FvH4_5g01000

Guard cell S-type anion channel

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
588166 .. 590397
2232 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g01000.t1

Sequence Viewer

Length: 1698 bp
ATGGATAAACGAAATACTGCTCCATGTTTTCTTGATACTCATCTTGTTGATATCCATGAAGTCCTACCAGAAGAGGAAGAAGAAGAGGGAATTACCAAAGAGGAAAATGGAGAGGTAGAGAAGCGCTTTAACAAACCCTTTGAACTTAGAGAGATGAAGAGTACTACTAGTCAAAGGAGTAAGATCAATCGGCAGGTTTCTCTAGAGACTGGTTTTTCAGTGCTTCGTAAAGAGTCGAAGAAGGGTAAAGATGAGAGCGGTGGTGTTAATCTTCCCAGAAGTGGAAGGAGTTTTGGAGGTTTCGATTCCCTTAATAGGTTTGGAATGGAAGGAAGGAAAGGAGACTTCAGTATCTTCAAGACCAGATCATCAAGCCTCAGTAAGCAAAACTCTTTGTTGCCATCAAGAAAGGAAAGATCAGAGATGGAGTCTCAGAAGACTGATGGAGCAGGACTGGATGAGTCTGTTGATACAAGTGTTCCTGCTGGCAGATACTTTGCTGCACTTAGAGGGCCTGAACTTGACCAAGTCAAGGATGATGAGGATATTCTCCTCCCAAAAGATGAGCAATGGCCCTTTCTCCTCAGATTTCCAATTGGATGCTTTGGTATTTGTCTTGGCCTTAGCAGCCAAGCAGTTTTATGGCGTGCTCTCGCGACAAGCTCAGCCACCGAGTTTCTCCACATCCCACTCTTCATAAACCTTGCCCTCTGGCTTTTAGCAGTAGCAGTCCTATTTTGTGTCTCCCTGACCTATATGCTCAAAATTATCTTCTACTGTGAAGCAGTCAAAAGAGAGTACTTCCACCCTGTGAGAGTCAACTTCTTTTTTGCTCCTTGGGTTGTATGCATGTTCTTAGCCCTTGGTGCACCACCAACTTTGTTTCCTAATAAACTCCAACCTGCAATTTGGTGCACCTTCATGTTACCCTACTTTCTTCTGGAACTTAAAATCTATGGACAGTGGCTTTCGGGTGGGAAGAGGCGTCTCTGTAAGGTGGCAAATCCATCTTCTCATCTCTCAGTGGTTGGAAACTTTGTTGGGGCAATTTTGGCTGCCAAGGTGGGGTGGAAGGAGCCTGCAAAGTTCTTGTGGGCAGTAGGCTTTGCACATTACTATGTGGTTTTTGTTACTTTGTATCAGAGATTACCAACAAGTGAAGCATTGCCTAGGGAGCTTCATCCAGTGTATTCCATGTTCATTGCCGCCCCATCAGCCGCAAGTATGGCTTGGCAGAACATTTATGGTGAATTCGATGGAGTGTCAAGGACCTGCTACTTCATTGCATTTTTTCTATATCTTTCACTGGTTGTGAGGATCAAATTCTTCACAGGGTTTAGATTTTCGGTGGCTTGGTGGGCATACACCTTCCCAACGACAACATTCGCAGTTGCCACCATTAGGTATGCAGAAGAAGTACCGTCAATTCTAACCAAGGGCCTCGCAGTTACTCTTTCTTTCATGTCATCAACAACAGTGTCTGTACTGTTTGTATCCACTCTTCTTCATGCCTTTGTCTGGCGCACCTTGTTTCCGAATGATCTTGCCATAGCCATAACAAAGAGAAGACTTGGGAAGGCGAAGAAACCCTTCAAAAAAGCCTATGATATAAAGCGCTGGACAAAGCAGGCTCTAACCAAGAACAATTTAGCAGCAAAGGTTTCCAATGGAGGGAAAGAAGACAGCTTCTATCCATAG

Protein Analysis

566

Amino Acids

63.92

Weight (kDa)

9.33

Isoelectric Point (pI)

49.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SLAC1 PF03595 196 - 501 4.8e-43 Voltage-dependent anion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0015055)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12480
fragaria_vesca FvH4_5g01000
malus_domestica MD04G1076000.v1.1
prunus_persica Prupe.5G083800_v2.0.a1
pyrus_communis pycom04g06690
rosa_chinensis RchiOBHm_Chr7g0200381
rosa_laevigata RLG00000003731
rosa_multiflora Rmu_sc0005211.1_g000002 Rmu_sc0019054.1_g000003
rosa_roxburghii Rroxscaffold_3G00256050
rosa_rugosa Rorug07G0059900
rosa_samantha Rh7AG185100 Rh7BG188200 Rh7CG195400 Rh7DG189200
rosa_wichuraiana Rw7G016220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 184, 910, 1280
AccBSI CCGCTC 1 cut(s) 258
AccII CGCG 1 cut(s) 656
AciI CCGC 3 cut(s) 258, 1206, 1218
AclWI GGATC 1 cut(s) 1325
AcsI RAATTY 2 cut(s) 1250, 1322
AcuI CTGAAG 1 cut(s) 331
AcyI GRCGYC 1 cut(s) 985
AdeI CACNNNGTG 1 cut(s) 811
AfaI GTAC 4 cut(s) 163, 800, 1419, 1485
AfeI AGCGCT 2 cut(s) 125, 1616
AfiI CCNNNNNNNGG 7 cut(s) 281, 315, 532, 1065, 1401, 1518, 1671
AgsI TTSAA 3 cut(s) 143, 358, 1594
AhlI ACTAGT 1 cut(s) 167
AluBI AGCT 3 cut(s) 663, 1177, 1686
AluI AGCT 3 cut(s) 663, 1177, 1686
Alw21I GWGCWC 3 cut(s) 652, 871, 917
Alw26I GTCTC 5 cut(s) 200, 336, 435, 748, 992
Alw44I GTGCAC 2 cut(s) 867, 913
AlwI GGATC 1 cut(s) 1325
AlwNI CAGNNNCTG 1 cut(s) 1481
Aor51HI AGCGCT 2 cut(s) 125, 1616
AoxI GGCC 4 cut(s) 512, 572, 619, 1438
ApaLI GTGCAC 2 cut(s) 867, 913
ApeKI GCWGC 4 cut(s) 500, 627, 1055, 1652
ApoI RAATTY 2 cut(s) 1250, 1322
Asp700I GAANNNNTTC 1 cut(s) 1589
AspA2I CCTAGG 1 cut(s) 1169
AspLEI GCGC 3 cut(s) 126, 1524, 1617
AspS9I GGNCC 4 cut(s) 512, 573, 1269, 1438
AsuHPI GGTGA 1 cut(s) 1259
AvaII GGWCC 1 cut(s) 1269
AvrII CCTAGG 1 cut(s) 1169
BaeGI GKGCMC 2 cut(s) 871, 917
BaeI ACNNNNGTAYC 4 cut(s) 334, 367, 462, 495
BarI GAAGNNNNNNTAC 2 cut(s) 1485, 1517
BbsI GAAGAC 3 cut(s) 443, 1573, 1686
Bbv12I GWGCWC 3 cut(s) 652, 871, 917
BbvI GCAGC 4 cut(s) 487, 639, 1042, 1664
BccI CCATC 6 cut(s) 409, 418, 437, 1015, 1219, 1250
BciVI GTATCC 1 cut(s) 1504
BcoDI GTCTC 5 cut(s) 200, 336, 435, 748, 992
BcuI ACTAGT 1 cut(s) 167
BfaI CTAG 3 cut(s) 168, 203, 1170
BfoI RGCGCY 2 cut(s) 127, 1618
BfuAI ACCTGC 3 cut(s) 184, 910, 1280
BfuI GTATCC 1 cut(s) 1504
BisI GCNGC 6 cut(s) 501, 628, 1056, 1206, 1218, 1653
BlnI CCTAGG 1 cut(s) 1169
BlpI GCTNAGC 1 cut(s) 664
BlsI GCNGC 6 cut(s) 502, 629, 1057, 1207, 1219, 1654
BmcAI AGTACT 2 cut(s) 163, 800
Bme18I GGWCC 1 cut(s) 1269
BmgT120I GGNCC 4 cut(s) 512, 573, 1269, 1438
BmiI GGNNCC 1 cut(s) 1077
BmsI GCATC 1 cut(s) 590
BpiI GAAGAC 3 cut(s) 443, 1573, 1686
Bpu10I CCTNAGC 1 cut(s) 623
Bpu1102I GCTNAGC 1 cut(s) 664
BsaBI GATNNNNATC 1 cut(s) 39
BsaHI GRCGYC 1 cut(s) 985
BsaJI CCNNGG 5 cut(s) 836, 862, 1059, 1169, 1434
Bsc4I CCNNNNNNNGG 7 cut(s) 281, 315, 532, 1065, 1401, 1518, 1671
Bse1I ACTGG 4 cut(s) 214, 459, 1184, 1311
Bse3DI GCAATG 4 cut(s) 575, 1163, 1200, 1281
Bse8I GATNNNNATC 1 cut(s) 39
BseDI CCNNGG 5 cut(s) 836, 862, 1059, 1169, 1434
BseGI GGATG 5 cut(s) 463, 541, 605, 684, 1180
BseJI GATNNNNATC 1 cut(s) 39
BseLI CCNNNNNNNGG 7 cut(s) 281, 315, 532, 1065, 1401, 1518, 1671
BseMI GCAATG 4 cut(s) 575, 1163, 1200, 1281
BseMII CTCAG 5 cut(s) 391, 446, 598, 678, 1035
BseNI ACTGG 4 cut(s) 214, 459, 1184, 1311
BseRI GAGGAG 2 cut(s) 542, 572
BseSI GKGCMC 2 cut(s) 871, 917
BseXI GCAGC 4 cut(s) 487, 639, 1042, 1664
BsgI GTGCAG 1 cut(s) 486
Bsh1236I CGCG 1 cut(s) 656
BshFI GGCC 4 cut(s) 514, 574, 621, 1440
BsiHKAI GWGCWC 3 cut(s) 652, 871, 917
BslI CCNNNNNNNGG 7 cut(s) 281, 315, 532, 1065, 1401, 1518, 1671
BsmAI GTCTC 5 cut(s) 200, 336, 435, 748, 992
BsmBI CGTCTC 1 cut(s) 992
BsnI GGCC 4 cut(s) 514, 574, 621, 1440
Bsp1286I GDGCHC 3 cut(s) 652, 871, 917
Bsp143I GATC 5 cut(s) 183, 365, 416, 1317, 1540
Bsp1720I GCTNAGC 1 cut(s) 664
Bsp68I TCGCGA 1 cut(s) 656
BspACI CCGC 3 cut(s) 258, 1206, 1218
BspANI GGCC 4 cut(s) 514, 574, 621, 1440
BspCNI CTCAG 5 cut(s) 390, 445, 597, 677, 1034
BspFNI CGCG 1 cut(s) 656
BspLI GGNNCC 1 cut(s) 1077
BspMI ACCTGC 3 cut(s) 184, 910, 1280
BspPI GGATC 1 cut(s) 1325
BsrBI CCGCTC 1 cut(s) 258
BsrDI GCAATG 4 cut(s) 575, 1163, 1200, 1281
BsrI ACTGG 4 cut(s) 214, 459, 1184, 1311
BssECI CCNNGG 5 cut(s) 836, 862, 1059, 1169, 1434
BssMI GATC 5 cut(s) 183, 365, 416, 1317, 1540
BssNI GRCGYC 1 cut(s) 985
BssT1I CCWWGG 5 cut(s) 836, 862, 1059, 1169, 1434
Bst4CI ACNGT 5 cut(s) 779, 963, 1422, 1477, 1488
Bst6I CTCTTC 6 cut(s) 66, 78, 152, 698, 974, 1506
BstACI GRCGYC 1 cut(s) 985
BstC8I GCNNGC 4 cut(s) 487, 648, 1080, 1629
BstDEI CTNAG 9 cut(s) 146, 377, 432, 506, 584, 623, 664, 856, 1021
BstF5I GGATG 5 cut(s) 463, 541, 605, 684, 1180
BstFNI CGCG 1 cut(s) 656
BstH2I RGCGCY 2 cut(s) 127, 1618
BstHHI GCGC 3 cut(s) 126, 1524, 1617
BstKTI GATC 5 cut(s) 186, 368, 419, 1320, 1543
BstMAI GTCTC 5 cut(s) 200, 336, 435, 748, 992
BstMBI GATC 5 cut(s) 183, 365, 416, 1317, 1540
BstMWI GCNNNNNNNGC 7 cut(s) 627, 866, 1052, 1174, 1214, 1226, 1358
BstNSI RCATGY 1 cut(s) 853
BstSLI GKGCMC 2 cut(s) 871, 917
BstUI CGCG 1 cut(s) 656
BstV1I GCAGC 4 cut(s) 487, 639, 1042, 1664
BstV2I GAAGAC 3 cut(s) 443, 1573, 1686
BsuI GTATCC 1 cut(s) 1504
BsuRI GGCC 4 cut(s) 514, 574, 621, 1440
BtsCI GGATG 5 cut(s) 463, 541, 605, 684, 1180
BtsIMutI CAGTG 6 cut(s) 225, 968, 1029, 1191, 1304, 1482
BtuMI TCGCGA 1 cut(s) 656
BveI ACCTGC 3 cut(s) 184, 910, 1280
Cac8I GCNNGC 4 cut(s) 487, 648, 1080, 1629
CaiI CAGNNNCTG 1 cut(s) 1481
CfoI GCGC 3 cut(s) 126, 1524, 1617
Cfr13I GGNCC 4 cut(s) 512, 573, 1269, 1438
CseI GACGC 1 cut(s) 974
Csp6I GTAC 4 cut(s) 162, 799, 1418, 1484
CspCI CAANNNNNGTGG 2 cut(s) 861, 896
CviAII CATG 7 cut(s) 24, 56, 850, 922, 1195, 1462, 1508
CviQI GTAC 4 cut(s) 162, 799, 1418, 1484
DdeI CTNAG 9 cut(s) 146, 377, 432, 506, 584, 623, 664, 856, 1021
DpnI GATC 5 cut(s) 185, 367, 418, 1319, 1542
DpnII GATC 5 cut(s) 183, 365, 416, 1317, 1540
DraIII CACNNNGTG 1 cut(s) 811
Eam1104I CTCTTC 6 cut(s) 66, 78, 152, 698, 974, 1506
EarI CTCTTC 6 cut(s) 66, 78, 152, 698, 974, 1506
Eco130I CCWWGG 5 cut(s) 836, 862, 1059, 1169, 1434
Eco32I GATATC 1 cut(s) 52
Eco47I GGWCC 1 cut(s) 1269
Eco47III AGCGCT 2 cut(s) 125, 1616
Eco57I CTGAAG 1 cut(s) 331
EcoO109I RGGNCCY 3 cut(s) 512, 1269, 1438
EcoRI GAATTC 1 cut(s) 1250
EcoRV GATATC 1 cut(s) 52
EcoT14I CCWWGG 5 cut(s) 836, 862, 1059, 1169, 1434
EcoT22I ATGCAT 1 cut(s) 851
ErhI CCWWGG 5 cut(s) 836, 862, 1059, 1169, 1434
Esp3I CGTCTC 1 cut(s) 992
FaeI CATG 7 cut(s) 27, 59, 853, 925, 1198, 1465, 1511
FalI AAGNNNNNCTT 4 cut(s) 1213, 1245, 1574, 1606
FatI CATG 7 cut(s) 23, 55, 849, 921, 1194, 1461, 1507
Fnu4HI GCNGC 6 cut(s) 501, 628, 1056, 1206, 1218, 1653
FokI GGATG 5 cut(s) 470, 548, 612, 671, 1167
Fsp4HI GCNGC 6 cut(s) 501, 628, 1056, 1206, 1218, 1653
FspBI CTAG 3 cut(s) 168, 203, 1170
GlaI GCGC 3 cut(s) 125, 1523, 1616
GluI GCNGC 6 cut(s) 501, 628, 1056, 1206, 1218, 1653
HaeII RGCGCY 2 cut(s) 127, 1618
HaeIII GGCC 4 cut(s) 514, 574, 621, 1440
HgaI GACGC 1 cut(s) 974
HhaI GCGC 3 cut(s) 126, 1524, 1617
Hin1I GRCGYC 1 cut(s) 985
Hin1II CATG 7 cut(s) 27, 59, 853, 925, 1198, 1465, 1511
Hin6I GCGC 3 cut(s) 124, 1522, 1615
HinP1I GCGC 3 cut(s) 124, 1522, 1615
HincII GTYRAC 1 cut(s) 820
HindII GTYRAC 1 cut(s) 820
HinfI GANTC 5 cut(s) 233, 305, 428, 461, 816
HphI GGTGA 1 cut(s) 1259
Hpy166II GTNNAC 3 cut(s) 820, 869, 915
Hpy188I TCNGA 5 cut(s) 421, 435, 587, 1143, 1536
Hpy188III TCNNGA 6 cut(s) 32, 203, 358, 405, 655, 941
Hpy8I GTNNAC 3 cut(s) 820, 869, 915
HpyAV CCTTC 9 cut(s) 235, 279, 323, 327, 928, 1066, 1378, 1570, 1600
HpyCH4III ACNGT 5 cut(s) 779, 963, 1422, 1477, 1488
HpyCH4V TGCA 9 cut(s) 503, 849, 869, 905, 915, 1082, 1109, 1286, 1409
HpyF10VI GCNNNNNNNGC 7 cut(s) 627, 866, 1052, 1174, 1214, 1226, 1358
HpyF3I CTNAG 9 cut(s) 146, 377, 432, 506, 584, 623, 664, 856, 1021
Hsp92I GRCGYC 1 cut(s) 985
Hsp92II CATG 7 cut(s) 27, 59, 853, 925, 1198, 1465, 1511
HspAI GCGC 3 cut(s) 124, 1522, 1615
Kzo9I GATC 5 cut(s) 183, 365, 416, 1317, 1540
LmnI GCTCC 5 cut(s) 25, 446, 838, 1075, 1174
Lsp1109I GCAGC 4 cut(s) 487, 639, 1042, 1664
LweI GCATC 1 cut(s) 590
MaeI CTAG 3 cut(s) 168, 203, 1170
MaeIII GTNAC 3 cut(s) 924, 1129, 1447
MalI GATC 5 cut(s) 185, 367, 418, 1319, 1542
MbiI CCGCTC 1 cut(s) 258
MboI GATC 5 cut(s) 183, 365, 416, 1317, 1540
MfeI CAATTG 1 cut(s) 594
MhlI GDGCHC 3 cut(s) 652, 871, 917
MluCI AATT 9 cut(s) 90, 594, 765, 906, 1047, 1250, 1322, 1425, 1645
MlyI GAGTC 4 cut(s) 242, 437, 470, 825
MmeI TCCRAC 2 cut(s) 922, 1009
Mph1103I ATGCAT 1 cut(s) 851
MroXI GAANNNNTTC 1 cut(s) 1589
MseI TTAA 4 cut(s) 129, 267, 312, 948
MslI CAYNNNNRTG 2 cut(s) 920, 1116
MunI CAATTG 1 cut(s) 594
MvnI CGCG 1 cut(s) 656
MwoI GCNNNNNNNGC 7 cut(s) 627, 866, 1052, 1174, 1214, 1226, 1358
NdeII GATC 5 cut(s) 183, 365, 416, 1317, 1540
NlaIII CATG 7 cut(s) 27, 59, 853, 925, 1198, 1465, 1511
NlaIV GGNNCC 1 cut(s) 1077
NruI TCGCGA 1 cut(s) 656
NsiI ATGCAT 1 cut(s) 851
NspI RCATGY 1 cut(s) 853
PdmI GAANNNNTTC 1 cut(s) 1589
PfeI GAWTC 1 cut(s) 305
PflFI GACNNNGTC 1 cut(s) 527
PkrI GCNGC 6 cut(s) 502, 629, 1057, 1207, 1219, 1654
PleI GAGTC 4 cut(s) 241, 436, 469, 824
PpsI GAGTC 4 cut(s) 241, 436, 469, 824
PpuMI RGGWCCY 1 cut(s) 1269
Psp5II RGGWCCY 1 cut(s) 1269
PspN4I GGNNCC 1 cut(s) 1077
PspPI GGNCC 4 cut(s) 512, 573, 1269, 1438
PspPPI RGGWCCY 1 cut(s) 1269
PsrI GAACNNNNNNTAC 2 cut(s) 1181, 1213
PstNI CAGNNNCTG 1 cut(s) 1481
PsyI GACNNNGTC 1 cut(s) 527
RruI TCGCGA 1 cut(s) 656
RsaI GTAC 4 cut(s) 163, 800, 1419, 1485
RsaNI GTAC 4 cut(s) 162, 799, 1418, 1484
RseI CAYNNNNRTG 2 cut(s) 920, 1116
SaqAI TTAA 4 cut(s) 129, 267, 312, 948
SatI GCNGC 6 cut(s) 501, 628, 1056, 1206, 1218, 1653
Sau3AI GATC 5 cut(s) 183, 365, 416, 1317, 1540
Sau96I GGNCC 4 cut(s) 512, 573, 1269, 1438
ScaI AGTACT 2 cut(s) 163, 800
SchI GAGTC 4 cut(s) 242, 437, 470, 825
SduI GDGCHC 3 cut(s) 652, 871, 917
SfaNI GCATC 1 cut(s) 590
SinI GGWCC 1 cut(s) 1269
SmiMI CAYNNNNRTG 2 cut(s) 920, 1116
SpeI ACTAGT 1 cut(s) 167
Sse9I AATT 9 cut(s) 90, 594, 765, 906, 1047, 1250, 1322, 1425, 1645
SsiI CCGC 3 cut(s) 258, 1206, 1218
SspMI CTAG 3 cut(s) 168, 203, 1170
StyI CCWWGG 5 cut(s) 836, 862, 1059, 1169, 1434
TaaI ACNGT 5 cut(s) 779, 963, 1422, 1477, 1488
TaqI TCGA 3 cut(s) 236, 303, 1254
TasI AATT 9 cut(s) 90, 594, 765, 906, 1047, 1250, 1322, 1425, 1645
TatI WGTACW 3 cut(s) 161, 798, 1483
TauI GCSGC 2 cut(s) 1208, 1220
TfiI GAWTC 1 cut(s) 305
Tru1I TTAA 4 cut(s) 129, 267, 312, 948
Tru9I TTAA 4 cut(s) 129, 267, 312, 948
TscAI CASTG 6 cut(s) 225, 968, 1029, 1191, 1311, 1482
TseI GCWGC 4 cut(s) 500, 627, 1055, 1652
TspDTI ATGAA 9 cut(s) 72, 170, 685, 910, 1169, 1189, 1270, 1450, 1496
TspRI CASTG 6 cut(s) 225, 968, 1029, 1191, 1311, 1482
Tth111I GACNNNGTC 1 cut(s) 527
VneI GTGCAC 2 cut(s) 867, 913
VpaK11BI GGWCC 1 cut(s) 1269
XapI RAATTY 2 cut(s) 1250, 1322
XbaI TCTAGA 1 cut(s) 202
XceI RCATGY 1 cut(s) 853
XmaJI CCTAGG 1 cut(s) 1169
XmnI GAANNNNTTC 1 cut(s) 1589
XspI CTAG 3 cut(s) 168, 203, 1170
ZrmI AGTACT 2 cut(s) 163, 800
Zsp2I ATGCAT 1 cut(s) 851
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.