTCCATGGCTCTTCTGCTCCTGCTTCTCCTTTTAGCTGTGTCTTCAGTGTCTGCTGCTGACGATGCTTTTGTGGGTGTAAACCTTGGTACAGACCTCTCTGACATGCCAAGTCCAACTGAGGTGGTTGCTCTTCTTAAAGCTCAAAACATTCGACATATCAGGCTCTACGATGCAGACAGAGCCATGCTCCTTGCTCTTGCAAACACAGGCATCCAAGTAACTGTTTCTGTCCCCAATGATCAGCTCCTTGGGATAGGTCAGTCCAATGCCACCGCGGCCAACTGGATTACTCGCAATGTGATAGCACATGTTCCTGCCACAAACATAACAGCTATAGCTGTCGGATCTGAAGTCCTAACTGCCCTCCCAAATGCTGCTCCAGTGCTAGTCTCTGCCCTAAAGTTCATTCACTCAGCACTTGTTGCATCTAACCTTGATCGCCAAATTAAAGTCTCTACTCCACACTCTTCCTCCATTATTCTTGACTCCTTTCCTCCTTCCCAAGCCTTCTTCAATCGCTCATGGGACAAGGTCATGGTTCCGGTGCTCAATTTTTTGCAGTCTACAGATTCATATTTCATGCTCAATGTCTATCCATACTATGATTATATGCAATCAAACGGTGTGATCCCCTTGGACTATGCACTTTTCCGCCCTCTCCCTCCAAACAAGGAAGCTGTTGATGCTAATACATTGCTGCATTATACTAATGTCTTTGATGCAATTGTTGATGCCGCGTATTTTGCAATGTCCTATCTAAACATTACAAATCTCCCCATTGTAGTGACTGAGTCAGGCTGGCCCTCCAAGGGTGACTCAGCAGAGCCAGATGCCACACTTGACAATGCTAACACTTACAATAGTAACCTAATCAAGCATGTGCTTAACAACACTGGGACTCCTAAGCATCCTGGGATTGCTGTTAGTACTTACATTTATGAGCTCTACAATGAGGATTTGAGACCTGGATCAGTCTCCGAAAAGAACTGGGGACTTTTTGATGCAAATGGGTTGCCAGTTTATACCTTACACTTGACAGGTGCTGGAACTGTGTTGGCAAACGACACAACGAACCAAACCTTTTGTGTCGCGAAGGAGGGTGCTGACAAAAAGATGCTACAGGCAGCCCTAGATTGGGCTTGTGGACCTGGAAAAGTTGATTGCTCACCTATGCTGCAAGGGAAACCTTGTTATGAACCAGACAATGTGGTGACTCATGCAACATATGCTTTCAATGCATACTTTCAGAAGATGGCCAAGTCTCCTGGGACTTGTGATTTCAAAGGGGTAGCTACTATTACTACCACAGACCCAAGTAGGAACATGTTCATGCATACTGTGTTATCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

456

Amino Acids

49.38

Weight (kDa)

5.22

Isoelectric Point (pI)

38.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	30 - 350	8.6e-78	Glycosyl hydrolases family 17
X8	PF07983	367 - 438	7.2e-20	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01630 AT2G01630 AT2G01630
fragaria_vesca	FvH4_4g33870 FvH4_4g33870
malus_domestica	MD13G1030200.v1.1 MD16G1021000.v1.1
prunus_persica	Prupe.1G331300_v2.0.a1
pyrus_communis	pycom13g01850 pycom16g01880
rosa_chinensis	RchiOBHm_Chr4g0443381
rosa_laevigata	RLG00000005934
rosa_roxburghii	Rroxscaffold_5G00383940
rosa_rugosa	Rorug04G0345800
rosa_samantha	Rh4AG401100 Rh4BG412600 Rh4CG428000 Rh4DG408100
rosa_wichuraiana	Rw4G034590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	581
AccII	CGCG	3 cut(s)	293, 755, 1109
AciI	CCGC	4 cut(s)	291, 293, 670, 753
AclWI	GGATC	3 cut(s)	370, 640, 994
AcoI	YGGCCR	2 cut(s)	294, 1272
AcuI	CTGAAG	2 cut(s)	45, 387
AfaI	GTAC	2 cut(s)	106, 946
AfiI	CCNNNNNNNGG	3 cut(s)	827, 1152, 1153
AflIII	ACRYGT	2 cut(s)	325, 1341
AgsI	TTSAA	3 cut(s)	532, 1252, 1300
AjnI	CCWGG	4 cut(s)	928, 982, 1165, 1282
AluBI	AGCT	8 cut(s)	53, 158, 262, 350, 356, 695, 961, 1310
AluI	AGCT	8 cut(s)	53, 158, 262, 350, 356, 695, 961, 1310
Alw21I	GWGCWC	2 cut(s)	567, 963
Alw26I	GTCTC	5 cut(s)	412, 475, 973, 997, 1284
AlwI	GGATC	3 cut(s)	370, 640, 994
AlwNI	CAGNNNCTG	2 cut(s)	68, 1061
AoxI	GGCC	3 cut(s)	294, 818, 1272
ApeKI	GCWGC	5 cut(s)	71, 392, 715, 1142, 1192
ArsI	GACNNNNNNTTYG	2 cut(s)	68, 100
Asp700I	GAANNNNTTC	1 cut(s)	1343
AspS9I	GGNCC	2 cut(s)	819, 1163
AsuHPI	GGTGA	3 cut(s)	842, 1176, 1240
AvaII	GGWCC	1 cut(s)	1163
BalI	TGGCCA	1 cut(s)	1274
BanII	GRGCYC	1 cut(s)	963
BbsI	GAAGAC	1 cut(s)	51
Bbv12I	GWGCWC	2 cut(s)	567, 963
BbvI	GCAGC	5 cut(s)	58, 379, 702, 1154, 1179
BccI	CCATC	1 cut(s)	1264
BciT130I	CCWGG	4 cut(s)	930, 984, 1167, 1284
BclI	TGATCA	1 cut(s)	256
BcoDI	GTCTC	5 cut(s)	412, 475, 973, 997, 1284
BfaI	CTAG	2 cut(s)	404, 1148
BfmI	CTRYAG	3 cut(s)	351, 582, 1136
BglI	GCCNNNNNGGC	1 cut(s)	293
BisI	GCNGC	7 cut(s)	72, 294, 393, 716, 753, 1143, 1193
BlsI	GCNGC	7 cut(s)	73, 295, 394, 717, 754, 1144, 1194
BmcAI	AGTACT	1 cut(s)	946
Bme1390I	CCNGG	4 cut(s)	930, 984, 1167, 1284
Bme18I	GGWCC	1 cut(s)	1163
BmgT120I	GGNCC	2 cut(s)	819, 1163
BmiI	GGNNCC	1 cut(s)	558
BmrFI	CCNGG	4 cut(s)	930, 984, 1167, 1284
BmrI	ACTGGG	2 cut(s)	921, 1015
BmuI	ACTGGG	2 cut(s)	921, 1015
BpiI	GAAGAC	1 cut(s)	51
BplI	GAGNNNNNCTC	2 cut(s)	189, 221
BpmI	CTGGAG	1 cut(s)	381
Bpu10I	CCTNAGC	1 cut(s)	921
BsaI	GGTCTC	1 cut(s)	973
BsaJI	CCNNGG	8 cut(s)	21, 100, 265, 291, 651, 825, 929, 1283
BsaWI	WCCGGW	1 cut(s)	559
BsaXI	ACNNNNNCTCC	4 cut(s)	473, 503, 901, 931
Bsc4I	CCNNNNNNNGG	3 cut(s)	827, 1152, 1153
Bse1I	ACTGG	5 cut(s)	305, 398, 916, 1010, 1034
Bse3DI	GCAATG	3 cut(s)	319, 710, 771
BseBI	CCWGG	4 cut(s)	930, 984, 1167, 1284
BseDI	CCNNGG	8 cut(s)	21, 100, 265, 291, 651, 825, 929, 1283
BseGI	GGATG	2 cut(s)	228, 925
BseLI	CCNNNNNNNGG	3 cut(s)	827, 1152, 1153
BseMI	GCAATG	3 cut(s)	319, 710, 771
BseMII	CTCAG	4 cut(s)	126, 444, 798, 849
BseNI	ACTGG	5 cut(s)	305, 398, 916, 1010, 1034
BseXI	GCAGC	5 cut(s)	58, 379, 702, 1154, 1179
Bsh1236I	CGCG	3 cut(s)	293, 755, 1109
BshFI	GGCC	3 cut(s)	296, 820, 1274
BsiHKAI	GWGCWC	2 cut(s)	567, 963
BsiSI	CCGG	1 cut(s)	560
BslFI	GGGAC	5 cut(s)	233, 557, 928, 1023, 1300
BslI	CCNNNNNNNGG	3 cut(s)	827, 1152, 1153
BsmAI	GTCTC	5 cut(s)	412, 475, 973, 997, 1284
BsmFI	GGGAC	5 cut(s)	233, 557, 928, 1023, 1300
BsnI	GGCC	3 cut(s)	296, 820, 1274
Bso31I	GGTCTC	1 cut(s)	973
Bsp1286I	GDGCHC	2 cut(s)	567, 963
Bsp143I	GATC	5 cut(s)	256, 362, 454, 645, 986
Bsp19I	CCATGG	1 cut(s)	21
Bsp68I	TCGCGA	1 cut(s)	1109
BspACI	CCGC	4 cut(s)	291, 293, 670, 753
BspANI	GGCC	3 cut(s)	296, 820, 1274
BspCNI	CTCAG	4 cut(s)	127, 443, 799, 848
BspFNI	CGCG	3 cut(s)	293, 755, 1109
BspLI	GGNNCC	1 cut(s)	558
BspPI	GGATC	3 cut(s)	370, 640, 994
BspQI	GCTCTTC	2 cut(s)	33, 153
BspTNI	GGTCTC	1 cut(s)	973
BsrDI	GCAATG	3 cut(s)	319, 710, 771
BsrI	ACTGG	5 cut(s)	305, 398, 916, 1010, 1034
BssECI	CCNNGG	8 cut(s)	21, 100, 265, 291, 651, 825, 929, 1283
BssMI	GATC	5 cut(s)	256, 362, 454, 645, 986
BssT1I	CCWWGG	5 cut(s)	21, 100, 265, 651, 825
Bst2UI	CCWGG	4 cut(s)	930, 984, 1167, 1284
Bst4CI	ACNGT	4 cut(s)	241, 641, 1069, 1357
Bst6I	CTCTTC	3 cut(s)	33, 153, 490
BstAPI	GCANNNNNTGC	2 cut(s)	440, 1244
BstC8I	GCNNGC	1 cut(s)	818
BstDEI	CTNAG	5 cut(s)	135, 430, 807, 835, 921
BstDSI	CCRYGG	2 cut(s)	21, 291
BstF5I	GGATG	2 cut(s)	228, 925
BstFNI	CGCG	3 cut(s)	293, 755, 1109
BstKTI	GATC	5 cut(s)	259, 365, 457, 648, 989
BstMAI	GTCTC	5 cut(s)	412, 475, 973, 997, 1284
BstMBI	GATC	5 cut(s)	256, 362, 454, 645, 986
BstMWI	GCNNNNNNNGC	8 cut(s)	80, 197, 293, 440, 701, 761, 1244, 1253
BstNI	CCWGG	4 cut(s)	930, 984, 1167, 1284
BstNSI	RCATGY	4 cut(s)	124, 329, 899, 1345
BstSCI	CCNGG	4 cut(s)	928, 982, 1165, 1282
BstSFI	CTRYAG	3 cut(s)	351, 582, 1136
BstUI	CGCG	3 cut(s)	293, 755, 1109
BstV1I	GCAGC	5 cut(s)	58, 379, 702, 1154, 1179
BstV2I	GAAGAC	1 cut(s)	51
BstX2I	RGATCY	1 cut(s)	362
BstYI	RGATCY	1 cut(s)	362
BsuRI	GGCC	3 cut(s)	296, 820, 1274
BtgI	CCRYGG	2 cut(s)	21, 291
BtsCI	GGATG	2 cut(s)	228, 925
BtsIMutI	CAGTG	3 cut(s)	69, 405, 909
BtuMI	TCGCGA	1 cut(s)	1109
Cac8I	GCNNGC	1 cut(s)	818
CaiI	CAGNNNCTG	2 cut(s)	68, 1061
Cfr13I	GGNCC	2 cut(s)	819, 1163
Cfr42I	CCGCGG	1 cut(s)	294
Csp6I	GTAC	2 cut(s)	105, 945
CspCI	CAANNNNNGTGG	2 cut(s)	120, 155
CviQI	GTAC	2 cut(s)	105, 945
DdeI	CTNAG	5 cut(s)	135, 430, 807, 835, 921
DpnI	GATC	5 cut(s)	258, 364, 456, 647, 988
DpnII	GATC	5 cut(s)	256, 362, 454, 645, 986
EaeI	YGGCCR	2 cut(s)	294, 1272
Eam1104I	CTCTTC	3 cut(s)	33, 153, 490
EarI	CTCTTC	3 cut(s)	33, 153, 490
EciI	GGCGGA	1 cut(s)	659
Ecl136II	GAGCTC	1 cut(s)	961
Eco130I	CCWWGG	5 cut(s)	21, 100, 265, 651, 825
Eco24I	GRGCYC	1 cut(s)	963
Eco31I	GGTCTC	1 cut(s)	973
Eco47I	GGWCC	1 cut(s)	1163
Eco53kI	GAGCTC	1 cut(s)	961
Eco57I	CTGAAG	2 cut(s)	45, 387
EcoICRI	GAGCTC	1 cut(s)	961
EcoRII	CCWGG	4 cut(s)	928, 982, 1165, 1282
EcoT14I	CCWWGG	5 cut(s)	21, 100, 265, 651, 825
EcoT22I	ATGCAT	2 cut(s)	1258, 1353
EcoT38I	GRGCYC	1 cut(s)	963
ErhI	CCWWGG	5 cut(s)	21, 100, 265, 651, 825
FaqI	GGGAC	5 cut(s)	233, 557, 928, 1023, 1300
FauNDI	CATATG	1 cut(s)	1243
FbaI	TGATCA	1 cut(s)	256
FblI	GTMKAC	1 cut(s)	581
Fnu4HI	GCNGC	7 cut(s)	72, 294, 393, 716, 753, 1143, 1193
FokI	GGATG	2 cut(s)	215, 912
FriOI	GRGCYC	1 cut(s)	963
Fsp4HI	GCNGC	7 cut(s)	72, 294, 393, 716, 753, 1143, 1193
FspBI	CTAG	2 cut(s)	404, 1148
GluI	GCNGC	7 cut(s)	72, 294, 393, 716, 753, 1143, 1193
GsuI	CTGGAG	1 cut(s)	381
HaeIII	GGCC	3 cut(s)	296, 820, 1274
HapII	CCGG	1 cut(s)	560
HinfI	GANTC	7 cut(s)	17, 503, 587, 809, 833, 916, 1231
HpaII	CCGG	1 cut(s)	560
HphI	GGTGA	3 cut(s)	842, 1176, 1240
Hpy166II	GTNNAC	3 cut(s)	97, 582, 1163
Hpy188I	TCNGA	5 cut(s)	118, 362, 367, 997, 1266
Hpy188III	TCNNGA	2 cut(s)	500, 1108
Hpy8I	GTNNAC	3 cut(s)	97, 582, 1163
HpyAV	CCTTC	4 cut(s)	7, 525, 535, 1105
HpyCH4III	ACNGT	4 cut(s)	241, 641, 1069, 1357
HpyF10VI	GCNNNNNNNGC	8 cut(s)	80, 197, 293, 440, 701, 761, 1244, 1253
HpyF3I	CTNAG	5 cut(s)	135, 430, 807, 835, 921
Ksp22I	TGATCA	1 cut(s)	256
KspI	CCGCGG	1 cut(s)	294
Kzo9I	GATC	5 cut(s)	256, 362, 454, 645, 986
LguI	GCTCTTC	2 cut(s)	33, 153
LmnI	GCTCC	4 cut(s)	39, 210, 267, 400
Lsp1109I	GCAGC	5 cut(s)	58, 379, 702, 1154, 1179
MaeI	CTAG	2 cut(s)	404, 1148
MaeIII	GTNAC	5 cut(s)	235, 802, 830, 881, 1228
MalI	GATC	5 cut(s)	258, 364, 456, 647, 988
MboI	GATC	5 cut(s)	256, 362, 454, 645, 986
MboII	GAAGA	7 cut(s)	20, 51, 140, 477, 520, 1279, 1356
MfeI	CAATTG	1 cut(s)	741
MflI	RGATCY	1 cut(s)	362
MhlI	GDGCHC	2 cut(s)	567, 963
MlsI	TGGCCA	1 cut(s)	1274
MluCI	AATT	3 cut(s)	462, 568, 741
MluNI	TGGCCA	1 cut(s)	1274
MlyI	GAGTC	6 cut(s)	11, 497, 818, 827, 910, 1225
MmeI	TCCRAC	2 cut(s)	155, 340
Mox20I	TGGCCA	1 cut(s)	1274
Mph1103I	ATGCAT	2 cut(s)	1258, 1353
MroXI	GAANNNNTTC	1 cut(s)	1343
MscI	TGGCCA	1 cut(s)	1274
MseI	TTAA	4 cut(s)	153, 465, 903, 1369
MslI	CAYNNNNRTG	2 cut(s)	800, 1346
Msp20I	TGGCCA	1 cut(s)	1274
MspA1I	CMGCKG	1 cut(s)	293
MspI	CCGG	1 cut(s)	560
MspR9I	CCNGG	4 cut(s)	930, 984, 1167, 1284
MunI	CAATTG	1 cut(s)	741
MvaI	CCWGG	4 cut(s)	930, 984, 1167, 1284
MvnI	CGCG	3 cut(s)	293, 755, 1109
MwoI	GCNNNNNNNGC	8 cut(s)	80, 197, 293, 440, 701, 761, 1244, 1253
NcoI	CCATGG	1 cut(s)	21
NdeI	CATATG	1 cut(s)	1243
NdeII	GATC	5 cut(s)	256, 362, 454, 645, 986
NlaIV	GGNNCC	1 cut(s)	558
NmuCI	GTSAC	3 cut(s)	802, 830, 1228
NruI	TCGCGA	1 cut(s)	1109
NsiI	ATGCAT	2 cut(s)	1258, 1353
NspI	RCATGY	4 cut(s)	124, 329, 899, 1345
PciI	ACATGT	2 cut(s)	325, 1341
PciSI	GCTCTTC	2 cut(s)	33, 153
PdmI	GAANNNNTTC	1 cut(s)	1343
PfeI	GAWTC	1 cut(s)	587
PflFI	GACNNNGTC	2 cut(s)	548, 808
PkrI	GCNGC	7 cut(s)	73, 295, 394, 717, 754, 1144, 1194
PleI	GAGTC	6 cut(s)	11, 497, 817, 827, 910, 1225
PpsI	GAGTC	6 cut(s)	11, 497, 817, 827, 910, 1225
PscI	ACATGT	2 cut(s)	325, 1341
Psp124BI	GAGCTC	1 cut(s)	963
Psp6I	CCWGG	4 cut(s)	928, 982, 1165, 1282
PspGI	CCWGG	4 cut(s)	928, 982, 1165, 1282
PspN4I	GGNNCC	1 cut(s)	558
PspPI	GGNCC	2 cut(s)	819, 1163
PstNI	CAGNNNCTG	2 cut(s)	68, 1061
PsuI	RGATCY	1 cut(s)	362
PsyI	GACNNNGTC	2 cut(s)	548, 808
RruI	TCGCGA	1 cut(s)	1109
RsaI	GTAC	2 cut(s)	106, 946
RsaNI	GTAC	2 cut(s)	105, 945
RseI	CAYNNNNRTG	2 cut(s)	800, 1346
SacI	GAGCTC	1 cut(s)	963
SacII	CCGCGG	1 cut(s)	294
SapI	GCTCTTC	2 cut(s)	33, 153
SaqAI	TTAA	4 cut(s)	153, 465, 903, 1369
SatI	GCNGC	7 cut(s)	72, 294, 393, 716, 753, 1143, 1193
Sau3AI	GATC	5 cut(s)	256, 362, 454, 645, 986
Sau96I	GGNCC	2 cut(s)	819, 1163
ScaI	AGTACT	1 cut(s)	946
SchI	GAGTC	6 cut(s)	11, 497, 818, 827, 910, 1225
ScrFI	CCNGG	4 cut(s)	930, 984, 1167, 1284
SduI	GDGCHC	2 cut(s)	567, 963
SfcI	CTRYAG	3 cut(s)	351, 582, 1136
Sfr303I	CCGCGG	1 cut(s)	294
SgrBI	CCGCGG	1 cut(s)	294
SinI	GGWCC	1 cut(s)	1163
SmiMI	CAYNNNNRTG	2 cut(s)	800, 1346
Sse9I	AATT	3 cut(s)	462, 568, 741
SsiI	CCGC	4 cut(s)	291, 293, 670, 753
SspMI	CTAG	2 cut(s)	404, 1148
SstI	GAGCTC	1 cut(s)	963
StyD4I	CCNGG	4 cut(s)	928, 982, 1165, 1282
StyI	CCWWGG	5 cut(s)	21, 100, 265, 651, 825
TaaI	ACNGT	4 cut(s)	241, 641, 1069, 1357
TaqI	TCGA	1 cut(s)	169
TasI	AATT	3 cut(s)	462, 568, 741
TatI	WGTACW	1 cut(s)	944
TauI	GCSGC	2 cut(s)	296, 755
TfiI	GAWTC	1 cut(s)	587
Tru1I	TTAA	4 cut(s)	153, 465, 903, 1369
Tru9I	TTAA	4 cut(s)	153, 465, 903, 1369
TscAI	CASTG	3 cut(s)	69, 405, 916
TseFI	GTSAC	3 cut(s)	802, 830, 1228
TseI	GCWGC	5 cut(s)	71, 392, 715, 1142, 1192
Tsp45I	GTSAC	3 cut(s)	802, 830, 1228
TspDTI	ATGAA	5 cut(s)	412, 579, 586, 1227, 1336
TspRI	CASTG	3 cut(s)	69, 405, 916
Tth111I	GACNNNGTC	2 cut(s)	548, 808
VpaK11BI	GGWCC	1 cut(s)	1163
XceI	RCATGY	4 cut(s)	124, 329, 899, 1345
XmiI	GTMKAC	1 cut(s)	581
XmnI	GAANNNNTTC	1 cut(s)	1343
XspI	CTAG	2 cut(s)	404, 1148
ZrmI	AGTACT	1 cut(s)	946
Zsp2I	ATGCAT	2 cut(s)	1258, 1353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.