FvH4_5g03740

intracellular protein transport protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
2200963 .. 2205145
4183 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g03740.t4

Sequence Viewer

Length: 2079 bp
ATGAAAGGAGGAGGAGAAAGTAGGGGTGAAGAAGCAGAAAAGGAGGAAAATTTGGGTTTGGGGGAAAAGTTGGCAAGAAGGAGAAGGGTATTGATTAGAAAAAGCAGCAGAGGTGGCCCATCCACTCCAGTGTTGTCCTCATGGAGTCTCTACCCTTTTGGCCAGGAACAACAACACCAACCCATCATTGAAGACGCTCTCTTAACTGCTGCTACTGATCACACTTGTGTCTCTGCTAGAAAGCTGGGAGCTGCTCTTTGGGAGTTTCAGAACTACTTCCCACTCTCAAAGATGCACAGAGGCAATGGTGTTCCTCCACCGCCTAGGCAGCAGCGCCGCCACCACCACCTCGGCAAGGACAAGGGCACTCTTGACCTTTCCAACTTTTTGGCTGATAATTGTCCCAGTTCTCCTGACCAGCCAGCAAGTGCAAGCAGTTTAACGAGGCATATAGCTGCGTCACTGATGCAACATCACCGATCAATTGGAAGGAATAACAATCACCTTTTACAACCTGTATCTCCTGCAAGCTATGGTAGTTCAATGGAGGTGGCACCTTATAACCCTGCAGTTACTCCCACCAGTTCTTTAGACTTTAAGGGAAGAATTGGTGAGTCCCATTATAATCTCAAAACATCAACAGAATTGCTGAAAGTCTTGAACCGGATTTGGAGTTTGGAGGAACAGCATACATCCAATATAGCACTGATAAAAGCACTGAAAGCAGAGTTGGATCATGCCCGTGTCAAGATCAAAGATTTGGTTCGGGTACGACAAGCTGATAGACATGAGCTAGACAATTTGATGAAGCAAATTGGAGAAGATAAACTAGTTAGGAAGAGCAAAGAACAGGATCGGATTCATGCTGCAGTTCGGTCTGTGAGGGATGAACTAGAAGATGAGAGAAGGTTAAGAAAACGATCAGAAAGCCTACACAGAAAGTTAGCGCGAGACCTCTCTGAGGTGAAATCTTCTCTTTCCAATTCCCTGAGAGAGCTTGAAAGTGAGAGGAAATCGAGGAAGTTGTTGGAAGACCTATGTGATGAGTTTGCTAAAGGCATAAAAGACTATGAACAAGAGGTGCATTTTTTGAAACAGAAATCTGACAAGGATCGGACTGGAAACTCTGACCGTGATCGGTTGATTCTGCATGTATCTGAATCATGGCTGGATGAACGGATGCAGATGCAGCTAGAACAAACTGAGTGTGGTCTTCCAGAGAGGAATTCAGTAGTGGACAAACTAAGCCTTGAAATAGAGACTTTCCTTCGAGCTAAACATATGAATAACACTCTTAAGAATACTGAAAGTCTGTTGCCAAGGGATCGTCGAAAGAATTCAATGGAATCTTTTCCGATTAATGAGGTTGTGAGTGCCCCTCAAGATGCAGGTGATGAAGAAGATTCTTTAGGCAGTGACTCACATTGTTTCGAGCTCAATAAACCGAGCAACAGTGACTTCAAATTGCAAGTGGAGGAAGCTGTAGAGAATGGTATTGATGAAAAGGTGAAGTCAGATCACTCGAAGAAAAAACCTGCCTCTTCTGACAGAGTAAGAAGCCGCACTCCATCTAGCTTGCAAGTTAAGTTTGAAGAACAGATGGCTTGGGCCTTGTCATCTAGTGAAAATATGAAATCCCAAGTGGTAAATTCAGAGCAGGGGAAAGCTGAAGAAGTGAAGCAAACTGAAATAAGCATGTCTCAAAAATCTGAACATTGTGAAGCCACAGAAGATGAAACTTACAAAAAGGGCAATAAACAAGATGAAAGACATGGTTCTAATCCGAATTACATGGCTGAAAACCATATCAGAAATCAACTTCTGATATCAGATGGTGGGCATGTACTTCCTGAAAATAATTTGAACGAGGCTTCTTGCAGTAATACTGGATGGAGGAATCAGGCAAGTCCAGTACGACAATGGATGGCAAAACTAACCTCACCAGCTCTCGACATATCTGATTCTTCTTCCAAGTTGCCTCTGCGGAAAAGGGAAAATACCTTGAAGGCAAAGCTCCTTGAAGCAAGGTCTAAAGGACAACGTTCAACACGAACAAAAGCTTTCAAAAGTACCTCTTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

693

Amino Acids

78.38

Weight (kDa)

8.76

Isoelectric Point (pI)

57.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 561, 624
AarI CACCTGC 1 cut(s) 1379
Acc36I ACCTGC 2 cut(s) 1379, 1543
AccB1I GGYRCC 1 cut(s) 553
AccII CGCG 1 cut(s) 949
AciI CCGC 4 cut(s) 320, 337, 1561, 1984
AclI AACGTT 1 cut(s) 2041
AclWI GGATC 4 cut(s) 741, 861, 1119, 1332
AcoI YGGCCR 1 cut(s) 160
AcsI RAATTY 4 cut(s) 49, 1225, 1336, 1648
AcuI CTGAAG 1 cut(s) 1689
AfaI GTAC 4 cut(s) 771, 1845, 1914, 2071
AfiI CCNNNNNNNGG 2 cut(s) 355, 961
AflII CTTAAG 1 cut(s) 1295
AhlI ACTAGT 1 cut(s) 829
AjnI CCWGG 1 cut(s) 162
AjuI GAANNNNNNNTTGG 2 cut(s) 713, 745
AleI CACNNNNGTG 2 cut(s) 128, 225
Alw21I GWGCWC 1 cut(s) 1437
Alw26I GTCTC 5 cut(s) 152, 235, 945, 1253, 1704
AlwI GGATC 4 cut(s) 741, 861, 1119, 1332
AoxI GGCC 3 cut(s) 115, 160, 1608
ApeKI GCWGC 8 cut(s) 105, 209, 251, 328, 331, 455, 866, 1189
ApoI RAATTY 4 cut(s) 49, 1225, 1336, 1648
AseI ATTAAT 1 cut(s) 1359
Asp700I GAANNNNTTC 3 cut(s) 275, 1336, 1350
AspA2I CCTAGG 1 cut(s) 323
AspLEI GCGC 2 cut(s) 336, 949
AspS9I GGNCC 2 cut(s) 116, 1608
AsuHPI GGTGA 8 cut(s) 38, 467, 494, 623, 976, 1403, 1519, 1932
AvrII CCTAGG 1 cut(s) 323
BaeGI GKGCMC 2 cut(s) 368, 1378
BalI TGGCCA 1 cut(s) 162
BanI GGYRCC 1 cut(s) 553
BanII GRGCYC 1 cut(s) 1437
BbsI GAAGAC 3 cut(s) 198, 1038, 1205
Bbv12I GWGCWC 1 cut(s) 1437
BbvI GCAGC 8 cut(s) 117, 196, 238, 340, 343, 442, 853, 1201
BccI CCATC 7 cut(s) 127, 191, 1576, 1594, 1826, 1884, 1918
BciT130I CCWGG 1 cut(s) 164
BclI TGATCA 1 cut(s) 217
BcoDI GTCTC 5 cut(s) 152, 235, 945, 1253, 1704
BcuI ACTAGT 1 cut(s) 829
BfaI CTAG 8 cut(s) 237, 324, 794, 830, 893, 1193, 1572, 1620
BfmI CTRYAG 3 cut(s) 567, 867, 1482
BfoI RGCGCY 1 cut(s) 337
BfrI CTTAAG 1 cut(s) 1295
BfuAI ACCTGC 2 cut(s) 1379, 1543
BlnI CCTAGG 1 cut(s) 323
Bme1390I CCNGG 1 cut(s) 164
BmgT120I GGNCC 2 cut(s) 116, 1608
BmiI GGNNCC 1 cut(s) 555
BmrFI CCNGG 1 cut(s) 164
BmrI ACTGGG 1 cut(s) 399
BmsI GCATC 5 cut(s) 282, 456, 1170, 1176, 1375
BmuI ACTGGG 1 cut(s) 399
BpiI GAAGAC 3 cut(s) 198, 1038, 1205
BplI GAGNNNNNCTC 2 cut(s) 1363, 1395
BpmI CTGGAG 1 cut(s) 111
BpuEI CTTGAG 1 cut(s) 1365
BsaI GGTCTC 1 cut(s) 945
BsaJI CCNNGG 3 cut(s) 323, 349, 1319
BsaWI WCCGGW 1 cut(s) 663
Bsc4I CCNNNNNNNGG 2 cut(s) 355, 961
Bse1I ACTGG 6 cut(s) 128, 405, 582, 1123, 1891, 1910
Bse3DI GCAATG 1 cut(s) 310
BseBI CCWGG 1 cut(s) 164
BseDI CCNNGG 3 cut(s) 323, 349, 1319
BseGI GGATG 7 cut(s) 119, 692, 892, 1177, 1185, 1895, 1929
BseLI CCNNNNNNNGG 2 cut(s) 355, 961
BseMI GCAATG 1 cut(s) 310
BseMII CTCAG 3 cut(s) 951, 980, 1194
BseNI ACTGG 6 cut(s) 128, 405, 582, 1123, 1891, 1910
BseRI GAGGAG 2 cut(s) 24, 27
BseSI GKGCMC 2 cut(s) 368, 1378
BseXI GCAGC 8 cut(s) 117, 196, 238, 340, 343, 442, 853, 1201
BseYI CCCAGC 1 cut(s) 244
Bsh1236I CGCG 1 cut(s) 949
BshFI GGCC 3 cut(s) 117, 162, 1610
BshNI GGYRCC 1 cut(s) 553
BsiHKAI GWGCWC 1 cut(s) 1437
BsiSI CCGG 1 cut(s) 664
BslFI GGGAC 2 cut(s) 387, 601
BslI CCNNNNNNNGG 2 cut(s) 355, 961
BsmAI GTCTC 5 cut(s) 152, 235, 945, 1253, 1704
BsmFI GGGAC 2 cut(s) 387, 601
BsnI GGCC 3 cut(s) 117, 162, 1610
Bso31I GGTCTC 1 cut(s) 945
Bsp1286I GDGCHC 3 cut(s) 368, 1378, 1437
BspACI CCGC 4 cut(s) 320, 337, 1561, 1984
BspANI GGCC 3 cut(s) 117, 162, 1610
BspCNI CTCAG 3 cut(s) 952, 981, 1195
BspFNI CGCG 1 cut(s) 949
BspLI GGNNCC 1 cut(s) 555
BspMAI CTGCAG 2 cut(s) 571, 871
BspMI ACCTGC 2 cut(s) 1379, 1543
BspPI GGATC 4 cut(s) 741, 861, 1119, 1332
BspQI GCTCTTC 1 cut(s) 833
BspT107I GGYRCC 1 cut(s) 553
BspTI CTTAAG 1 cut(s) 1295
BspTNI GGTCTC 1 cut(s) 945
BsrDI GCAATG 1 cut(s) 310
BsrI ACTGG 6 cut(s) 128, 405, 582, 1123, 1891, 1910
BssECI CCNNGG 3 cut(s) 323, 349, 1319
BssT1I CCWWGG 2 cut(s) 323, 1319
Bst2UI CCWGG 1 cut(s) 164
Bst4CI ACNGT 2 cut(s) 1133, 1454
Bst6I CTCTTC 2 cut(s) 833, 1546
BstAFI CTTAAG 1 cut(s) 1295
BstC8I GCNNGC 4 cut(s) 423, 433, 529, 1577
BstDEI CTNAG 4 cut(s) 960, 989, 1203, 1244
BstENI CCTNNNNNAGG 2 cut(s) 353, 959
BstF5I GGATG 7 cut(s) 119, 692, 892, 1177, 1185, 1895, 1929
BstFNI CGCG 1 cut(s) 949
BstH2I RGCGCY 1 cut(s) 337
BstHHI GCGC 2 cut(s) 336, 949
BstMAI GTCTC 5 cut(s) 152, 235, 945, 1253, 1704
BstMWI GCNNNNNNNGC 4 cut(s) 114, 328, 722, 1189
BstNI CCWGG 1 cut(s) 164
BstNSI RCATGY 3 cut(s) 1154, 1699, 1844
BstSCI CCNGG 1 cut(s) 162
BstSFI CTRYAG 3 cut(s) 567, 867, 1482
BstSLI GKGCMC 2 cut(s) 368, 1378
BstUI CGCG 1 cut(s) 949
BstV1I GCAGC 8 cut(s) 117, 196, 238, 340, 343, 442, 853, 1201
BstV2I GAAGAC 3 cut(s) 198, 1038, 1205
BstXI CCANNNNNNTGG 1 cut(s) 388
BsuRI GGCC 3 cut(s) 117, 162, 1610
BtsCI GGATG 7 cut(s) 119, 692, 892, 1177, 1185, 1895, 1929
BtsI GCAGTG 1 cut(s) 1420
BtsIMutI CAGTG 6 cut(s) 135, 461, 704, 716, 1420, 1459
BveI ACCTGC 2 cut(s) 1379, 1543
Cac8I GCNNGC 4 cut(s) 423, 433, 529, 1577
CfoI GCGC 2 cut(s) 336, 949
Cfr13I GGNCC 2 cut(s) 116, 1608
CseI GACGC 2 cut(s) 203, 447
Csp6I GTAC 4 cut(s) 770, 1844, 1913, 2070
CspCI CAANNNNNGTGG 2 cut(s) 531, 566
CviQI GTAC 4 cut(s) 770, 1844, 1913, 2070
DdeI CTNAG 4 cut(s) 960, 989, 1203, 1244
EaeI YGGCCR 1 cut(s) 160
Eam1104I CTCTTC 2 cut(s) 833, 1546
EarI CTCTTC 2 cut(s) 833, 1546
Ecl136II GAGCTC 1 cut(s) 1435
Eco130I CCWWGG 2 cut(s) 323, 1319
Eco24I GRGCYC 1 cut(s) 1437
Eco31I GGTCTC 1 cut(s) 945
Eco32I GATATC 1 cut(s) 1827
Eco53kI GAGCTC 1 cut(s) 1435
Eco57I CTGAAG 1 cut(s) 1689
EcoICRI GAGCTC 1 cut(s) 1435
EcoNI CCTNNNNNAGG 2 cut(s) 353, 959
EcoRI GAATTC 2 cut(s) 1225, 1336
EcoRII CCWGG 1 cut(s) 162
EcoRV GATATC 1 cut(s) 1827
EcoT14I CCWWGG 2 cut(s) 323, 1319
EcoT38I GRGCYC 1 cut(s) 1437
ErhI CCWWGG 2 cut(s) 323, 1319
FalI AAGNNNNNCTT 1 cut(s) 2059
FaqI GGGAC 2 cut(s) 387, 601
FauNDI CATATG 1 cut(s) 1281
FbaI TGATCA 1 cut(s) 217
FokI GGATG 7 cut(s) 106, 679, 899, 1184, 1192, 1902, 1936
FriOI GRGCYC 1 cut(s) 1437
FspBI CTAG 8 cut(s) 237, 324, 794, 830, 893, 1193, 1572, 1620
GlaI GCGC 2 cut(s) 335, 948
GsaI CCCAGC 1 cut(s) 248
GsuI CTGGAG 1 cut(s) 111
HaeII RGCGCY 1 cut(s) 337
HaeIII GGCC 3 cut(s) 117, 162, 1610
HapII CCGG 1 cut(s) 664
HgaI GACGC 2 cut(s) 203, 447
HhaI GCGC 2 cut(s) 336, 949
Hin6I GCGC 2 cut(s) 334, 947
HinP1I GCGC 2 cut(s) 334, 947
HindIII AAGCTT 1 cut(s) 2058
HpaII CCGG 1 cut(s) 664
HphI GGTGA 8 cut(s) 38, 467, 494, 623, 976, 1403, 1519, 1932
Hpy166II GTNNAC 1 cut(s) 1237
Hpy188III TCNNGA 8 cut(s) 371, 413, 658, 748, 1217, 1382, 1850, 1949
Hpy8I GTNNAC 1 cut(s) 1237
Hpy99I CGWCG 1 cut(s) 1332
HpyAV CCTTC 6 cut(s) 72, 78, 483, 900, 1277, 1999
HpyCH4III ACNGT 2 cut(s) 1133, 1454
HpyCH4IV ACGT 1 cut(s) 2041
HpyF10VI GCNNNNNNNGC 4 cut(s) 114, 328, 722, 1189
HpyF3I CTNAG 4 cut(s) 960, 989, 1203, 1244
HpySE526I ACGT 1 cut(s) 2041
HspAI GCGC 2 cut(s) 334, 947
Ksp22I TGATCA 1 cut(s) 217
LguI GCTCTTC 1 cut(s) 833
LmnI GCTCC 2 cut(s) 248, 2019
Lsp1109I GCAGC 8 cut(s) 117, 196, 238, 340, 343, 442, 853, 1201
LweI GCATC 5 cut(s) 282, 456, 1170, 1176, 1375
MaeI CTAG 8 cut(s) 237, 324, 794, 830, 893, 1193, 1572, 1620
MaeII ACGT 1 cut(s) 2041
MaeIII GTNAC 4 cut(s) 459, 571, 1415, 1454
MfeI CAATTG 1 cut(s) 483
MhlI GDGCHC 3 cut(s) 368, 1378, 1437
MlsI TGGCCA 1 cut(s) 162
MluNI TGGCCA 1 cut(s) 162
MlyI GAGTC 3 cut(s) 154, 623, 1412
MmeI TCCRAC 3 cut(s) 405, 711, 1008
Mox20I TGGCCA 1 cut(s) 162
MroXI GAANNNNTTC 3 cut(s) 275, 1336, 1350
MscI TGGCCA 1 cut(s) 162
MseI TTAA 8 cut(s) 203, 440, 597, 911, 1296, 1359, 1584, 2077
MslI CAYNNNNRTG 3 cut(s) 128, 225, 741
Msp20I TGGCCA 1 cut(s) 162
MspCI CTTAAG 1 cut(s) 1295
MspI CCGG 1 cut(s) 664
MspR9I CCNGG 1 cut(s) 164
MunI CAATTG 1 cut(s) 483
MvaI CCWGG 1 cut(s) 164
MvnI CGCG 1 cut(s) 949
MwoI GCNNNNNNNGC 4 cut(s) 114, 328, 722, 1189
NdeI CATATG 1 cut(s) 1281
NlaIV GGNNCC 1 cut(s) 555
NmeAIII GCCGAG 1 cut(s) 330
NmuCI GTSAC 3 cut(s) 459, 1415, 1454
NspI RCATGY 3 cut(s) 1154, 1699, 1844
OliI CACNNNNGTG 2 cut(s) 128, 225
PaqCI CACCTGC 1 cut(s) 1379
PciSI GCTCTTC 1 cut(s) 833
PcsI WCGNNNNNNNCGW 1 cut(s) 2047
PdmI GAANNNNTTC 3 cut(s) 275, 1336, 1350
PfeI GAWTC 7 cut(s) 859, 1144, 1160, 1346, 1403, 1897, 1961
PleI GAGTC 3 cut(s) 153, 622, 1412
PpsI GAGTC 3 cut(s) 153, 622, 1412
PshBI ATTAAT 1 cut(s) 1359
PsiI TTATAA 2 cut(s) 561, 624
Psp124BI GAGCTC 1 cut(s) 1437
Psp1406I AACGTT 1 cut(s) 2041
Psp6I CCWGG 1 cut(s) 162
PspFI CCCAGC 1 cut(s) 244
PspGI CCWGG 1 cut(s) 162
PspN4I GGNNCC 1 cut(s) 555
PspPI GGNCC 2 cut(s) 116, 1608
PstI CTGCAG 2 cut(s) 571, 871
RsaI GTAC 4 cut(s) 771, 1845, 1914, 2071
RsaNI GTAC 4 cut(s) 770, 1844, 1913, 2070
RseI CAYNNNNRTG 3 cut(s) 128, 225, 741
SacI GAGCTC 1 cut(s) 1437
SapI GCTCTTC 1 cut(s) 833
SaqAI TTAA 8 cut(s) 203, 440, 597, 911, 1296, 1359, 1584, 2077
Sau96I GGNCC 2 cut(s) 116, 1608
SchI GAGTC 3 cut(s) 154, 623, 1412
ScrFI CCNGG 1 cut(s) 164
SduI GDGCHC 3 cut(s) 368, 1378, 1437
SfaNI GCATC 5 cut(s) 282, 456, 1170, 1176, 1375
SfcI CTRYAG 3 cut(s) 567, 867, 1482
SmiMI CAYNNNNRTG 3 cut(s) 128, 225, 741
SmlI CTYRAG 2 cut(s) 1295, 1380
SmoI CTYRAG 2 cut(s) 1295, 1380
SpeI ACTAGT 1 cut(s) 829
SsiI CCGC 4 cut(s) 320, 337, 1561, 1984
SspMI CTAG 8 cut(s) 237, 324, 794, 830, 893, 1193, 1572, 1620
SstI GAGCTC 1 cut(s) 1437
StyD4I CCNGG 1 cut(s) 162
StyI CCWWGG 2 cut(s) 323, 1319
TaaI ACNGT 2 cut(s) 1133, 1454
TaiI ACGT 1 cut(s) 2044
TaqI TCGA 6 cut(s) 1016, 1270, 1330, 1431, 1523, 1950
TaqII GACCGA 1 cut(s) 864
TatI WGTACW 1 cut(s) 1843
TauI GCSGC 2 cut(s) 339, 1563
TfiI GAWTC 7 cut(s) 859, 1144, 1160, 1346, 1403, 1897, 1961
Tru1I TTAA 8 cut(s) 203, 440, 597, 911, 1296, 1359, 1584, 2077
Tru9I TTAA 8 cut(s) 203, 440, 597, 911, 1296, 1359, 1584, 2077
TscAI CASTG 6 cut(s) 135, 468, 711, 723, 1420, 1459
TseFI GTSAC 3 cut(s) 459, 1415, 1454
TseI GCWGC 8 cut(s) 105, 209, 251, 328, 331, 455, 866, 1189
Tsp45I GTSAC 3 cut(s) 459, 1415, 1454
TspGWI ACGGA 1 cut(s) 1192
TspRI CASTG 6 cut(s) 135, 468, 711, 723, 1420, 1459
Vha464I CTTAAG 1 cut(s) 1295
VspI ATTAAT 1 cut(s) 1359
XagI CCTNNNNNAGG 2 cut(s) 353, 959
XapI RAATTY 4 cut(s) 49, 1225, 1336, 1648
XceI RCATGY 3 cut(s) 1154, 1699, 1844
XcmI CCANNNNNNNNNTGG 1 cut(s) 1917
XmaJI CCTAGG 1 cut(s) 323
XmnI GAANNNNTTC 3 cut(s) 275, 1336, 1350
XspI CTAG 8 cut(s) 237, 324, 794, 830, 893, 1193, 1572, 1620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.