MD13G1086300.v1.1

IAA-amino acid hydrolase ILR1-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Forward (+)
6072850 .. 6075128
2279 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1086300.v1.1.491

Sequence Viewer

Length: 1347 bp
ATGGACTTTCTTCTTCTGCAACTTTTGTTCCTAATAATCTCCATCGCCATGCCCTTGTGCTTTTCTCTGAAACTCCAAAGTAACCCAACCGATCATCTCAACTCGTTCTCCACATATCAGACTTATTCAGTGAAAGACCAGATAGTTAGGCTGGCCAATGAACCCAGCACAGTGAATTGGATGAAAAGTGTGAGGAGGGAAATGCATGAGAACCCAGAACTTTCATATGAAGAATTCGAAACAAGTGCACTCATTCGCCGGGAGCTCGAAAAACTCGGTGTTGCTTATAAATGGCCTGTGGCTAAAACTGGCGTTGTAGCCACGATTGGCTCTGGCTCTCCTCCCTTTGTTGCTCTGAGAGCTGATATGGATGCTTTGCCTATTGAGGAAATGGTGGACTGGGAGAACAAGAGCAAAGTGGAGGGAAAAATGCATGCTTGCGGCCACGACGGCCACGTCGCCATGCTTCTTGGCGCTGCAAAAATACTAAAACAACTGCAAGACACATTACAGGGAACTGTTGTACTTATATTTCAACCGGCTGAGGAACGCGGTGTAGGCGCAAAGGACATGATTGAAGAAGGGGTGCTTGATAATGTGGAGGCAGTTTTTGGGATGCACATAGTGCTTGATTATCCGACTGGCGTTGTTGGATTGAGGCCTGGAGAATTTCTAGCCGGTTGTGGGAGCTTCAAGGCGAAAATTCACGGGAAAGGGGGTCATGCAGCAATTCCTCAGCAATCCATTGATCCGATTTTGGCAGCATCAACATCTGTAATCAGTTTGCAGAGCATCGTCTCGAGGGAAACAGACCCTCTAGATTCCCAGGTGGTTTCTGTTTCTGTGATTAAAGCGGGGTCTTCCTTTAATGTCATCCCGGAATCAGCTACAATTTCTGGTACTTTTAGAGCTTTTAGCAAGAAGAACTTCAAGGGACTCATGAATAGAATCGAAGAGGTTGTAAAAGGGCAGGCAGCCGTGCACCGGTGCTCCGCTGAGGTCGAGTTTTTAGGGAAGGAACATCCTACCATCCCTCCTACTGTAAACGACGAGAGAATTTATGAACAAGTAAGGGGAATCTCGAGCGAAATAGTAGGAGAAGAAAACATACAACTAGCTCATACCTCCATGGGGAGTGAGGATTTTGCTTTTTACTTAGACAAGGTGCCTGGATTCATGCTGTTTTTAGGCACAAGAAATGAGAAGATAGGAGCCATACATGCACCACATAGTCCTAACTACATCATCGATGAGGATGTGTTTCCCATTGGGGCTGCCATACATGCAGCTTTTGCCCATTCTTTCCTATCAGATTCAACTGTAAAGTTGCACCTTCATAATTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

449

Amino Acids

49.05

Weight (kDa)

5.58

Isoelectric Point (pI)

44.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M20 PF01546 118 - 432 1.3e-46 Peptidase family M20/M25/M40
M20_dimer PF07687 227 - 325 4.3e-12 Peptidase dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015613)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 288
AasI GACNNNNNNGTC 1 cut(s) 455
AccB1I GGYRCC 1 cut(s) 1165
AccII CGCG 1 cut(s) 552
AciI CCGC 4 cut(s) 441, 552, 854, 993
AclWI GGATC 1 cut(s) 743
AcoI YGGCCR 3 cut(s) 153, 442, 451
AcsI RAATTY 4 cut(s) 233, 668, 702, 1056
AdeI CACNNNGTG 1 cut(s) 625
AfaI GTAC 2 cut(s) 525, 901
AfiI CCNNNNNNNGG 3 cut(s) 684, 984, 1131
AgeI ACCGGT 1 cut(s) 984
AgsI TTSAA 5 cut(s) 536, 578, 694, 931, 1317
AjiI CACGTC 1 cut(s) 457
AjnI CCWGG 3 cut(s) 661, 825, 1168
AluBI AGCT 7 cut(s) 265, 362, 690, 887, 911, 1118, 1289
AluI AGCT 7 cut(s) 265, 362, 690, 887, 911, 1118, 1289
Alw21I GWGCWC 4 cut(s) 250, 267, 984, 992
Alw26I GTCTC 1 cut(s) 802
Alw44I GTGCAC 2 cut(s) 246, 980
AlwI GGATC 1 cut(s) 743
Ama87I CYCGRG 2 cut(s) 799, 1081
AoxI GGCC 5 cut(s) 153, 293, 442, 451, 659
ApaLI GTGCAC 2 cut(s) 246, 980
ApeKI GCWGC 6 cut(s) 476, 725, 761, 974, 1274, 1286
ApoI RAATTY 4 cut(s) 233, 668, 702, 1056
AsiGI ACCGGT 1 cut(s) 984
Asp700I GAANNNNTTC 1 cut(s) 926
AspLEI GCGC 2 cut(s) 476, 563
AsuC2I CCSGG 2 cut(s) 260, 878
AsuII TTCGAA 1 cut(s) 237
AvaI CYCGRG 2 cut(s) 799, 1081
BaeGI GKGCMC 2 cut(s) 250, 984
BalI TGGCCA 1 cut(s) 155
BanI GGYRCC 1 cut(s) 1165
BanII GRGCYC 1 cut(s) 267
BarI GAAGNNNNNNTAC 2 cut(s) 1092, 1124
BbsI GAAGAC 1 cut(s) 852
Bbv12I GWGCWC 4 cut(s) 250, 267, 984, 992
BbvCI CCTCAGC 3 cut(s) 543, 735, 996
BbvI GCAGC 6 cut(s) 463, 737, 773, 986, 1261, 1298
BccI CCATC 2 cut(s) 50, 1037
BceAI ACGGC 2 cut(s) 466, 962
BcgI CGANNNNNNTGC 2 cut(s) 227, 261
BciT130I CCWGG 3 cut(s) 663, 827, 1170
BcnI CCSGG 2 cut(s) 260, 878
BcoDI GTCTC 1 cut(s) 802
BfaI CTAG 3 cut(s) 674, 818, 1115
BfoI RGCGCY 1 cut(s) 477
BglI GCCNNNNNGGC 1 cut(s) 450
BisI GCNGC 7 cut(s) 442, 477, 726, 762, 975, 1275, 1287
BlsI GCNGC 7 cut(s) 443, 478, 727, 763, 976, 1276, 1288
Bme1390I CCNGG 5 cut(s) 260, 663, 827, 878, 1170
BmeT110I CYCGRG 2 cut(s) 799, 1081
BmgBI CACGTC 1 cut(s) 457
BmiI GGNNCC 2 cut(s) 1167, 1213
BmrFI CCNGG 5 cut(s) 260, 663, 827, 878, 1170
BmrI ACTGGG 1 cut(s) 409
BmsI GCATC 4 cut(s) 361, 606, 773, 801
BmuI ACTGGG 1 cut(s) 409
BpiI GAAGAC 1 cut(s) 852
BpmI CTGGAG 1 cut(s) 684
Bpu10I CCTNAGC 3 cut(s) 543, 735, 996
Bpu14I TTCGAA 1 cut(s) 237
BpuMI CCSGG 2 cut(s) 260, 878
Bsa29I ATCGAT 1 cut(s) 1248
BsaJI CCNNGG 2 cut(s) 825, 1128
BsaWI WCCGGW 1 cut(s) 984
BsaXI ACNNNNNCTCC 6 cut(s) 92, 122, 974, 1004, 1018, 1048
Bsc4I CCNNNNNNNGG 3 cut(s) 684, 984, 1131
Bse118I RCCGGY 3 cut(s) 538, 677, 984
Bse1I ACTGG 3 cut(s) 313, 404, 646
BseBI CCWGG 3 cut(s) 663, 827, 1170
BseCI ATCGAT 1 cut(s) 1248
BseDI CCNNGG 2 cut(s) 825, 1128
BseGI GGATG 7 cut(s) 186, 376, 621, 873, 1021, 1029, 1261
BseLI CCNNNNNNNGG 3 cut(s) 684, 984, 1131
BseMII CTCAG 4 cut(s) 347, 534, 749, 987
BseNI ACTGG 3 cut(s) 313, 404, 646
BseRI GAGGAG 2 cut(s) 208, 330
BseSI GKGCMC 2 cut(s) 250, 984
BseXI GCAGC 6 cut(s) 463, 737, 773, 986, 1261, 1298
BseYI CCCAGC 1 cut(s) 164
Bsh1236I CGCG 1 cut(s) 552
BshFI GGCC 5 cut(s) 155, 295, 444, 453, 661
BshNI GGYRCC 1 cut(s) 1165
BshTI ACCGGT 1 cut(s) 984
BshVI ATCGAT 1 cut(s) 1248
BsiHKAI GWGCWC 4 cut(s) 250, 267, 984, 992
BsiHKCI CYCGRG 2 cut(s) 799, 1081
BsiSI CCGG 5 cut(s) 259, 539, 678, 878, 985
BslFI GGGAC 1 cut(s) 948
BslI CCNNNNNNNGG 3 cut(s) 684, 984, 1131
BsmAI GTCTC 1 cut(s) 802
BsmBI CGTCTC 1 cut(s) 802
BsmFI GGGAC 1 cut(s) 948
BsnI GGCC 5 cut(s) 155, 295, 444, 453, 661
BsoBI CYCGRG 2 cut(s) 799, 1081
Bsp119I TTCGAA 1 cut(s) 237
Bsp1286I GDGCHC 4 cut(s) 250, 267, 984, 992
Bsp143I GATC 2 cut(s) 91, 748
Bsp19I CCATGG 1 cut(s) 1128
BspACI CCGC 4 cut(s) 441, 552, 854, 993
BspANI GGCC 5 cut(s) 155, 295, 444, 453, 661
BspCNI CTCAG 4 cut(s) 348, 535, 748, 988
BspDI ATCGAT 1 cut(s) 1248
BspFNI CGCG 1 cut(s) 552
BspHI TCATGA 1 cut(s) 939
BspLI GGNNCC 2 cut(s) 1167, 1213
BspPI GGATC 1 cut(s) 743
BspT104I TTCGAA 1 cut(s) 237
BspT107I GGYRCC 1 cut(s) 1165
BsrFI RCCGGY 3 cut(s) 538, 677, 984
BsrI ACTGG 3 cut(s) 313, 404, 646
BssAI RCCGGY 3 cut(s) 538, 677, 984
BssECI CCNNGG 2 cut(s) 825, 1128
BssMI GATC 2 cut(s) 91, 748
BssT1I CCWWGG 1 cut(s) 1128
Bst2UI CCWGG 3 cut(s) 663, 827, 1170
Bst4CI ACNGT 4 cut(s) 172, 520, 1042, 1321
Bst6I CTCTTC 1 cut(s) 948
BstAPI GCANNNNNTGC 2 cut(s) 625, 1292
BstBI TTCGAA 1 cut(s) 237
BstC8I GCNNGC 4 cut(s) 153, 435, 439, 972
BstDEI CTNAG 5 cut(s) 356, 543, 735, 996, 1156
BstDSI CCRYGG 1 cut(s) 1128
BstF5I GGATG 7 cut(s) 186, 376, 621, 873, 1021, 1029, 1261
BstFNI CGCG 1 cut(s) 552
BstH2I RGCGCY 1 cut(s) 477
BstHHI GCGC 2 cut(s) 476, 563
BstKTI GATC 2 cut(s) 94, 751
BstMAI GTCTC 1 cut(s) 802
BstMBI GATC 2 cut(s) 91, 748
BstMWI GCNNNNNNNGC 7 cut(s) 359, 450, 558, 625, 1220, 1283, 1292
BstNI CCWGG 3 cut(s) 663, 827, 1170
BstNSI RCATGY 3 cut(s) 437, 1223, 1286
BstSCI CCNGG 5 cut(s) 258, 661, 825, 876, 1168
BstSLI GKGCMC 2 cut(s) 250, 984
BstUI CGCG 1 cut(s) 552
BstV1I GCAGC 6 cut(s) 463, 737, 773, 986, 1261, 1298
BstV2I GAAGAC 1 cut(s) 852
Bsu15I ATCGAT 1 cut(s) 1248
BsuRI GGCC 5 cut(s) 155, 295, 444, 453, 661
BsuTUI ATCGAT 1 cut(s) 1248
BtgI CCRYGG 1 cut(s) 1128
BtgZI GCGATG 1 cut(s) 28
BtrI CACGTC 1 cut(s) 457
BtsCI GGATG 7 cut(s) 186, 376, 621, 873, 1021, 1029, 1261
BtsIMutI CAGTG 2 cut(s) 135, 177
Cac8I GCNNGC 4 cut(s) 153, 435, 439, 972
CciI TCATGA 1 cut(s) 939
CfoI GCGC 2 cut(s) 476, 563
Cfr10I RCCGGY 3 cut(s) 538, 677, 984
ClaI ATCGAT 1 cut(s) 1248
Csp6I GTAC 2 cut(s) 524, 900
CspAI ACCGGT 1 cut(s) 984
CviQI GTAC 2 cut(s) 524, 900
DdeI CTNAG 5 cut(s) 356, 543, 735, 996, 1156
DpnI GATC 2 cut(s) 93, 750
DpnII GATC 2 cut(s) 91, 748
DraIII CACNNNGTG 1 cut(s) 625
DrdI GACNNNNNNGTC 1 cut(s) 455
DseDI GACNNNNNNGTC 1 cut(s) 455
EaeI YGGCCR 3 cut(s) 153, 442, 451
Eam1104I CTCTTC 1 cut(s) 948
EarI CTCTTC 1 cut(s) 948
Ecl136II GAGCTC 1 cut(s) 265
Eco130I CCWWGG 1 cut(s) 1128
Eco147I AGGCCT 1 cut(s) 661
Eco24I GRGCYC 1 cut(s) 267
Eco53kI GAGCTC 1 cut(s) 265
Eco88I CYCGRG 2 cut(s) 799, 1081
EcoICRI GAGCTC 1 cut(s) 265
EcoRI GAATTC 1 cut(s) 233
EcoRII CCWGG 3 cut(s) 661, 825, 1168
EcoT14I CCWWGG 1 cut(s) 1128
EcoT22I ATGCAT 2 cut(s) 207, 435
EcoT38I GRGCYC 1 cut(s) 267
ErhI CCWWGG 1 cut(s) 1128
Esp3I CGTCTC 1 cut(s) 802
FalI AAGNNNNNCTT 4 cut(s) 573, 605, 911, 943
FaqI GGGAC 1 cut(s) 948
FauI CCCGC 1 cut(s) 847
FauNDI CATATG 1 cut(s) 226
Fnu4HI GCNGC 7 cut(s) 442, 477, 726, 762, 975, 1275, 1287
FokI GGATG 7 cut(s) 193, 383, 628, 860, 1008, 1016, 1268
FriOI GRGCYC 1 cut(s) 267
Fsp4HI GCNGC 7 cut(s) 442, 477, 726, 762, 975, 1275, 1287
FspBI CTAG 3 cut(s) 674, 818, 1115
GlaI GCGC 2 cut(s) 475, 562
GluI GCNGC 7 cut(s) 442, 477, 726, 762, 975, 1275, 1287
GsaI CCCAGC 1 cut(s) 168
GsuI CTGGAG 1 cut(s) 684
HaeII RGCGCY 1 cut(s) 477
HaeIII GGCC 5 cut(s) 155, 295, 444, 453, 661
HapII CCGG 5 cut(s) 259, 539, 678, 878, 985
HhaI GCGC 2 cut(s) 476, 563
Hin6I GCGC 2 cut(s) 474, 561
HinP1I GCGC 2 cut(s) 474, 561
HinfI GANTC 7 cut(s) 821, 881, 936, 948, 1077, 1173, 1313
HpaII CCGG 5 cut(s) 259, 539, 678, 878, 985
Hpy166II GTNNAC 4 cut(s) 248, 397, 982, 1045
Hpy188I TCNGA 7 cut(s) 69, 120, 357, 639, 753, 1312, 1346
Hpy188III TCNNGA 4 cut(s) 799, 818, 940, 1081
Hpy8I GTNNAC 4 cut(s) 248, 397, 982, 1045
Hpy99I CGWCG 3 cut(s) 452, 461, 1052
HpyAV CCTTC 3 cut(s) 575, 1009, 1343
HpyCH4III ACNGT 4 cut(s) 172, 520, 1042, 1321
HpyCH4IV ACGT 1 cut(s) 456
HpyF10VI GCNNNNNNNGC 7 cut(s) 359, 450, 558, 625, 1220, 1283, 1292
HpyF3I CTNAG 5 cut(s) 356, 543, 735, 996, 1156
HpySE526I ACGT 1 cut(s) 456
HspAI GCGC 2 cut(s) 474, 561
Kzo9I GATC 2 cut(s) 91, 748
LmnI GCTCC 4 cut(s) 262, 687, 995, 1211
Lsp1109I GCAGC 6 cut(s) 463, 737, 773, 986, 1261, 1298
LweI GCATC 4 cut(s) 361, 606, 773, 801
MaeI CTAG 3 cut(s) 674, 818, 1115
MaeII ACGT 1 cut(s) 456
MaeIII GTNAC 1 cut(s) 80
MalI GATC 2 cut(s) 93, 750
MboI GATC 2 cut(s) 91, 748
MboII GAAGA 8 cut(s) 5, 242, 590, 852, 934, 965, 1112, 1216
MhlI GDGCHC 4 cut(s) 250, 267, 984, 992
MlsI TGGCCA 1 cut(s) 155
MluCI AATT 8 cut(s) 175, 233, 668, 702, 729, 891, 1056, 1339
MluNI TGGCCA 1 cut(s) 155
MlyI GAGTC 1 cut(s) 930
MmeI TCCRAC 2 cut(s) 631, 662
Mox20I TGGCCA 1 cut(s) 155
Mph1103I ATGCAT 2 cut(s) 207, 435
MroXI GAANNNNTTC 1 cut(s) 926
MscI TGGCCA 1 cut(s) 155
MseI TTAA 2 cut(s) 849, 867
MslI CAYNNNNRTG 1 cut(s) 47
Msp20I TGGCCA 1 cut(s) 155
MspA1I CMGCKG 1 cut(s) 995
MspI CCGG 5 cut(s) 259, 539, 678, 878, 985
MspR9I CCNGG 5 cut(s) 260, 663, 827, 878, 1170
MvaI CCWGG 3 cut(s) 663, 827, 1170
MvnI CGCG 1 cut(s) 552
MwoI GCNNNNNNNGC 7 cut(s) 359, 450, 558, 625, 1220, 1283, 1292
NciI CCSGG 2 cut(s) 260, 878
NcoI CCATGG 1 cut(s) 1128
NdeI CATATG 1 cut(s) 226
NdeII GATC 2 cut(s) 91, 748
NlaIV GGNNCC 2 cut(s) 1167, 1213
NsiI ATGCAT 2 cut(s) 207, 435
NspI RCATGY 3 cut(s) 437, 1223, 1286
NspV TTCGAA 1 cut(s) 237
PaeI GCATGC 1 cut(s) 437
PaeR7I CTCGAG 2 cut(s) 799, 1081
PagI TCATGA 1 cut(s) 939
PceI AGGCCT 1 cut(s) 661
PcsI WCGNNNNNNNCGW 1 cut(s) 453
PdmI GAANNNNTTC 1 cut(s) 926
PfeI GAWTC 6 cut(s) 821, 881, 948, 1077, 1173, 1313
PfoI TCCNGGA 1 cut(s) 876
PinAI ACCGGT 1 cut(s) 984
PkrI GCNGC 7 cut(s) 443, 478, 727, 763, 976, 1276, 1288
PleI GAGTC 1 cut(s) 930
PpsI GAGTC 1 cut(s) 930
PsiI TTATAA 1 cut(s) 288
Psp124BI GAGCTC 1 cut(s) 267
Psp6I CCWGG 3 cut(s) 661, 825, 1168
PspFI CCCAGC 1 cut(s) 164
PspGI CCWGG 3 cut(s) 661, 825, 1168
PspN4I GGNNCC 2 cut(s) 1167, 1213
RsaI GTAC 2 cut(s) 525, 901
RsaNI GTAC 2 cut(s) 524, 900
RseI CAYNNNNRTG 1 cut(s) 47
SacI GAGCTC 1 cut(s) 267
SaqAI TTAA 2 cut(s) 849, 867
SatI GCNGC 7 cut(s) 442, 477, 726, 762, 975, 1275, 1287
Sau3AI GATC 2 cut(s) 91, 748
SchI GAGTC 1 cut(s) 930
ScrFI CCNGG 5 cut(s) 260, 663, 827, 878, 1170
SduI GDGCHC 4 cut(s) 250, 267, 984, 992
SfaNI GCATC 4 cut(s) 361, 606, 773, 801
SfiI GGCCNNNNNGGCC 1 cut(s) 450
Sfr274I CTCGAG 2 cut(s) 799, 1081
SfuI TTCGAA 1 cut(s) 237
SgrAI CRCCGGYG 1 cut(s) 984
SlaI CTCGAG 2 cut(s) 799, 1081
SmiMI CAYNNNNRTG 1 cut(s) 47
SmlI CTYRAG 2 cut(s) 799, 1081
SmoI CTYRAG 2 cut(s) 799, 1081
SphI GCATGC 1 cut(s) 437
Sse9I AATT 8 cut(s) 175, 233, 668, 702, 729, 891, 1056, 1339
SseBI AGGCCT 1 cut(s) 661
SsiI CCGC 4 cut(s) 441, 552, 854, 993
SspMI CTAG 3 cut(s) 674, 818, 1115
SstI GAGCTC 1 cut(s) 267
StuI AGGCCT 1 cut(s) 661
StyD4I CCNGG 5 cut(s) 258, 661, 825, 876, 1168
StyI CCWWGG 1 cut(s) 1128
TaaI ACNGT 4 cut(s) 172, 520, 1042, 1321
TaiI ACGT 1 cut(s) 459
TaqI TCGA 7 cut(s) 237, 267, 800, 951, 1002, 1082, 1248
TasI AATT 8 cut(s) 175, 233, 668, 702, 729, 891, 1056, 1339
TatI WGTACW 1 cut(s) 523
TauI GCSGC 1 cut(s) 444
TfiI GAWTC 6 cut(s) 821, 881, 948, 1077, 1173, 1313
Tru1I TTAA 2 cut(s) 849, 867
Tru9I TTAA 2 cut(s) 849, 867
TscAI CASTG 2 cut(s) 135, 177
TseI GCWGC 6 cut(s) 476, 725, 761, 974, 1274, 1286
TspDTI ATGAA 8 cut(s) 174, 197, 213, 243, 956, 1077, 1165, 1325
TspRI CASTG 2 cut(s) 135, 177
VneI GTGCAC 2 cut(s) 246, 980
XapI RAATTY 4 cut(s) 233, 668, 702, 1056
XbaI TCTAGA 1 cut(s) 817
XceI RCATGY 3 cut(s) 437, 1223, 1286
XhoI CTCGAG 2 cut(s) 799, 1081
XmnI GAANNNNTTC 1 cut(s) 926
XspI CTAG 3 cut(s) 674, 818, 1115
Zsp2I ATGCAT 2 cut(s) 207, 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.