FvH4_4g35100

IAA-amino acid hydrolase ILR1-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
32535625 .. 32538020
2396 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g35100.t1

Sequence Viewer

Length: 1326 bp
ATGGACCTCCTTCAACTCTGGTTCCTAATCTCCCTTGCCATACCATTGTGCTTTTCTCTCAACCTCCAAGCACCTACTGATCTTAAGCCTTCCACCACTTATCAGAATCACTCAGTGAAGGATGAGATAGTGAGGCTGGCAAAGGAACCCGGCACAGCAAATTGGATGAAAGATGTGAGGAGGGAAATCCATGAACACCCAGAACTAGCATATGAAGAAATCAAAACAAGTGCAGTCATTCGGAGGGAGCTTGAAAAATTAGGTGTTTCGTATAGATGGCCTGTGGCGCAGACTGGTGTTGTGGCCACTATTGGCTCTGGCTCTCCTCCCTTTGTTGCTCTAAGAGCTGATATGGATGCTCTGCCTATGCAGGAATTGGTGGAATGGGAGCACAAGAGCAAAGTGGATGGGAAATTTCATGCTTGTGGGCATGATGCACATGTTGCAATGCTACTTGGTGCTGCAAAAGTACTCAAACAAGTTGAAGATAAATTGCAGGGAACTGTTGTTCTTATATTCCAGCCGGCTGAGGAACGTGGGGAAGGCGCAAAGGACATGATCAAAGAAGGGGTACTTGACAATGTGGAGGCCATATTTGGCATTCACATTGTGAATAGGTACCCTAGCGGTGTTCTTGCGTCGAGGCCTGGAGAGTTTCTAGCTGGATGTGGGAGCTTCAAAGCAAAGATTTTTGGGAAAGGGGGTCATGCAGCCCTTCCACAACAGTCCATTGATCCAATTTTGGCAGTATCAGCATCAGTAGTCAGCTTGCAAAGCATTGTTTCTAGAGAAATAGACCCTCTAGATTCCGGGGTGGTTTCTGTAGCTATGATCCAAGGAGGGTCTGCATTTAACATCATCCCAGACTCGGCTACAATATCTGGTACTTATAGAGCTTTTAGCAAGAAGAGCTTCAATGCTCTCAGCCAAAGAATAGAAGAGGTTGTGAAAGGGCAGGCAGCTGTACATAGGTGCACTGCTGAGGTTGAATTTTTAGGGGAAGGACATCCAAACATTCCACCTACCATAAACGATGAGAGAATTTACAAACAAGCTCGAGGATTATCAAGTGAACTAGTTGGAAATGAAAACACCGAGTTAGCTCCTACCTTCATGGGGAGTGAGGATTTTGCTTTCTTCTTAGACAAGGTACCTGGATCAATGTTCTTCCTAGGCACAAGCAATGAGAAGATAGGAGCTACATACCCACCACACAGTCCTTACTATTTCATTGACGAAGATATCTTTCCAATTGGTGCTGCATTACATGCTACCTTTGCCTTTTCGTTCCTATCAGATTCGGCTGCGAAGTTAAATCTCCAATAG

Protein Analysis

442

Amino Acids

48.02

Weight (kDa)

5.51

Isoelectric Point (pI)

40.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M20 PF01546 113 - 427 3.9e-45 Peptidase family M20/M25/M40
M20_dimer PF07687 222 - 320 9.9e-10 Peptidase dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015613)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 618, 1150
AccB1I GGYRCC 2 cut(s) 618, 1150
AciI CCGC 1 cut(s) 627
AclWI GGATC 3 cut(s) 728, 826, 1165
AcoI YGGCCR 1 cut(s) 303
AcsI RAATTY 3 cut(s) 413, 989, 1041
AdeI CACNNNGTG 2 cut(s) 115, 610
AfaI GTAC 6 cut(s) 471, 573, 620, 886, 966, 1152
AfiI CCNNNNNNNGG 2 cut(s) 868, 1116
AflII CTTAAG 1 cut(s) 83
AflIII ACRYGT 1 cut(s) 439
AgsI TTSAA 6 cut(s) 14, 254, 485, 679, 916, 989
AhlI ACTAGT 1 cut(s) 1075
AjnI CCWGG 2 cut(s) 646, 1153
AloI GAACNNNNNNTCC 2 cut(s) 492, 524
Alw21I GWGCWC 2 cut(s) 393, 977
Alw44I GTGCAC 1 cut(s) 973
AlwI GGATC 3 cut(s) 728, 826, 1165
Ama87I CYCGRG 1 cut(s) 1056
AoxI GGCC 4 cut(s) 278, 303, 588, 644
ApaLI GTGCAC 1 cut(s) 973
ApeKI GCWGC 5 cut(s) 461, 710, 959, 1259, 1304
ApoI RAATTY 3 cut(s) 413, 989, 1041
Asp700I GAANNNNTTC 1 cut(s) 911
Asp718I GGTACC 2 cut(s) 618, 1150
AspA2I CCTAGG 1 cut(s) 1171
AspLEI GCGC 2 cut(s) 289, 548
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 2 cut(s) 150, 811
AvaI CYCGRG 1 cut(s) 1056
AvaII GGWCC 1 cut(s) 4
AvrII CCTAGG 1 cut(s) 1171
BaeGI GKGCMC 1 cut(s) 977
BalI TGGCCA 1 cut(s) 305
BanI GGYRCC 2 cut(s) 618, 1150
Bbv12I GWGCWC 2 cut(s) 393, 977
BbvCI CCTCAGC 2 cut(s) 528, 981
BbvI GCAGC 5 cut(s) 448, 722, 971, 1246, 1291
BccI CCATC 2 cut(s) 270, 401
BciT130I CCWGG 2 cut(s) 648, 1155
BclI TGATCA 1 cut(s) 558
BcnI CCSGG 2 cut(s) 150, 811
BcuI ACTAGT 1 cut(s) 1075
BfaI CTAG 7 cut(s) 206, 624, 659, 786, 803, 1076, 1172
BfmI CTRYAG 1 cut(s) 822
BfrI CTTAAG 1 cut(s) 83
BisI GCNGC 5 cut(s) 462, 711, 960, 1260, 1305
BlnI CCTAGG 1 cut(s) 1171
BlsI GCNGC 5 cut(s) 463, 712, 961, 1261, 1306
BmcAI AGTACT 1 cut(s) 471
Bme1390I CCNGG 4 cut(s) 150, 648, 811, 1155
Bme18I GGWCC 1 cut(s) 4
BmeT110I CYCGRG 1 cut(s) 1056
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 4 cut(s) 23, 147, 620, 1152
BmrFI CCNGG 4 cut(s) 150, 648, 811, 1155
BmsI GCATC 3 cut(s) 346, 424, 764
BpmI CTGGAG 1 cut(s) 669
Bpu10I CCTNAGC 2 cut(s) 528, 981
BpuMI CCSGG 2 cut(s) 150, 811
BsaJI CCNNGG 3 cut(s) 810, 835, 1171
Bsc4I CCNNNNNNNGG 2 cut(s) 868, 1116
Bse118I RCCGGY 1 cut(s) 523
Bse1I ACTGG 1 cut(s) 298
Bse3DI GCAATG 2 cut(s) 453, 1189
BseBI CCWGG 2 cut(s) 648, 1155
BseDI CCNNGG 3 cut(s) 810, 835, 1171
BseGI GGATG 7 cut(s) 127, 171, 361, 412, 671, 858, 1006
BseLI CCNNNNNNNGG 2 cut(s) 868, 1116
BseMI GCAATG 2 cut(s) 453, 1189
BseMII CTCAG 4 cut(s) 126, 519, 937, 972
BseNI ACTGG 1 cut(s) 298
BseRI GAGGAG 2 cut(s) 193, 315
BseSI GKGCMC 1 cut(s) 977
BseXI GCAGC 5 cut(s) 448, 722, 971, 1246, 1291
BsgI GTGCAG 1 cut(s) 252
BshFI GGCC 4 cut(s) 280, 305, 590, 646
BshNI GGYRCC 2 cut(s) 618, 1150
BsiHKAI GWGCWC 2 cut(s) 393, 977
BsiHKCI CYCGRG 1 cut(s) 1056
BsiSI CCGG 3 cut(s) 150, 524, 810
BslI CCNNNNNNNGG 2 cut(s) 868, 1116
BsmI GAATGC 1 cut(s) 600
BsnI GGCC 4 cut(s) 280, 305, 590, 646
BsoBI CYCGRG 1 cut(s) 1056
Bsp1286I GDGCHC 2 cut(s) 393, 977
Bsp1407I TGTACA 1 cut(s) 964
Bsp143I GATC 5 cut(s) 79, 558, 733, 831, 1157
BspACI CCGC 1 cut(s) 627
BspANI GGCC 4 cut(s) 280, 305, 590, 646
BspCNI CTCAG 4 cut(s) 125, 520, 936, 973
BspLI GGNNCC 4 cut(s) 23, 147, 620, 1152
BspPI GGATC 3 cut(s) 728, 826, 1165
BspQI GCTCTTC 1 cut(s) 902
BspT107I GGYRCC 2 cut(s) 618, 1150
BspTI CTTAAG 1 cut(s) 83
BsrDI GCAATG 2 cut(s) 453, 1189
BsrFI RCCGGY 1 cut(s) 523
BsrGI TGTACA 1 cut(s) 964
BsrI ACTGG 1 cut(s) 298
BssAI RCCGGY 1 cut(s) 523
BssECI CCNNGG 3 cut(s) 810, 835, 1171
BssMI GATC 5 cut(s) 79, 558, 733, 831, 1157
BssT1I CCWWGG 2 cut(s) 835, 1171
Bst2UI CCWGG 2 cut(s) 648, 1155
Bst4CI ACNGT 3 cut(s) 505, 726, 1217
Bst6I CTCTTC 2 cut(s) 902, 933
BstAFI CTTAAG 1 cut(s) 83
BstAPI GCANNNNNTGC 2 cut(s) 443, 1268
BstAUI TGTACA 1 cut(s) 964
BstC8I GCNNGC 4 cut(s) 138, 525, 770, 957
BstDEI CTNAG 6 cut(s) 112, 341, 528, 923, 981, 1141
BstF5I GGATG 7 cut(s) 127, 171, 361, 412, 671, 858, 1006
BstHHI GCGC 2 cut(s) 289, 548
BstKTI GATC 5 cut(s) 82, 561, 736, 834, 1160
BstMBI GATC 5 cut(s) 79, 558, 733, 831, 1157
BstMWI GCNNNNNNNGC 8 cut(s) 286, 344, 443, 752, 774, 909, 1268, 1277
BstNI CCWGG 2 cut(s) 648, 1155
BstNSI RCATGY 2 cut(s) 443, 1271
BstSCI CCNGG 4 cut(s) 148, 646, 809, 1153
BstSFI CTRYAG 1 cut(s) 822
BstSLI GKGCMC 1 cut(s) 977
BstV1I GCAGC 5 cut(s) 448, 722, 971, 1246, 1291
BsuRI GGCC 4 cut(s) 280, 305, 590, 646
BtsCI GGATG 7 cut(s) 127, 171, 361, 412, 671, 858, 1006
BtsI GCAGTG 1 cut(s) 975
BtsIMutI CAGTG 2 cut(s) 120, 975
Cac8I GCNNGC 4 cut(s) 138, 525, 770, 957
CfoI GCGC 2 cut(s) 289, 548
Cfr10I RCCGGY 1 cut(s) 523
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 1 cut(s) 627
Csp6I GTAC 6 cut(s) 470, 572, 619, 885, 965, 1151
CviAII CATG 8 cut(s) 191, 419, 431, 440, 556, 707, 1114, 1268
CviQI GTAC 6 cut(s) 470, 572, 619, 885, 965, 1151
DdeI CTNAG 6 cut(s) 112, 341, 528, 923, 981, 1141
DpnI GATC 5 cut(s) 81, 560, 735, 833, 1159
DpnII GATC 5 cut(s) 79, 558, 733, 831, 1157
DraIII CACNNNGTG 2 cut(s) 115, 610
EaeI YGGCCR 1 cut(s) 303
Eam1104I CTCTTC 2 cut(s) 902, 933
EarI CTCTTC 2 cut(s) 902, 933
Eco130I CCWWGG 2 cut(s) 835, 1171
Eco147I AGGCCT 1 cut(s) 646
Eco32I GATATC 1 cut(s) 1243
Eco47I GGWCC 1 cut(s) 4
Eco88I CYCGRG 1 cut(s) 1056
EcoRII CCWGG 2 cut(s) 646, 1153
EcoRV GATATC 1 cut(s) 1243
EcoT14I CCWWGG 2 cut(s) 835, 1171
ErhI CCWWGG 2 cut(s) 835, 1171
FaeI CATG 8 cut(s) 194, 422, 434, 443, 559, 710, 1117, 1271
FalI AAGNNNNNCTT 4 cut(s) 558, 590, 896, 928
FatI CATG 8 cut(s) 190, 418, 430, 439, 555, 706, 1113, 1267
FauNDI CATATG 1 cut(s) 211
FbaI TGATCA 1 cut(s) 558
Fnu4HI GCNGC 5 cut(s) 462, 711, 960, 1260, 1305
FokI GGATG 7 cut(s) 134, 178, 368, 419, 678, 845, 993
Fsp4HI GCNGC 5 cut(s) 462, 711, 960, 1260, 1305
FspBI CTAG 7 cut(s) 206, 624, 659, 786, 803, 1076, 1172
GlaI GCGC 2 cut(s) 288, 547
GluI GCNGC 5 cut(s) 462, 711, 960, 1260, 1305
GsuI CTGGAG 1 cut(s) 669
HaeIII GGCC 4 cut(s) 280, 305, 590, 646
HapII CCGG 3 cut(s) 150, 524, 810
HgaI GACGC 1 cut(s) 627
HhaI GCGC 2 cut(s) 289, 548
Hin1II CATG 8 cut(s) 194, 422, 434, 443, 559, 710, 1117, 1271
Hin6I GCGC 2 cut(s) 287, 546
HinP1I GCGC 2 cut(s) 287, 546
HinfI GANTC 4 cut(s) 106, 806, 866, 1298
HpaII CCGG 3 cut(s) 150, 524, 810
Hpy166II GTNNAC 2 cut(s) 975, 1073
Hpy188I TCNGA 3 cut(s) 105, 243, 1297
Hpy188III TCNNGA 2 cut(s) 786, 803
Hpy8I GTNNAC 2 cut(s) 975, 1073
Hpy99I CGWCG 1 cut(s) 643
HpyAV CCTTC 8 cut(s) 20, 99, 112, 536, 560, 725, 995, 1120
HpyCH4III ACNGT 3 cut(s) 505, 726, 1217
HpyCH4IV ACGT 1 cut(s) 535
HpyF10VI GCNNNNNNNGC 8 cut(s) 286, 344, 443, 752, 774, 909, 1268, 1277
HpyF3I CTNAG 6 cut(s) 112, 341, 528, 923, 981, 1141
HpySE526I ACGT 1 cut(s) 535
Hsp92II CATG 8 cut(s) 194, 422, 434, 443, 559, 710, 1117, 1271
HspAI GCGC 2 cut(s) 287, 546
KpnI GGTACC 2 cut(s) 622, 1154
KroI GCCGGC 1 cut(s) 523
KroNI GCCGGC 1 cut(s) 525
Ksp22I TGATCA 1 cut(s) 558
Kzo9I GATC 5 cut(s) 79, 558, 733, 831, 1157
LguI GCTCTTC 1 cut(s) 902
LmnI GCTCC 5 cut(s) 247, 388, 672, 1108, 1196
Lsp1109I GCAGC 5 cut(s) 448, 722, 971, 1246, 1291
LweI GCATC 3 cut(s) 346, 424, 764
MaeI CTAG 7 cut(s) 206, 624, 659, 786, 803, 1076, 1172
MaeII ACGT 1 cut(s) 535
MalI GATC 5 cut(s) 81, 560, 735, 833, 1159
MboI GATC 5 cut(s) 79, 558, 733, 831, 1157
MboII GAAGA 8 cut(s) 227, 497, 919, 950, 1129, 1159, 1201, 1250
MfeI CAATTG 1 cut(s) 1251
MhlI GDGCHC 2 cut(s) 393, 977
MlsI TGGCCA 1 cut(s) 305
MluCI AATT 9 cut(s) 160, 257, 374, 413, 491, 738, 989, 1041, 1251
MluNI TGGCCA 1 cut(s) 305
MlyI GAGTC 1 cut(s) 860
MmeI TCCRAC 1 cut(s) 1060
Mox20I TGGCCA 1 cut(s) 305
MroNI GCCGGC 1 cut(s) 523
MroXI GAANNNNTTC 1 cut(s) 911
MscI TGGCCA 1 cut(s) 305
MseI TTAA 3 cut(s) 84, 852, 1313
MslI CAYNNNNRTG 1 cut(s) 423
Msp20I TGGCCA 1 cut(s) 305
MspA1I CMGCKG 1 cut(s) 962
MspCI CTTAAG 1 cut(s) 83
MspI CCGG 3 cut(s) 150, 524, 810
MspR9I CCNGG 4 cut(s) 150, 648, 811, 1155
MunI CAATTG 1 cut(s) 1251
Mva1269I GAATGC 1 cut(s) 600
MvaI CCWGG 2 cut(s) 648, 1155
MwoI GCNNNNNNNGC 8 cut(s) 286, 344, 443, 752, 774, 909, 1268, 1277
NaeI GCCGGC 1 cut(s) 525
NciI CCSGG 2 cut(s) 150, 811
NdeI CATATG 1 cut(s) 211
NdeII GATC 5 cut(s) 79, 558, 733, 831, 1157
NgoMIV GCCGGC 1 cut(s) 523
NlaIII CATG 8 cut(s) 194, 422, 434, 443, 559, 710, 1117, 1271
NlaIV GGNNCC 4 cut(s) 23, 147, 620, 1152
NmeAIII GCCGAG 1 cut(s) 848
NspI RCATGY 2 cut(s) 443, 1271
PaeR7I CTCGAG 1 cut(s) 1056
PceI AGGCCT 1 cut(s) 646
PciI ACATGT 1 cut(s) 439
PciSI GCTCTTC 1 cut(s) 902
PctI GAATGC 1 cut(s) 600
PdiI GCCGGC 1 cut(s) 525
PdmI GAANNNNTTC 1 cut(s) 911
PfeI GAWTC 3 cut(s) 106, 806, 1298
PkrI GCNGC 5 cut(s) 463, 712, 961, 1261, 1306
PleI GAGTC 1 cut(s) 860
PpsI GAGTC 1 cut(s) 860
PscI ACATGT 1 cut(s) 439
Psp6I CCWGG 2 cut(s) 646, 1153
PspGI CCWGG 2 cut(s) 646, 1153
PspN4I GGNNCC 4 cut(s) 23, 147, 620, 1152
PspPI GGNCC 1 cut(s) 4
PspXI VCTCGAGB 1 cut(s) 1056
PvuII CAGCTG 1 cut(s) 962
RsaI GTAC 6 cut(s) 471, 573, 620, 886, 966, 1152
RsaNI GTAC 6 cut(s) 470, 572, 619, 885, 965, 1151
RseI CAYNNNNRTG 1 cut(s) 423
SapI GCTCTTC 1 cut(s) 902
SaqAI TTAA 3 cut(s) 84, 852, 1313
SatI GCNGC 5 cut(s) 462, 711, 960, 1260, 1305
Sau3AI GATC 5 cut(s) 79, 558, 733, 831, 1157
Sau96I GGNCC 1 cut(s) 4
ScaI AGTACT 1 cut(s) 471
SchI GAGTC 1 cut(s) 860
ScrFI CCNGG 4 cut(s) 150, 648, 811, 1155
SduI GDGCHC 2 cut(s) 393, 977
SfaNI GCATC 3 cut(s) 346, 424, 764
SfcI CTRYAG 1 cut(s) 822
Sfr274I CTCGAG 1 cut(s) 1056
SinI GGWCC 1 cut(s) 4
SlaI CTCGAG 1 cut(s) 1056
SmiMI CAYNNNNRTG 1 cut(s) 423
SmlI CTYRAG 2 cut(s) 83, 1056
SmoI CTYRAG 2 cut(s) 83, 1056
SpeI ACTAGT 1 cut(s) 1075
Sse9I AATT 9 cut(s) 160, 257, 374, 413, 491, 738, 989, 1041, 1251
SseBI AGGCCT 1 cut(s) 646
SsiI CCGC 1 cut(s) 627
SspMI CTAG 7 cut(s) 206, 624, 659, 786, 803, 1076, 1172
StuI AGGCCT 1 cut(s) 646
StyD4I CCNGG 4 cut(s) 148, 646, 809, 1153
StyI CCWWGG 2 cut(s) 835, 1171
TaaI ACNGT 3 cut(s) 505, 726, 1217
TaiI ACGT 1 cut(s) 538
TaqI TCGA 2 cut(s) 641, 1057
TasI AATT 9 cut(s) 160, 257, 374, 413, 491, 738, 989, 1041, 1251
TatI WGTACW 2 cut(s) 469, 964
TfiI GAWTC 3 cut(s) 106, 806, 1298
Tru1I TTAA 3 cut(s) 84, 852, 1313
Tru9I TTAA 3 cut(s) 84, 852, 1313
TscAI CASTG 2 cut(s) 120, 982
TseI GCWGC 5 cut(s) 461, 710, 959, 1259, 1304
TspDTI ATGAA 7 cut(s) 182, 207, 228, 407, 1101, 1102, 1219
TspRI CASTG 2 cut(s) 120, 982
Vha464I CTTAAG 1 cut(s) 83
VneI GTGCAC 1 cut(s) 973
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 3 cut(s) 413, 989, 1041
XbaI TCTAGA 2 cut(s) 785, 802
XceI RCATGY 2 cut(s) 443, 1271
XhoI CTCGAG 1 cut(s) 1056
XmaJI CCTAGG 1 cut(s) 1171
XmnI GAANNNNTTC 1 cut(s) 911
XspI CTAG 7 cut(s) 206, 624, 659, 786, 803, 1076, 1172
ZrmI AGTACT 1 cut(s) 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.