Rh7BG188200

Guard cell S-type anion channel

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
Physical Location & Seq
Forward (+)
15158093 .. 15160280
2188 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG188200.1

Sequence Viewer

Length: 1542 bp
ATGAAGAGTAGTAGTCAAAGGAGTTCGATCAACAGGCAGGTTTCTCTAGAGACTGGTTTTTCGGTGCTTCGAAAAGAGTCCAAGAGGGCTAAAGATGAGAACATTGGTGTTAATCTTCCCAGAAGTGGAAGAAGTTTCGGAGGTTTTGATTCCATTAACAGGTTTGGCATGGAAGGAAGGAAAGGAGACTTCAGCATCTTCAAGACCAAATCATCAAACCTCAGTAGGCAAAACTCTTTGTTGCCATCAAAAAAGGGAAGATCAGAGATGGAGTCTCAGAAGACTGATGGAGCAGGACCCCATGAGTCTGTTGATACAAGTGTTCCTGCTGGCAGATACTTTGCTGCACTTAGAGGGCCTGAACTTGACCAAGTCAAGGATGATGAAGATATTCTCCTCCCAAAAGATGAGCAATGGCCCTTTCTCCTCAGATTTCCAATTGGATGCTTTGGTATTTGTCTTGGCCTTAGCAGCCAAGCAGTCTTATGGCGTGCTCTTGCGACAAGCCCAGCCACTGAGTTTCTCCACATCCCACTCTTCATAAACCTTGCCCTCTGGCTTTTAGCATTAGCAGTCCTATTTTGTGTCTCCTTCACCTATATTCTCAAAATTCTCTTCTACTTTGAAGCAGTCAAAAGAGAGTACTTCCACCCTGTGAGAGTCAACTTCTTCTTTGCTCCTTGGGTTGTATGCATGTTCTTAGCCCTTGGTGCACCACCAACTTTGTTCCCTAATAAACTCCAACCTGCAATTTGGTGCACCTTCATGTTACCCTACTTTCTTCTGGAACTCAAGATCTATGGACAGTGGCTTTCCGGTGGGAAGAGGCGTCTTTGTAAGGTGGCCAATCCATCTTCTCATCTCTCAGTGGTTGGAAACTTTGTTGGGGCGATTTTGGCTGCCAAGGTTGGGTGGAAGGAGCCTGCCAAGTTCCTGTGGGCAGTAGGCTTTGCACATTACTTTGTGGTTTTTGTTACTTTGTATCAGAGATTGCCAACAAGTGAAGCGTTGCCGAGGGAGCTCCATCCGGTGTATTCCATGTTCATTGCTGCGCCATCAGCCGCAAGTATGGCTTGGCAGAACATTTATGGTGATTTCAATGAGGTGTCAAGGACCTGCTACTTCATCGCACTGTTTCTCTATATTTTACTGGTTGTGAGGATCAAATTCTTCACAGGGTTTAGATTTTCGGTGGCTTGGTGGGCATACACCTTTCCAATGACAACATTCTCAGTTGCCACCATTAAGTATGCAGAAGAAGTACCGTCAGTTCTAACCAAGGGCCTCGCAGTTACTCTTTCTTTCATGTCATCAACAACGGTGTCTGTACTGTTTGTGTCCACTCTTCTTCATGCCTTTGTTTGGCACACATTGTTTCCTAATGATCTTGCCATAGCCATAACAAAGCGAAGACTTGGCAAGGAGAAGAAACCCTTCAAAAAGGCCTATGATATAAAGCGCTGGACAAAGCAGGCTCTAACCAAGAACAATATAGCAGCAAAGGTTTCTGATGGAGGGAAAGAAGACAGCTTCCATCCATAG

Protein Analysis

513

Amino Acids

57.9

Weight (kDa)

9.71

Isoelectric Point (pI)

48.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SLAC1 PF03595 144 - 449 1.1e-45 Voltage-dependent anion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015055)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12480
fragaria_vesca FvH4_5g01000
malus_domestica MD04G1076000.v1.1
prunus_persica Prupe.5G083800_v2.0.a1
pyrus_communis pycom04g06690
rosa_chinensis RchiOBHm_Chr7g0200381
rosa_laevigata RLG00000003731
rosa_multiflora Rmu_sc0005211.1_g000002 Rmu_sc0019054.1_g000003
rosa_roxburghii Rroxscaffold_3G00256050
rosa_rugosa Rorug07G0059900
rosa_samantha Rh7AG185100 Rh7BG188200 Rh7CG195400 Rh7DG189200
rosa_wichuraiana Rw7G016220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 28, 754, 1124
AciI CCGC 1 cut(s) 1062
AclWI GGATC 1 cut(s) 1169
AcoI YGGCCR 1 cut(s) 843
AcsI RAATTY 2 cut(s) 609, 1166
AcuI CTGAAG 1 cut(s) 175
AcyI GRCGYC 1 cut(s) 829
AdeI CACNNNGTG 1 cut(s) 655
AfaI GTAC 3 cut(s) 644, 1263, 1329
AfeI AGCGCT 1 cut(s) 1460
AfiI CCNNNNNNNGG 5 cut(s) 125, 159, 376, 909, 1362
AgsI TTSAA 4 cut(s) 202, 626, 1099, 1438
AluBI AGCT 2 cut(s) 1021, 1530
AluI AGCT 2 cut(s) 1021, 1530
Alw21I GWGCWC 4 cut(s) 496, 715, 761, 1023
Alw26I GTCTC 4 cut(s) 44, 180, 279, 592
Alw44I GTGCAC 2 cut(s) 711, 757
AlwI GGATC 1 cut(s) 1169
AlwNI CAGNNNCTG 1 cut(s) 515
Aor51HI AGCGCT 1 cut(s) 1460
AoxI GGCC 6 cut(s) 356, 416, 463, 843, 1282, 1443
ApaLI GTGCAC 2 cut(s) 711, 757
ApeKI GCWGC 5 cut(s) 344, 471, 899, 1049, 1496
ApoI RAATTY 2 cut(s) 609, 1166
ArsI GACNNNNNNTTYG 2 cut(s) 43, 75
Asp700I GAANNNNTTC 2 cut(s) 390, 1433
AspLEI GCGC 2 cut(s) 1054, 1461
AspS9I GGNCC 5 cut(s) 296, 356, 417, 1113, 1282
AsuHPI GGTGA 2 cut(s) 586, 1103
AsuII TTCGAA 1 cut(s) 70
AvaII GGWCC 2 cut(s) 296, 1113
BaeGI GKGCMC 2 cut(s) 715, 761
BaeI ACNNNNGTAYC 2 cut(s) 306, 339
BalI TGGCCA 1 cut(s) 845
BanII GRGCYC 1 cut(s) 1023
BbsI GAAGAC 3 cut(s) 287, 1417, 1530
Bbv12I GWGCWC 4 cut(s) 496, 715, 761, 1023
BbvI GCAGC 5 cut(s) 331, 483, 886, 1036, 1508
BccI CCATC 7 cut(s) 253, 262, 281, 859, 1032, 1063, 1505
BcoDI GTCTC 4 cut(s) 44, 180, 279, 592
BfaI CTAG 1 cut(s) 47
BfoI RGCGCY 1 cut(s) 1462
BfuAI ACCTGC 3 cut(s) 28, 754, 1124
BglII AGATCT 1 cut(s) 795
BisI GCNGC 6 cut(s) 345, 472, 900, 1050, 1062, 1497
BlsI GCNGC 6 cut(s) 346, 473, 901, 1051, 1063, 1498
BmcAI AGTACT 1 cut(s) 644
Bme18I GGWCC 2 cut(s) 296, 1113
BmgT120I GGNCC 5 cut(s) 296, 356, 417, 1113, 1282
BmiI GGNNCC 2 cut(s) 298, 921
BmsI GCATC 2 cut(s) 204, 434
BpiI GAAGAC 3 cut(s) 287, 1417, 1530
Bpu10I CCTNAGC 1 cut(s) 467
Bpu14I TTCGAA 1 cut(s) 70
BpuEI CTTGAG 1 cut(s) 776
BsaHI GRCGYC 1 cut(s) 829
BsaJI CCNNGG 5 cut(s) 680, 706, 903, 1013, 1278
BsaWI WCCGGW 2 cut(s) 815, 1027
Bsc4I CCNNNNNNNGG 5 cut(s) 125, 159, 376, 909, 1362
Bse1I ACTGG 2 cut(s) 58, 1155
Bse3DI GCAATG 2 cut(s) 419, 1044
BseDI CCNNGG 5 cut(s) 680, 706, 903, 1013, 1278
BseGI GGATG 5 cut(s) 385, 449, 528, 1024, 1534
BseLI CCNNNNNNNGG 5 cut(s) 125, 159, 376, 909, 1362
BseMI GCAATG 2 cut(s) 419, 1044
BseMII CTCAG 6 cut(s) 235, 290, 442, 507, 879, 1245
BseNI ACTGG 2 cut(s) 58, 1155
BseRI GAGGAG 2 cut(s) 386, 416
BseSI GKGCMC 2 cut(s) 715, 761
BseXI GCAGC 5 cut(s) 331, 483, 886, 1036, 1508
BseYI CCCAGC 1 cut(s) 508
BsgI GTGCAG 1 cut(s) 330
BshFI GGCC 6 cut(s) 358, 418, 465, 845, 1284, 1445
BsiHKAI GWGCWC 4 cut(s) 496, 715, 761, 1023
BsiSI CCGG 2 cut(s) 816, 1028
BslI CCNNNNNNNGG 5 cut(s) 125, 159, 376, 909, 1362
BsmAI GTCTC 4 cut(s) 44, 180, 279, 592
BsnI GGCC 6 cut(s) 358, 418, 465, 845, 1284, 1445
Bsp119I TTCGAA 1 cut(s) 70
Bsp1286I GDGCHC 4 cut(s) 496, 715, 761, 1023
Bsp143I GATC 5 cut(s) 27, 260, 795, 1161, 1384
BspACI CCGC 1 cut(s) 1062
BspANI GGCC 6 cut(s) 358, 418, 465, 845, 1284, 1445
BspCNI CTCAG 6 cut(s) 234, 289, 441, 508, 878, 1244
BspLI GGNNCC 2 cut(s) 298, 921
BspMI ACCTGC 3 cut(s) 28, 754, 1124
BspPI GGATC 1 cut(s) 1169
BspT104I TTCGAA 1 cut(s) 70
BsrDI GCAATG 2 cut(s) 419, 1044
BsrI ACTGG 2 cut(s) 58, 1155
BssECI CCNNGG 5 cut(s) 680, 706, 903, 1013, 1278
BssMI GATC 5 cut(s) 27, 260, 795, 1161, 1384
BssNI GRCGYC 1 cut(s) 829
BssT1I CCWWGG 4 cut(s) 680, 706, 903, 1278
Bst4CI ACNGT 5 cut(s) 807, 1134, 1266, 1321, 1332
Bst6I CTCTTC 4 cut(s) 542, 620, 818, 1350
BstACI GRCGYC 1 cut(s) 829
BstBI TTCGAA 1 cut(s) 70
BstC8I GCNNGC 4 cut(s) 331, 492, 924, 1473
BstDEI CTNAG 9 cut(s) 221, 276, 350, 428, 467, 516, 700, 865, 1231
BstF5I GGATG 5 cut(s) 385, 449, 528, 1024, 1534
BstH2I RGCGCY 1 cut(s) 1462
BstHHI GCGC 2 cut(s) 1054, 1461
BstKTI GATC 5 cut(s) 30, 263, 798, 1164, 1387
BstMAI GTCTC 4 cut(s) 44, 180, 279, 592
BstMBI GATC 5 cut(s) 27, 260, 795, 1161, 1384
BstMWI GCNNNNNNNGC 7 cut(s) 471, 710, 896, 1018, 1058, 1070, 1202
BstNSI RCATGY 1 cut(s) 697
BstSLI GKGCMC 2 cut(s) 715, 761
BstV1I GCAGC 5 cut(s) 331, 483, 886, 1036, 1508
BstV2I GAAGAC 3 cut(s) 287, 1417, 1530
BstX2I RGATCY 1 cut(s) 795
BstYI RGATCY 1 cut(s) 795
BsuRI GGCC 6 cut(s) 358, 418, 465, 845, 1284, 1445
BtgZI GCGATG 1 cut(s) 1111
BtsCI GGATG 5 cut(s) 385, 449, 528, 1024, 1534
BtsIMutI CAGTG 4 cut(s) 513, 812, 873, 1130
BveI ACCTGC 3 cut(s) 28, 754, 1124
Cac8I GCNNGC 4 cut(s) 331, 492, 924, 1473
CaiI CAGNNNCTG 1 cut(s) 515
CfoI GCGC 2 cut(s) 1054, 1461
Cfr13I GGNCC 5 cut(s) 296, 356, 417, 1113, 1282
CseI GACGC 1 cut(s) 818
Csp6I GTAC 3 cut(s) 643, 1262, 1328
CspCI CAANNNNNGTGG 2 cut(s) 705, 740
CviAII CATG 7 cut(s) 169, 302, 694, 766, 1039, 1306, 1352
CviQI GTAC 3 cut(s) 643, 1262, 1328
DdeI CTNAG 9 cut(s) 221, 276, 350, 428, 467, 516, 700, 865, 1231
DpnI GATC 5 cut(s) 29, 262, 797, 1163, 1386
DpnII GATC 5 cut(s) 27, 260, 795, 1161, 1384
DraIII CACNNNGTG 1 cut(s) 655
EaeI YGGCCR 1 cut(s) 843
Eam1104I CTCTTC 4 cut(s) 542, 620, 818, 1350
EarI CTCTTC 4 cut(s) 542, 620, 818, 1350
Ecl136II GAGCTC 1 cut(s) 1021
Eco130I CCWWGG 4 cut(s) 680, 706, 903, 1278
Eco147I AGGCCT 1 cut(s) 1445
Eco24I GRGCYC 1 cut(s) 1023
Eco47I GGWCC 2 cut(s) 296, 1113
Eco47III AGCGCT 1 cut(s) 1460
Eco53kI GAGCTC 1 cut(s) 1021
Eco57I CTGAAG 1 cut(s) 175
EcoICRI GAGCTC 1 cut(s) 1021
EcoO109I RGGNCCY 4 cut(s) 296, 356, 1113, 1282
EcoT14I CCWWGG 4 cut(s) 680, 706, 903, 1278
EcoT22I ATGCAT 1 cut(s) 695
EcoT38I GRGCYC 1 cut(s) 1023
ErhI CCWWGG 4 cut(s) 680, 706, 903, 1278
FaeI CATG 7 cut(s) 172, 305, 697, 769, 1042, 1309, 1355
FalI AAGNNNNNCTT 4 cut(s) 1057, 1089, 1418, 1450
FatI CATG 7 cut(s) 168, 301, 693, 765, 1038, 1305, 1351
Fnu4HI GCNGC 6 cut(s) 345, 472, 900, 1050, 1062, 1497
FokI GGATG 5 cut(s) 392, 456, 515, 1011, 1521
FriOI GRGCYC 1 cut(s) 1023
Fsp4HI GCNGC 6 cut(s) 345, 472, 900, 1050, 1062, 1497
FspBI CTAG 1 cut(s) 47
GlaI GCGC 2 cut(s) 1053, 1460
GluI GCNGC 6 cut(s) 345, 472, 900, 1050, 1062, 1497
GsaI CCCAGC 1 cut(s) 512
HaeII RGCGCY 1 cut(s) 1462
HaeIII GGCC 6 cut(s) 358, 418, 465, 845, 1284, 1445
HapII CCGG 2 cut(s) 816, 1028
HgaI GACGC 1 cut(s) 818
HhaI GCGC 2 cut(s) 1054, 1461
Hin1I GRCGYC 1 cut(s) 829
Hin1II CATG 7 cut(s) 172, 305, 697, 769, 1042, 1309, 1355
Hin6I GCGC 2 cut(s) 1052, 1459
HinP1I GCGC 2 cut(s) 1052, 1459
HincII GTYRAC 1 cut(s) 664
HindII GTYRAC 1 cut(s) 664
HinfI GANTC 5 cut(s) 77, 149, 272, 305, 660
HpaII CCGG 2 cut(s) 816, 1028
HphI GGTGA 2 cut(s) 586, 1103
Hpy166II GTNNAC 4 cut(s) 664, 713, 759, 1341
Hpy188I TCNGA 6 cut(s) 140, 265, 279, 431, 987, 1510
Hpy188III TCNNGA 4 cut(s) 47, 202, 785, 793
Hpy8I GTNNAC 4 cut(s) 664, 713, 759, 1341
HpyAV CCTTC 6 cut(s) 167, 171, 601, 772, 910, 1444
HpyCH4III ACNGT 5 cut(s) 807, 1134, 1266, 1321, 1332
HpyCH4V TGCA 7 cut(s) 347, 693, 713, 749, 759, 953, 1253
HpyF10VI GCNNNNNNNGC 7 cut(s) 471, 710, 896, 1018, 1058, 1070, 1202
HpyF3I CTNAG 9 cut(s) 221, 276, 350, 428, 467, 516, 700, 865, 1231
Hsp92I GRCGYC 1 cut(s) 829
Hsp92II CATG 7 cut(s) 172, 305, 697, 769, 1042, 1309, 1355
HspAI GCGC 2 cut(s) 1052, 1459
Kzo9I GATC 5 cut(s) 27, 260, 795, 1161, 1384
LmnI GCTCC 5 cut(s) 290, 682, 919, 1018, 1026
Lsp1109I GCAGC 5 cut(s) 331, 483, 886, 1036, 1508
LweI GCATC 2 cut(s) 204, 434
MaeI CTAG 1 cut(s) 47
MaeIII GTNAC 3 cut(s) 768, 973, 1291
MalI GATC 5 cut(s) 29, 262, 797, 1163, 1386
MboI GATC 5 cut(s) 27, 260, 795, 1161, 1384
MfeI CAATTG 1 cut(s) 438
MflI RGATCY 1 cut(s) 795
MhlI GDGCHC 4 cut(s) 496, 715, 761, 1023
MlsI TGGCCA 1 cut(s) 845
MluCI AATT 4 cut(s) 438, 609, 750, 1166
MluNI TGGCCA 1 cut(s) 845
MlyI GAGTC 4 cut(s) 86, 281, 314, 669
MmeI TCCRAC 2 cut(s) 766, 853
Mox20I TGGCCA 1 cut(s) 845
Mph1103I ATGCAT 1 cut(s) 695
MroXI GAANNNNTTC 2 cut(s) 390, 1433
MscI TGGCCA 1 cut(s) 845
MseI TTAA 3 cut(s) 111, 156, 1245
MslI CAYNNNNRTG 1 cut(s) 764
Msp20I TGGCCA 1 cut(s) 845
MspI CCGG 2 cut(s) 816, 1028
MunI CAATTG 1 cut(s) 438
MwoI GCNNNNNNNGC 7 cut(s) 471, 710, 896, 1018, 1058, 1070, 1202
NdeII GATC 5 cut(s) 27, 260, 795, 1161, 1384
NlaIII CATG 7 cut(s) 172, 305, 697, 769, 1042, 1309, 1355
NlaIV GGNNCC 2 cut(s) 298, 921
NmeAIII GCCGAG 1 cut(s) 1038
NsiI ATGCAT 1 cut(s) 695
NspI RCATGY 1 cut(s) 697
NspV TTCGAA 1 cut(s) 70
PceI AGGCCT 1 cut(s) 1445
PdmI GAANNNNTTC 2 cut(s) 390, 1433
PfeI GAWTC 1 cut(s) 149
PflFI GACNNNGTC 1 cut(s) 371
PkrI GCNGC 6 cut(s) 346, 473, 901, 1051, 1063, 1498
PleI GAGTC 4 cut(s) 85, 280, 313, 668
PpsI GAGTC 4 cut(s) 85, 280, 313, 668
PpuMI RGGWCCY 2 cut(s) 296, 1113
Psp124BI GAGCTC 1 cut(s) 1023
Psp5II RGGWCCY 2 cut(s) 296, 1113
PspFI CCCAGC 1 cut(s) 508
PspN4I GGNNCC 2 cut(s) 298, 921
PspPI GGNCC 5 cut(s) 296, 356, 417, 1113, 1282
PspPPI RGGWCCY 2 cut(s) 296, 1113
PsrI GAACNNNNNNTAC 4 cut(s) 1025, 1057, 1254, 1286
PstNI CAGNNNCTG 1 cut(s) 515
PsuI RGATCY 1 cut(s) 795
PsyI GACNNNGTC 1 cut(s) 371
RsaI GTAC 3 cut(s) 644, 1263, 1329
RsaNI GTAC 3 cut(s) 643, 1262, 1328
RseI CAYNNNNRTG 1 cut(s) 764
SacI GAGCTC 1 cut(s) 1023
SaqAI TTAA 3 cut(s) 111, 156, 1245
SatI GCNGC 6 cut(s) 345, 472, 900, 1050, 1062, 1497
Sau3AI GATC 5 cut(s) 27, 260, 795, 1161, 1384
Sau96I GGNCC 5 cut(s) 296, 356, 417, 1113, 1282
ScaI AGTACT 1 cut(s) 644
SchI GAGTC 4 cut(s) 86, 281, 314, 669
SduI GDGCHC 4 cut(s) 496, 715, 761, 1023
SfaNI GCATC 2 cut(s) 204, 434
SfuI TTCGAA 1 cut(s) 70
SinI GGWCC 2 cut(s) 296, 1113
SmiMI CAYNNNNRTG 1 cut(s) 764
SmlI CTYRAG 1 cut(s) 791
SmoI CTYRAG 1 cut(s) 791
Sse9I AATT 4 cut(s) 438, 609, 750, 1166
SseBI AGGCCT 1 cut(s) 1445
SsiI CCGC 1 cut(s) 1062
SspMI CTAG 1 cut(s) 47
SstI GAGCTC 1 cut(s) 1023
StuI AGGCCT 1 cut(s) 1445
StyI CCWWGG 4 cut(s) 680, 706, 903, 1278
TaaI ACNGT 5 cut(s) 807, 1134, 1266, 1321, 1332
TaqI TCGA 2 cut(s) 26, 70
TasI AATT 4 cut(s) 438, 609, 750, 1166
TatI WGTACW 2 cut(s) 642, 1327
TauI GCSGC 1 cut(s) 1064
TfiI GAWTC 1 cut(s) 149
Tru1I TTAA 3 cut(s) 111, 156, 1245
Tru9I TTAA 3 cut(s) 111, 156, 1245
TscAI CASTG 4 cut(s) 520, 812, 873, 1137
TseI GCWGC 5 cut(s) 344, 471, 899, 1049, 1496
TspDTI ATGAA 8 cut(s) 17, 399, 529, 754, 1033, 1114, 1294, 1340
TspRI CASTG 4 cut(s) 520, 812, 873, 1137
Tth111I GACNNNGTC 1 cut(s) 371
VneI GTGCAC 2 cut(s) 711, 757
VpaK11BI GGWCC 2 cut(s) 296, 1113
XapI RAATTY 2 cut(s) 609, 1166
XbaI TCTAGA 1 cut(s) 46
XceI RCATGY 1 cut(s) 697
XmnI GAANNNNTTC 2 cut(s) 390, 1433
XspI CTAG 1 cut(s) 47
ZrmI AGTACT 1 cut(s) 644
Zsp2I ATGCAT 1 cut(s) 695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.