Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005211.1

Orthogroup ID

OG0015055

Physical Location & Seq

Genomic Coordinates Reverse (-)

12846 .. 14722

Gene Structure 1877 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005211.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

atggagtctcagaagactgatggagcaggacttgatgagtctgttgatacaagtgttcctgctggtagatactttgctgcacttagagggcctgaacttgaccaagtcaaggatgatgaagatattctcctcccaaaagatgagcaatggccctttctcctcagatttccaattggatgctttggtatttgccttggccttagcagccaagcagtcttatggcatgctcttgcgacaagcccagccactgagtttcttcacatcccactcttcataaaccttgccctctggcttttagcattagcagtcctattttgtgtctccttcacctatattctcaaaattctcttctactttgaagcagtcaaaagagagtacttccaccctgtgagagtcaacttcttctttgctccttgggttgtatgcatgttcttagcccttggtgcaccaccaactttgttccctaataaactccaacctgcaatttggtgcaccttcatgttaccctactttcttctggaactcaagatctatggacagtggctttcgggtgggaagaggcgtctttgtaaggtggccaatccatcttctcatctctcagtggttggaaactttgttggggcaattttggctgccaaggttgggtggaaggagcctgccaagttcttgtgggcagtaggctttgcacattactttgtggtctttgttactttgtatcagagattgccaacaagtgaagcgttgccgagggagctccatccggtgtattccatgtttattgctgccccgtcagccgcaagtatggcttggcaggacatttatggtgatttcaatgaggtgtcgaggacctgctacttcatcgcactgtttctctatatttcactggttgtgaggatcaaattcttcacagggtttagattttcggtggcttggtgggcatacacctttccaatgacaacattctcagttgccaccattaagtatgcagaagaagtaccgtcagttctaaccaagagcctcgcagttactctttctttcatgtcatcaacaacggtgtctgtactgtttgtgtccactcttcttcatgcctttgtttggcacacattgtttcctaatgatcttgccatagccataacaaaccgaagacttggcaagttcaaaaaggcctatgatataaagcgctggacaaagcaggctctaaccaagaacaacatagcagcaaaggttggagggaaagaagagagcttatatccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005253 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006873 GO:0006950 GO:0006979 GO:0008150 GO:0008308 GO:0008509 GO:0009270 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010035 GO:0010037 GO:0010118 GO:0010119 GO:0010193 GO:0015075 GO:0015103 GO:0015267 GO:0015318 GO:0015698 GO:0015711 GO:0016020 GO:0016021 GO:0019725 GO:0019899 GO:0019900 GO:0019901 GO:0019902 GO:0019903 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0030104 GO:0031224 GO:0032501 GO:0033993 GO:0034220 GO:0042221 GO:0042493 GO:0042592 GO:0044425 GO:0044464 GO:0046677 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050878 GO:0050891 GO:0050896 GO:0051179 GO:0051234 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071702 GO:0071944 GO:0072347 GO:0090332 GO:0097305 GO:0098656 GO:1901700 GO:1902456

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SLAC1

Protein Analysis

418

Amino Acids

47.29

Weight (kDa)

9.08

Isoelectric Point (pI)

44.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12480
fragaria_vesca	FvH4_5g01000
malus_domestica	MD04G1076000.v1.1
prunus_persica	Prupe.5G083800_v2.0.a1
pyrus_communis	pycom04g06690
rosa_chinensis	RchiOBHm_Chr7g0200381
rosa_laevigata	RLG00000003731
rosa_multiflora	Rmu_sc0005211.1_g000002 Rmu_sc0019054.1_g000003
rosa_roxburghii	Rroxscaffold_3G00256050
rosa_rugosa	Rorug07G0059900
rosa_samantha	Rh7AG185100 Rh7BG188200 Rh7CG195400 Rh7DG189200
rosa_wichuraiana	Rw7G016220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	487, 857
AciI	CCGC	1 cut(s)	795
AclWI	GGATC	1 cut(s)	902
AcoI	YGGCCR	1 cut(s)	576
AcsI	RAATTY	2 cut(s)	342, 899
AcyI	GRCGYC	1 cut(s)	562
AdeI	CACNNNGTG	1 cut(s)	388
AfaI	GTAC	3 cut(s)	377, 996, 1062
AfeI	AGCGCT	1 cut(s)	1181
AfiI	CCNNNNNNNGG	3 cut(s)	109, 642, 1095
AgsI	TTSAA	3 cut(s)	359, 832, 1159
AluBI	AGCT	2 cut(s)	754, 1245
AluI	AGCT	2 cut(s)	754, 1245
Alw21I	GWGCWC	3 cut(s)	448, 494, 756
Alw26I	GTCTC	2 cut(s)	12, 325
Alw44I	GTGCAC	2 cut(s)	444, 490
AlwI	GGATC	1 cut(s)	902
AlwNI	CAGNNNCTG	1 cut(s)	248
Aor51HI	AGCGCT	1 cut(s)	1181
AoxI	GGCC	5 cut(s)	89, 149, 196, 576, 1164
ApaLI	GTGCAC	2 cut(s)	444, 490
ApeKI	GCWGC	5 cut(s)	77, 204, 632, 782, 1217
ApoI	RAATTY	2 cut(s)	342, 899
Asp700I	GAANNNNTTC	1 cut(s)	123
AspLEI	GCGC	1 cut(s)	1182
AspS9I	GGNCC	3 cut(s)	89, 150, 846
AsuHPI	GGTGA	2 cut(s)	319, 836
AvaII	GGWCC	1 cut(s)	846
BaeGI	GKGCMC	2 cut(s)	448, 494
BaeI	ACNNNNGTAYC	2 cut(s)	39, 72
BalI	TGGCCA	1 cut(s)	578
BanII	GRGCYC	1 cut(s)	756
BbsI	GAAGAC	2 cut(s)	20, 1150
Bbv12I	GWGCWC	3 cut(s)	448, 494, 756
BbvI	GCAGC	5 cut(s)	64, 216, 619, 769, 1229
BccI	CCATC	3 cut(s)	14, 592, 765
BcoDI	GTCTC	2 cut(s)	12, 325
BfoI	RGCGCY	1 cut(s)	1183
BfuAI	ACCTGC	2 cut(s)	487, 857
BglII	AGATCT	1 cut(s)	528
BisI	GCNGC	6 cut(s)	78, 205, 633, 783, 795, 1218
BlsI	GCNGC	6 cut(s)	79, 206, 634, 784, 796, 1219
BmcAI	AGTACT	1 cut(s)	377
Bme18I	GGWCC	1 cut(s)	846
BmgT120I	GGNCC	3 cut(s)	89, 150, 846
BmiI	GGNNCC	1 cut(s)	654
BmsI	GCATC	1 cut(s)	167
BpiI	GAAGAC	2 cut(s)	20, 1150
Bpu10I	CCTNAGC	1 cut(s)	200
BpuEI	CTTGAG	1 cut(s)	509
BsaHI	GRCGYC	1 cut(s)	562
BsaJI	CCNNGG	5 cut(s)	193, 413, 439, 636, 746
BsaWI	WCCGGW	1 cut(s)	760
Bsc4I	CCNNNNNNNGG	3 cut(s)	109, 642, 1095
Bse1I	ACTGG	1 cut(s)	888
Bse3DI	GCAATG	1 cut(s)	152
BseDI	CCNNGG	5 cut(s)	193, 413, 439, 636, 746
BseGI	GGATG	4 cut(s)	118, 182, 261, 757
BseLI	CCNNNNNNNGG	3 cut(s)	109, 642, 1095
BseMI	GCAATG	1 cut(s)	152
BseMII	CTCAG	5 cut(s)	23, 175, 240, 612, 978
BseNI	ACTGG	1 cut(s)	888
BseRI	GAGGAG	2 cut(s)	119, 149
BseSI	GKGCMC	2 cut(s)	448, 494
BseXI	GCAGC	5 cut(s)	64, 216, 619, 769, 1229
BseYI	CCCAGC	1 cut(s)	241
BsgI	GTGCAG	1 cut(s)	63
BshFI	GGCC	5 cut(s)	91, 151, 198, 578, 1166
BsiHKAI	GWGCWC	3 cut(s)	448, 494, 756
BsiSI	CCGG	1 cut(s)	761
BslI	CCNNNNNNNGG	3 cut(s)	109, 642, 1095
BsmAI	GTCTC	2 cut(s)	12, 325
BsnI	GGCC	5 cut(s)	91, 151, 198, 578, 1166
Bsp1286I	GDGCHC	3 cut(s)	448, 494, 756
Bsp143I	GATC	3 cut(s)	528, 894, 1117
BspACI	CCGC	1 cut(s)	795
BspANI	GGCC	5 cut(s)	91, 151, 198, 578, 1166
BspCNI	CTCAG	5 cut(s)	22, 174, 241, 611, 977
BspLI	GGNNCC	1 cut(s)	654
BspMI	ACCTGC	2 cut(s)	487, 857
BspPI	GGATC	1 cut(s)	902
BsrDI	GCAATG	1 cut(s)	152
BsrI	ACTGG	1 cut(s)	888
BssECI	CCNNGG	5 cut(s)	193, 413, 439, 636, 746
BssMI	GATC	3 cut(s)	528, 894, 1117
BssNI	GRCGYC	1 cut(s)	562
BssT1I	CCWWGG	4 cut(s)	193, 413, 439, 636
Bst4CI	ACNGT	5 cut(s)	540, 867, 999, 1054, 1065
Bst6I	CTCTTC	5 cut(s)	275, 353, 551, 1083, 1233
BstACI	GRCGYC	1 cut(s)	562
BstC8I	GCNNGC	3 cut(s)	225, 657, 1194
BstDEI	CTNAG	8 cut(s)	9, 83, 161, 200, 249, 433, 598, 964
BstF5I	GGATG	4 cut(s)	118, 182, 261, 757
BstH2I	RGCGCY	1 cut(s)	1183
BstHHI	GCGC	1 cut(s)	1182
BstKTI	GATC	3 cut(s)	531, 897, 1120
BstMAI	GTCTC	2 cut(s)	12, 325
BstMBI	GATC	3 cut(s)	528, 894, 1117
BstMWI	GCNNNNNNNGC	7 cut(s)	204, 443, 629, 751, 791, 803, 935
BstNSI	RCATGY	2 cut(s)	227, 430
BstSLI	GKGCMC	2 cut(s)	448, 494
BstV1I	GCAGC	5 cut(s)	64, 216, 619, 769, 1229
BstV2I	GAAGAC	2 cut(s)	20, 1150
BstX2I	RGATCY	1 cut(s)	528
BstYI	RGATCY	1 cut(s)	528
BsuRI	GGCC	5 cut(s)	91, 151, 198, 578, 1166
BtgZI	GCGATG	1 cut(s)	844
BtsCI	GGATG	4 cut(s)	118, 182, 261, 757
BtsIMutI	CAGTG	5 cut(s)	246, 545, 606, 863, 881
BveI	ACCTGC	2 cut(s)	487, 857
Cac8I	GCNNGC	3 cut(s)	225, 657, 1194
CaiI	CAGNNNCTG	1 cut(s)	248
CfoI	GCGC	1 cut(s)	1182
Cfr13I	GGNCC	3 cut(s)	89, 150, 846
CseI	GACGC	1 cut(s)	551
Csp6I	GTAC	3 cut(s)	376, 995, 1061
CspCI	CAANNNNNGTGG	2 cut(s)	438, 473
CviAII	CATG	6 cut(s)	224, 427, 499, 772, 1039, 1085
CviQI	GTAC	3 cut(s)	376, 995, 1061
DdeI	CTNAG	8 cut(s)	9, 83, 161, 200, 249, 433, 598, 964
DpnI	GATC	3 cut(s)	530, 896, 1119
DpnII	GATC	3 cut(s)	528, 894, 1117
DraIII	CACNNNGTG	1 cut(s)	388
EaeI	YGGCCR	1 cut(s)	576
Eam1104I	CTCTTC	5 cut(s)	275, 353, 551, 1083, 1233
EarI	CTCTTC	5 cut(s)	275, 353, 551, 1083, 1233
Ecl136II	GAGCTC	1 cut(s)	754
Eco130I	CCWWGG	4 cut(s)	193, 413, 439, 636
Eco147I	AGGCCT	1 cut(s)	1166
Eco24I	GRGCYC	1 cut(s)	756
Eco47I	GGWCC	1 cut(s)	846
Eco47III	AGCGCT	1 cut(s)	1181
Eco53kI	GAGCTC	1 cut(s)	754
EcoICRI	GAGCTC	1 cut(s)	754
EcoO109I	RGGNCCY	2 cut(s)	89, 846
EcoT14I	CCWWGG	4 cut(s)	193, 413, 439, 636
EcoT22I	ATGCAT	1 cut(s)	428
EcoT38I	GRGCYC	1 cut(s)	756
ErhI	CCWWGG	4 cut(s)	193, 413, 439, 636
FaeI	CATG	6 cut(s)	227, 430, 502, 775, 1042, 1088
FalI	AAGNNNNNCTT	2 cut(s)	790, 822
FatI	CATG	6 cut(s)	223, 426, 498, 771, 1038, 1084
Fnu4HI	GCNGC	6 cut(s)	78, 205, 633, 783, 795, 1218
FokI	GGATG	4 cut(s)	125, 189, 248, 744
FriOI	GRGCYC	1 cut(s)	756
Fsp4HI	GCNGC	6 cut(s)	78, 205, 633, 783, 795, 1218
GlaI	GCGC	1 cut(s)	1181
GluI	GCNGC	6 cut(s)	78, 205, 633, 783, 795, 1218
GsaI	CCCAGC	1 cut(s)	245
HaeII	RGCGCY	1 cut(s)	1183
HaeIII	GGCC	5 cut(s)	91, 151, 198, 578, 1166
HapII	CCGG	1 cut(s)	761
HgaI	GACGC	1 cut(s)	551
HhaI	GCGC	1 cut(s)	1182
Hin1I	GRCGYC	1 cut(s)	562
Hin1II	CATG	6 cut(s)	227, 430, 502, 775, 1042, 1088
Hin6I	GCGC	1 cut(s)	1180
HinP1I	GCGC	1 cut(s)	1180
HincII	GTYRAC	1 cut(s)	397
HindII	GTYRAC	1 cut(s)	397
HinfI	GANTC	3 cut(s)	5, 38, 393
HpaII	CCGG	1 cut(s)	761
HphI	GGTGA	2 cut(s)	319, 836
Hpy166II	GTNNAC	4 cut(s)	397, 446, 492, 1074
Hpy188I	TCNGA	3 cut(s)	12, 164, 720
Hpy188III	TCNNGA	2 cut(s)	518, 526
Hpy8I	GTNNAC	4 cut(s)	397, 446, 492, 1074
HpyAV	CCTTC	3 cut(s)	334, 505, 643
HpyCH4III	ACNGT	5 cut(s)	540, 867, 999, 1054, 1065
HpyCH4V	TGCA	7 cut(s)	80, 426, 446, 482, 492, 686, 986
HpyF10VI	GCNNNNNNNGC	7 cut(s)	204, 443, 629, 751, 791, 803, 935
HpyF3I	CTNAG	8 cut(s)	9, 83, 161, 200, 249, 433, 598, 964
Hsp92I	GRCGYC	1 cut(s)	562
Hsp92II	CATG	6 cut(s)	227, 430, 502, 775, 1042, 1088
HspAI	GCGC	1 cut(s)	1180
Kzo9I	GATC	3 cut(s)	528, 894, 1117
LmnI	GCTCC	5 cut(s)	23, 415, 652, 751, 759
Lsp1109I	GCAGC	5 cut(s)	64, 216, 619, 769, 1229
LweI	GCATC	1 cut(s)	167
MaeIII	GTNAC	3 cut(s)	501, 706, 1024
MalI	GATC	3 cut(s)	530, 896, 1119
MboI	GATC	3 cut(s)	528, 894, 1117
MfeI	CAATTG	1 cut(s)	171
MflI	RGATCY	1 cut(s)	528
MhlI	GDGCHC	3 cut(s)	448, 494, 756
MlsI	TGGCCA	1 cut(s)	578
MluCI	AATT	5 cut(s)	171, 342, 483, 624, 899
MluNI	TGGCCA	1 cut(s)	578
MlyI	GAGTC	3 cut(s)	14, 47, 402
MmeI	TCCRAC	3 cut(s)	499, 586, 1207
Mox20I	TGGCCA	1 cut(s)	578
Mph1103I	ATGCAT	1 cut(s)	428
MroXI	GAANNNNTTC	1 cut(s)	123
MscI	TGGCCA	1 cut(s)	578
MseI	TTAA	1 cut(s)	978
MslI	CAYNNNNRTG	1 cut(s)	497
Msp20I	TGGCCA	1 cut(s)	578
MspI	CCGG	1 cut(s)	761
MunI	CAATTG	1 cut(s)	171
MwoI	GCNNNNNNNGC	7 cut(s)	204, 443, 629, 751, 791, 803, 935
NdeII	GATC	3 cut(s)	528, 894, 1117
NlaIII	CATG	6 cut(s)	227, 430, 502, 775, 1042, 1088
NlaIV	GGNNCC	1 cut(s)	654
NmeAIII	GCCGAG	1 cut(s)	771
NsiI	ATGCAT	1 cut(s)	428
NspI	RCATGY	2 cut(s)	227, 430
PaeI	GCATGC	1 cut(s)	227
PceI	AGGCCT	1 cut(s)	1166
PdmI	GAANNNNTTC	1 cut(s)	123
PflFI	GACNNNGTC	1 cut(s)	104
PkrI	GCNGC	6 cut(s)	79, 206, 634, 784, 796, 1219
PleI	GAGTC	3 cut(s)	13, 46, 401
PpsI	GAGTC	3 cut(s)	13, 46, 401
PpuMI	RGGWCCY	1 cut(s)	846
Psp124BI	GAGCTC	1 cut(s)	756
Psp5II	RGGWCCY	1 cut(s)	846
PspFI	CCCAGC	1 cut(s)	241
PspN4I	GGNNCC	1 cut(s)	654
PspPI	GGNCC	3 cut(s)	89, 150, 846
PspPPI	RGGWCCY	1 cut(s)	846
PsrI	GAACNNNNNNTAC	2 cut(s)	987, 1019
PstNI	CAGNNNCTG	1 cut(s)	248
PsuI	RGATCY	1 cut(s)	528
PsyI	GACNNNGTC	1 cut(s)	104
RsaI	GTAC	3 cut(s)	377, 996, 1062
RsaNI	GTAC	3 cut(s)	376, 995, 1061
RseI	CAYNNNNRTG	1 cut(s)	497
SacI	GAGCTC	1 cut(s)	756
SaqAI	TTAA	1 cut(s)	978
SatI	GCNGC	6 cut(s)	78, 205, 633, 783, 795, 1218
Sau3AI	GATC	3 cut(s)	528, 894, 1117
Sau96I	GGNCC	3 cut(s)	89, 150, 846
ScaI	AGTACT	1 cut(s)	377
SchI	GAGTC	3 cut(s)	14, 47, 402
SduI	GDGCHC	3 cut(s)	448, 494, 756
SfaNI	GCATC	1 cut(s)	167
SinI	GGWCC	1 cut(s)	846
SmiMI	CAYNNNNRTG	1 cut(s)	497
SmlI	CTYRAG	1 cut(s)	524
SmoI	CTYRAG	1 cut(s)	524
SphI	GCATGC	1 cut(s)	227
Sse9I	AATT	5 cut(s)	171, 342, 483, 624, 899
SseBI	AGGCCT	1 cut(s)	1166
SsiI	CCGC	1 cut(s)	795
SstI	GAGCTC	1 cut(s)	756
StuI	AGGCCT	1 cut(s)	1166
StyI	CCWWGG	4 cut(s)	193, 413, 439, 636
TaaI	ACNGT	5 cut(s)	540, 867, 999, 1054, 1065
TaqI	TCGA	1 cut(s)	842
TasI	AATT	5 cut(s)	171, 342, 483, 624, 899
TatI	WGTACW	2 cut(s)	375, 1060
TauI	GCSGC	1 cut(s)	797
Tru1I	TTAA	1 cut(s)	978
Tru9I	TTAA	1 cut(s)	978
TscAI	CASTG	5 cut(s)	253, 545, 606, 870, 888
TseI	GCWGC	5 cut(s)	77, 204, 632, 782, 1217
TspDTI	ATGAA	6 cut(s)	132, 262, 487, 847, 1027, 1073
TspRI	CASTG	5 cut(s)	253, 545, 606, 870, 888
Tth111I	GACNNNGTC	1 cut(s)	104
VneI	GTGCAC	2 cut(s)	444, 490
VpaK11BI	GGWCC	1 cut(s)	846
XapI	RAATTY	2 cut(s)	342, 899
XceI	RCATGY	2 cut(s)	227, 430
XmnI	GAANNNNTTC	1 cut(s)	123
ZrmI	AGTACT	1 cut(s)	377
Zsp2I	ATGCAT	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.