Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0015055

Physical Location & Seq

Genomic Coordinates Forward (+)

4284837 .. 4285304

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0059900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGAAGTTTACCGTAGAGGAAGCAAAGGCGTTTGTTCTCGGAATCATTGTAAAACTTGGTTGGGTTCCTGATCCTCGTGATCAAGAAATGGCTCAACCAGCAGCAGCAGCAGCAGCAGCGCCTAGACAACCCTACCACCTGCTAGATTATTGGGCAAAGATACTTGTTGTATTCTGTTCGGCATCCGCTATTGACATGGCTCTCCTCTCCGCCCAAGTCCACTCTCAGCTCCATGCAATCTTTTGCTTCCTCGGATTAACCATCATACTTGCCTTTACTTGCTTCTTTGTAGGCAAATGCATTCACTCCAACTTTGAACAAGCAGCTCTGGTGCTCCAGCGATTCGGCCTTTTCTTTGGAGTCACTGCAATCTTCATATCCATCACCATTCCATTTCCTTTGTGGTTCAAATGTGTCACCTGCTTCATCTATGTGCTATGCTGGCTCACAATCTTGATTTGTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005253 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006873 GO:0006950 GO:0006979 GO:0008150 GO:0008308 GO:0008509 GO:0009270 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010035 GO:0010037 GO:0010118 GO:0010119 GO:0010193 GO:0015075 GO:0015103 GO:0015267 GO:0015318 GO:0015698 GO:0015711 GO:0016020 GO:0016021 GO:0019725 GO:0019899 GO:0019900 GO:0019901 GO:0019902 GO:0019903 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0030104 GO:0031224 GO:0032501 GO:0033993 GO:0034220 GO:0042221 GO:0042493 GO:0042592 GO:0044425 GO:0044464 GO:0046677 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050878 GO:0050891 GO:0050896 GO:0051179 GO:0051234 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071702 GO:0071944 GO:0072347 GO:0090332 GO:0097305 GO:0098656 GO:1901700 GO:1902456

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SLAC1

Protein Analysis

155

Amino Acids

17.31

Weight (kDa)

7.57

Isoelectric Point (pI)

28.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12480
fragaria_vesca	FvH4_5g01000
malus_domestica	MD04G1076000.v1.1
prunus_persica	Prupe.5G083800_v2.0.a1
pyrus_communis	pycom04g06690
rosa_chinensis	RchiOBHm_Chr7g0200381
rosa_laevigata	RLG00000003731
rosa_multiflora	Rmu_sc0005211.1_g000002 Rmu_sc0019054.1_g000003
rosa_roxburghii	Rroxscaffold_3G00256050
rosa_rugosa	Rorug07G0059900
rosa_samantha	Rh7AG185100 Rh7BG188200 Rh7CG195400 Rh7DG189200
rosa_wichuraiana	Rw7G016220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	147, 428
Acc36I	ACCTGC	2 cut(s)	147, 428
AciI	CCGC	2 cut(s)	186, 210
AclWI	GGATC	1 cut(s)	65
AgsI	TTSAA	2 cut(s)	317, 409
AluBI	AGCT	2 cut(s)	229, 326
AluI	AGCT	2 cut(s)	229, 326
Alw21I	GWGCWC	1 cut(s)	336
AlwI	GGATC	1 cut(s)	65
AoxI	GGCC	1 cut(s)	346
ApeKI	GCWGC	7 cut(s)	101, 104, 107, 110, 113, 116, 323
AspLEI	GCGC	1 cut(s)	121
AsuHPI	GGTGA	2 cut(s)	376, 409
BauI	CACGAG	1 cut(s)	75
Bbv12I	GWGCWC	1 cut(s)	336
BbvI	GCAGC	7 cut(s)	113, 116, 119, 122, 125, 128, 335
BccI	CCATC	2 cut(s)	269, 389
BclI	TGATCA	1 cut(s)	79
BfaI	CTAG	2 cut(s)	123, 143
BfoI	RGCGCY	1 cut(s)	122
BfuAI	ACCTGC	2 cut(s)	147, 428
BisI	GCNGC	7 cut(s)	102, 105, 108, 111, 114, 117, 324
BlsI	GCNGC	7 cut(s)	103, 106, 109, 112, 115, 118, 325
BmiI	GGNNCC	1 cut(s)	66
BmsI	GCATC	1 cut(s)	191
BpmI	CTGGAG	1 cut(s)	320
BsaJI	CCNNGG	1 cut(s)	250
BseDI	CCNNGG	1 cut(s)	250
BseGI	GGATG	1 cut(s)	182
BseMII	CTCAG	1 cut(s)	239
BseRI	GAGGAG	1 cut(s)	194
BseXI	GCAGC	7 cut(s)	113, 116, 119, 122, 125, 128, 335
BshFI	GGCC	1 cut(s)	348
BsiHKAI	GWGCWC	1 cut(s)	336
BsmI	GAATGC	1 cut(s)	300
BsnI	GGCC	1 cut(s)	348
Bsp1286I	GDGCHC	1 cut(s)	336
Bsp143I	GATC	2 cut(s)	70, 79
BspACI	CCGC	2 cut(s)	186, 210
BspANI	GGCC	1 cut(s)	348
BspCNI	CTCAG	1 cut(s)	238
BspLI	GGNNCC	1 cut(s)	66
BspMI	ACCTGC	2 cut(s)	147, 428
BspPI	GGATC	1 cut(s)	65
BssECI	CCNNGG	1 cut(s)	250
BssMI	GATC	2 cut(s)	70, 79
BssSI	CACGAG	1 cut(s)	75
Bst2BI	CACGAG	1 cut(s)	75
Bst4CI	ACNGT	1 cut(s)	13
BstC8I	GCNNGC	1 cut(s)	443
BstDEI	CTNAG	1 cut(s)	225
BstF5I	GGATG	1 cut(s)	182
BstH2I	RGCGCY	1 cut(s)	122
BstHHI	GCGC	1 cut(s)	121
BstKTI	GATC	2 cut(s)	73, 82
BstMBI	GATC	2 cut(s)	70, 79
BstMWI	GCNNNNNNNGC	6 cut(s)	98, 107, 110, 113, 116, 442
BstV1I	GCAGC	7 cut(s)	113, 116, 119, 122, 125, 128, 335
BsuRI	GGCC	1 cut(s)	348
BtsCI	GGATG	1 cut(s)	182
BtsI	GCAGTG	1 cut(s)	363
BtsIMutI	CAGTG	1 cut(s)	363
BveI	ACCTGC	2 cut(s)	147, 428
Cac8I	GCNNGC	1 cut(s)	443
CfoI	GCGC	1 cut(s)	121
CviAII	CATG	2 cut(s)	196, 233
CviJI	RGCY	6 cut(s)	92, 200, 229, 326, 348, 445
CviKI_1	RGCY	6 cut(s)	92, 200, 229, 326, 348, 445
DdeI	CTNAG	1 cut(s)	225
DpnI	GATC	2 cut(s)	72, 81
DpnII	GATC	2 cut(s)	70, 79
EciI	GGCGGA	1 cut(s)	199
EcoT22I	ATGCAT	1 cut(s)	302
FaeI	CATG	2 cut(s)	199, 236
FaiI	YATR	6 cut(s)	197, 234, 266, 377, 432, 439
FatI	CATG	2 cut(s)	195, 232
FbaI	TGATCA	1 cut(s)	79
Fnu4HI	GCNGC	7 cut(s)	102, 105, 108, 111, 114, 117, 324
FokI	GGATG	1 cut(s)	169
Fsp4HI	GCNGC	7 cut(s)	102, 105, 108, 111, 114, 117, 324
FspBI	CTAG	2 cut(s)	123, 143
GlaI	GCGC	1 cut(s)	120
GluI	GCNGC	7 cut(s)	102, 105, 108, 111, 114, 117, 324
GsuI	CTGGAG	1 cut(s)	320
HaeII	RGCGCY	1 cut(s)	122
HaeIII	GGCC	1 cut(s)	348
HhaI	GCGC	1 cut(s)	121
Hin1II	CATG	2 cut(s)	199, 236
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HinfI	GANTC	3 cut(s)	42, 342, 360
HphI	GGTGA	2 cut(s)	376, 409
Hpy166II	GTNNAC	2 cut(s)	9, 220
Hpy188I	TCNGA	2 cut(s)	41, 254
Hpy188III	TCNNGA	4 cut(s)	68, 77, 83, 454
Hpy8I	GTNNAC	2 cut(s)	9, 220
HpyCH4III	ACNGT	1 cut(s)	13
HpyCH4V	TGCA	3 cut(s)	236, 300, 368
HpyF10VI	GCNNNNNNNGC	6 cut(s)	98, 107, 110, 113, 116, 442
HpyF3I	CTNAG	1 cut(s)	225
Hsp92II	CATG	2 cut(s)	199, 236
HspAI	GCGC	1 cut(s)	119
Ksp22I	TGATCA	1 cut(s)	79
Kzo9I	GATC	2 cut(s)	70, 79
LmnI	GCTCC	2 cut(s)	234, 339
LpnPI	CCDG	7 cut(s)	81, 111, 152, 314, 350, 427, 433
Lsp1109I	GCAGC	7 cut(s)	113, 116, 119, 122, 125, 128, 335
LweI	GCATC	1 cut(s)	191
MaeI	CTAG	2 cut(s)	123, 143
MaeIII	GTNAC	2 cut(s)	361, 415
MalI	GATC	2 cut(s)	72, 81
MboI	GATC	2 cut(s)	70, 79
MboII	GAAGA	1 cut(s)	364
MhlI	GDGCHC	1 cut(s)	336
MluCI	AATT	1 cut(s)	463
MlyI	GAGTC	1 cut(s)	369
MmeI	TCCRAC	1 cut(s)	333
MnlI	CCTC	4 cut(s)	10, 84, 215, 260
Mph1103I	ATGCAT	1 cut(s)	302
MseI	TTAA	2 cut(s)	257, 466
MslI	CAYNNNNRTG	1 cut(s)	431
Mva1269I	GAATGC	1 cut(s)	300
MwoI	GCNNNNNNNGC	6 cut(s)	98, 107, 110, 113, 116, 442
NdeII	GATC	2 cut(s)	70, 79
NlaIII	CATG	2 cut(s)	199, 236
NlaIV	GGNNCC	1 cut(s)	66
NmuCI	GTSAC	2 cut(s)	361, 415
NsiI	ATGCAT	1 cut(s)	302
PaqCI	CACCTGC	2 cut(s)	147, 428
PctI	GAATGC	1 cut(s)	300
PfeI	GAWTC	2 cut(s)	42, 342
PkrI	GCNGC	7 cut(s)	103, 106, 109, 112, 115, 118, 325
PleI	GAGTC	1 cut(s)	368
PpsI	GAGTC	1 cut(s)	368
PspN4I	GGNNCC	1 cut(s)	66
RseI	CAYNNNNRTG	1 cut(s)	431
SaqAI	TTAA	2 cut(s)	257, 466
SatI	GCNGC	7 cut(s)	102, 105, 108, 111, 114, 117, 324
Sau3AI	GATC	2 cut(s)	70, 79
SchI	GAGTC	1 cut(s)	369
SduI	GDGCHC	1 cut(s)	336
SetI	ASST	4 cut(s)	141, 231, 328, 422
SfaNI	GCATC	1 cut(s)	191
SmiMI	CAYNNNNRTG	1 cut(s)	431
Sse9I	AATT	1 cut(s)	463
SsiI	CCGC	2 cut(s)	186, 210
SspMI	CTAG	2 cut(s)	123, 143
TaaI	ACNGT	1 cut(s)	13
TasI	AATT	1 cut(s)	463
TfiI	GAWTC	2 cut(s)	42, 342
Tru1I	TTAA	2 cut(s)	257, 466
Tru9I	TTAA	2 cut(s)	257, 466
TscAI	CASTG	1 cut(s)	370
TseFI	GTSAC	2 cut(s)	361, 415
TseI	GCWGC	7 cut(s)	101, 104, 107, 110, 113, 116, 323
Tsp45I	GTSAC	2 cut(s)	361, 415
TspDTI	ATGAA	3 cut(s)	17, 364, 415
TspRI	CASTG	1 cut(s)	370
XcmI	CCANNNNNNNNNTGG	1 cut(s)	399
XspI	CTAG	2 cut(s)	123, 143
Zsp2I	ATGCAT	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.