Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0008611

Physical Location & Seq

Genomic Coordinates Forward (+)

19750817 .. 19753087

Gene Structure 2271 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1094600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGAAAAGGGAAGGAGAAAGTAGGGAAGGGGGAGCAGAAAAGGAGGAAAATTTGGCAGAAAAGTTGACAGTAAGGAGGGGAGGAGTATTGATTAGAAAAAGCACAGGTGGTGGCCCAACCACTCCAGTAGTGTCCTCATGGAATTGGAGACCTTGTTGCCCTTTTGACCTTGATCCCATCATTAAAGACTCCCCCTTTACCATTGATACCAGCTCCTCCTCCTCCTCTGTCTCTGCTAGAAAGCTAGCTGCTGCTCTTTGGGAGTTTCAACACTTCCAATTCCTTCCAAAGATGCACAGGGCTTCTCACACTAATGGTGGTGGCGGCGATGGCAGTGGTGGTGGTGGTGCTCCACCTCCTAGGCTGAGACACCTTCAGCTCCATCACCACCACCCCAGCAGAGACAAGAAGGCTCTTGATCTTTCTCACTTTTTGGCTGATAATTGTCCTAGTTCTCCTGACCAGCCGGAAAGTGCAAGCAGTTTAAGGAGGCATATTGCAGCATCGTTGATGCAACATCACCGAACGATTGAAAGGAACAGATTGAACAATCACATTTTGCAGCCTGCATCGCCTGCAAGCTACGGTAGTTCCCTGGAGGTGGCTCCGTATAACCTTGCAGTCACCCCTAGCGGTTCTTTGGACTTTAAGGGAAGGATTGGCGAATCACACTATAATCTTAAAACATCTACAGAACTGCTAAAAGTTTTGAACCGGATTTGGAGCTTGGAGGAACAGCATACATCTAATATAGCATTGATAAAAGCGTTGAAAACAGAGTTGGATCATGCTCGTGTTAAGATCAAAGAGTTGCTTCGGGTTCGGCAAGCTGATCGACATGAGCTAGATGATTTGGTGAAACAAATTTCAGAAGATAAACTAGTTAGGAAGAACAAAGAACAGGATCGAATCCATGCTGCAGTTCAGTCGGTCAGGGATGAGCTAGAAGATGAGAAGAAGTTAAGAAAACGATCAGAAAGCCTACACAGGAACTTGAAAGAGAGCGGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0009507 GO:0009536 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

338

Amino Acids

37.68

Weight (kDa)

9.43

Isoelectric Point (pI)

61.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64180 AT5G41620 AT5G41620 AT5G41620 AT5G41620
fragaria_vesca	FvH4_5g03740 FvH4_5g03740 FvH4_5g03740 FvH4_5g03740
malus_domestica	MD00G1094600.v1.1 MD06G1098100.v1.1
prunus_persica	Prupe.5G111800_v2.0.a1
pyrus_communis	pycom06g09350
rosa_chinensis	RchiOBHm_Chr7g0195911
rosa_laevigata	RLG00000004080
rosa_multiflora	Rmu_sc0004016.1_g000007
rosa_roxburghii	Rroxscaffold_3G00260000
rosa_rugosa	Rorug07G0027400
rosa_samantha	Rh7AG155000 Rh7BG156800 Rh7CG160500 Rh7DG156000
rosa_wichuraiana	Rw7G013250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1005
AciI	CCGC	3 cut(s)	324, 633, 1005
AclWI	GGATC	3 cut(s)	167, 792, 912
AcsI	RAATTY	2 cut(s)	49, 864
AcuI	CTGAAG	1 cut(s)	359
AfiI	CCNNNNNNNGG	1 cut(s)	601
AgsI	TTSAA	6 cut(s)	269, 533, 547, 712, 772, 997
AhlI	ACTAGT	1 cut(s)	880
AjnI	CCWGG	1 cut(s)	594
AjuI	GAANNNNNNNTTGG	2 cut(s)	764, 796
AluBI	AGCT	9 cut(s)	213, 244, 248, 379, 582, 726, 830, 844, 943
AluI	AGCT	9 cut(s)	213, 244, 248, 379, 582, 726, 830, 844, 943
Alw21I	GWGCWC	1 cut(s)	352
Alw26I	GTCTC	4 cut(s)	142, 235, 361, 396
AlwI	GGATC	3 cut(s)	167, 792, 912
AoxI	GGCC	1 cut(s)	112
ApeKI	GCWGC	5 cut(s)	248, 251, 500, 562, 917
ApoI	RAATTY	2 cut(s)	49, 864
AspA2I	CCTAGG	1 cut(s)	359
AspS9I	GGNCC	1 cut(s)	113
AsuHPI	GGTGA	4 cut(s)	377, 512, 616, 868
AsuNHI	GCTAGC	1 cut(s)	244
AvrII	CCTAGG	1 cut(s)	359
BauI	CACGAG	1 cut(s)	792
Bbv12I	GWGCWC	1 cut(s)	352
BbvI	GCAGC	5 cut(s)	235, 238, 512, 574, 904
BccI	CCATC	3 cut(s)	185, 323, 390
BcgI	CGANNNNNNTGC	4 cut(s)	815, 849, 909, 943
BciT130I	CCWGG	1 cut(s)	596
BcoDI	GTCTC	4 cut(s)	142, 235, 361, 396
BcuI	ACTAGT	1 cut(s)	880
BfaI	CTAG	8 cut(s)	237, 245, 360, 450, 630, 845, 881, 944
BfmI	CTRYAG	2 cut(s)	690, 918
BisI	GCNGC	6 cut(s)	249, 252, 325, 501, 563, 918
BlnI	CCTAGG	1 cut(s)	359
BlsI	GCNGC	6 cut(s)	250, 253, 326, 502, 564, 919
Bme1390I	CCNGG	1 cut(s)	596
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	1 cut(s)	606
BmrFI	CCNGG	1 cut(s)	596
BmsI	GCATC	4 cut(s)	282, 501, 512, 578
BmtI	GCTAGC	1 cut(s)	248
BpmI	CTGGAG	2 cut(s)	108, 617
BsaI	GGTCTC	1 cut(s)	142
BsaJI	CCNNGG	2 cut(s)	359, 594
BsaWI	WCCGGW	1 cut(s)	714
BsaXI	ACNNNNNCTCC	2 cut(s)	139, 169
Bsc4I	CCNNNNNNNGG	1 cut(s)	601
Bse1I	ACTGG	1 cut(s)	125
BseBI	CCWGG	1 cut(s)	596
BseDI	CCNNGG	2 cut(s)	359, 594
BseGI	GGATG	1 cut(s)	943
BseLI	CCNNNNNNNGG	1 cut(s)	601
BseMII	CTCAG	1 cut(s)	356
BseNI	ACTGG	1 cut(s)	125
BseRI	GAGGAG	5 cut(s)	96, 205, 208, 211, 214
BseXI	GCAGC	5 cut(s)	235, 238, 512, 574, 904
BseYI	CCCAGC	1 cut(s)	395
BshFI	GGCC	1 cut(s)	114
BsiHKAI	GWGCWC	1 cut(s)	352
BsiSI	CCGG	2 cut(s)	467, 715
BslI	CCNNNNNNNGG	1 cut(s)	601
BsmAI	GTCTC	4 cut(s)	142, 235, 361, 396
BsnI	GGCC	1 cut(s)	114
Bso31I	GGTCTC	1 cut(s)	142
Bsp1286I	GDGCHC	1 cut(s)	352
Bsp143I	GATC	7 cut(s)	172, 418, 784, 801, 832, 904, 971
BspACI	CCGC	3 cut(s)	324, 633, 1005
BspANI	GGCC	1 cut(s)	114
BspCNI	CTCAG	1 cut(s)	357
BspLI	GGNNCC	1 cut(s)	606
BspMAI	CTGCAG	1 cut(s)	922
BspOI	GCTAGC	1 cut(s)	248
BspPI	GGATC	3 cut(s)	167, 792, 912
BspTNI	GGTCTC	1 cut(s)	142
BsrBI	CCGCTC	1 cut(s)	1005
BsrI	ACTGG	1 cut(s)	125
BssECI	CCNNGG	2 cut(s)	359, 594
BssMI	GATC	7 cut(s)	172, 418, 784, 801, 832, 904, 971
BssSI	CACGAG	1 cut(s)	792
BssT1I	CCWWGG	1 cut(s)	359
Bst2BI	CACGAG	1 cut(s)	792
Bst2UI	CCWGG	1 cut(s)	596
Bst4CI	ACNGT	2 cut(s)	70, 587
BstAPI	GCANNNNNTGC	1 cut(s)	575
BstC8I	GCNNGC	6 cut(s)	246, 478, 567, 576, 580, 828
BstDEI	CTNAG	1 cut(s)	365
BstF5I	GGATG	1 cut(s)	943
BstKTI	GATC	7 cut(s)	175, 421, 787, 804, 835, 907, 974
BstMAI	GTCTC	4 cut(s)	142, 235, 361, 396
BstMBI	GATC	7 cut(s)	172, 418, 784, 801, 832, 904, 971
BstMWI	GCNNNNNNNGC	3 cut(s)	330, 571, 575
BstNI	CCWGG	1 cut(s)	596
BstSCI	CCNGG	1 cut(s)	594
BstSFI	CTRYAG	2 cut(s)	690, 918
BstV1I	GCAGC	5 cut(s)	235, 238, 512, 574, 904
BsuRI	GGCC	1 cut(s)	114
BtgZI	GCGATG	2 cut(s)	342, 555
BtsCI	GGATG	1 cut(s)	943
BtsI	GCAGTG	1 cut(s)	340
BtsIMutI	CAGTG	1 cut(s)	340
Cac8I	GCNNGC	6 cut(s)	246, 478, 567, 576, 580, 828
Cfr13I	GGNCC	1 cut(s)	113
CviAII	CATG	4 cut(s)	138, 788, 839, 914
DdeI	CTNAG	1 cut(s)	365
DpnI	GATC	7 cut(s)	174, 420, 786, 803, 834, 906, 973
DpnII	GATC	7 cut(s)	172, 418, 784, 801, 832, 904, 971
Eco130I	CCWWGG	1 cut(s)	359
Eco31I	GGTCTC	1 cut(s)	142
Eco57I	CTGAAG	1 cut(s)	359
EcoRII	CCWGG	1 cut(s)	594
EcoT14I	CCWWGG	1 cut(s)	359
ErhI	CCWWGG	1 cut(s)	359
FaeI	CATG	4 cut(s)	141, 791, 842, 917
FaiI	YATR	9 cut(s)	139, 495, 612, 675, 741, 752, 789, 840, 915
FalI	AAGNNNNNCTT	2 cut(s)	798, 830
FatI	CATG	4 cut(s)	137, 787, 838, 913
Fnu4HI	GCNGC	6 cut(s)	249, 252, 325, 501, 563, 918
FokI	GGATG	1 cut(s)	950
Fsp4HI	GCNGC	6 cut(s)	249, 252, 325, 501, 563, 918
FspBI	CTAG	8 cut(s)	237, 245, 360, 450, 630, 845, 881, 944
GluI	GCNGC	6 cut(s)	249, 252, 325, 501, 563, 918
GsaI	CCCAGC	1 cut(s)	399
GsuI	CTGGAG	2 cut(s)	108, 617
HaeIII	GGCC	1 cut(s)	114
HapII	CCGG	2 cut(s)	467, 715
Hin1II	CATG	4 cut(s)	141, 791, 842, 917
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HinfI	GANTC	3 cut(s)	188, 665, 909
HpaII	CCGG	2 cut(s)	467, 715
HphI	GGTGA	4 cut(s)	377, 512, 616, 868
Hpy166II	GTNNAC	1 cut(s)	66
Hpy188I	TCNGA	2 cut(s)	871, 976
Hpy188III	TCNNGA	2 cut(s)	416, 458
Hpy8I	GTNNAC	1 cut(s)	66
HpyAV	CCTTC	6 cut(s)	5, 20, 293, 383, 403, 648
HpyCH4III	ACNGT	2 cut(s)	70, 587
HpyCH4V	TGCA	9 cut(s)	295, 476, 500, 514, 562, 569, 578, 620, 920
HpyF10VI	GCNNNNNNNGC	3 cut(s)	330, 571, 575
HpyF3I	CTNAG	1 cut(s)	365
Hsp92II	CATG	4 cut(s)	141, 791, 842, 917
Kzo9I	GATC	7 cut(s)	172, 418, 784, 801, 832, 904, 971
LmnI	GCTCC	6 cut(s)	32, 218, 355, 384, 610, 723
Lsp1109I	GCAGC	5 cut(s)	235, 238, 512, 574, 904
LweI	GCATC	4 cut(s)	282, 501, 512, 578
MaeI	CTAG	8 cut(s)	237, 245, 360, 450, 630, 845, 881, 944
MaeIII	GTNAC	1 cut(s)	622
MalI	GATC	7 cut(s)	174, 420, 786, 803, 834, 906, 973
MbiI	CCGCTC	1 cut(s)	1005
MboI	GATC	7 cut(s)	172, 418, 784, 801, 832, 904, 971
MboII	GAAGA	4 cut(s)	884, 901, 959, 967
MhlI	GDGCHC	1 cut(s)	352
MluCI	AATT	6 cut(s)	49, 142, 278, 442, 864, 1009
MlyI	GAGTC	1 cut(s)	182
MmeI	TCCRAC	1 cut(s)	762
MseI	TTAA	7 cut(s)	183, 485, 648, 681, 798, 962, 1012
MslI	CAYNNNNRTG	2 cut(s)	312, 792
MspI	CCGG	2 cut(s)	467, 715
MspR9I	CCNGG	1 cut(s)	596
MvaI	CCWGG	1 cut(s)	596
MwoI	GCNNNNNNNGC	3 cut(s)	330, 571, 575
NdeII	GATC	7 cut(s)	172, 418, 784, 801, 832, 904, 971
NheI	GCTAGC	1 cut(s)	244
NlaIII	CATG	4 cut(s)	141, 791, 842, 917
NlaIV	GGNNCC	1 cut(s)	606
NmuCI	GTSAC	1 cut(s)	622
PfeI	GAWTC	2 cut(s)	665, 909
PkrI	GCNGC	6 cut(s)	250, 253, 326, 502, 564, 919
PleI	GAGTC	1 cut(s)	182
PpsI	GAGTC	1 cut(s)	182
Psp6I	CCWGG	1 cut(s)	594
PspFI	CCCAGC	1 cut(s)	395
PspGI	CCWGG	1 cut(s)	594
PspN4I	GGNNCC	1 cut(s)	606
PspPI	GGNCC	1 cut(s)	113
PstI	CTGCAG	1 cut(s)	922
RseI	CAYNNNNRTG	2 cut(s)	312, 792
SaqAI	TTAA	7 cut(s)	183, 485, 648, 681, 798, 962, 1012
SatI	GCNGC	6 cut(s)	249, 252, 325, 501, 563, 918
Sau3AI	GATC	7 cut(s)	172, 418, 784, 801, 832, 904, 971
Sau96I	GGNCC	1 cut(s)	113
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	1 cut(s)	596
SduI	GDGCHC	1 cut(s)	352
SfaNI	GCATC	4 cut(s)	282, 501, 512, 578
SfcI	CTRYAG	2 cut(s)	690, 918
SmiMI	CAYNNNNRTG	2 cut(s)	312, 792
SpeI	ACTAGT	1 cut(s)	880
Sse9I	AATT	6 cut(s)	49, 142, 278, 442, 864, 1009
SsiI	CCGC	3 cut(s)	324, 633, 1005
SspMI	CTAG	8 cut(s)	237, 245, 360, 450, 630, 845, 881, 944
StyD4I	CCNGG	1 cut(s)	594
StyI	CCWWGG	1 cut(s)	359
TaaI	ACNGT	2 cut(s)	70, 587
TaqI	TCGA	2 cut(s)	835, 907
TaqII	GACCGA	1 cut(s)	919
TasI	AATT	6 cut(s)	49, 142, 278, 442, 864, 1009
TauI	GCSGC	1 cut(s)	327
TfiI	GAWTC	2 cut(s)	665, 909
Tru1I	TTAA	7 cut(s)	183, 485, 648, 681, 798, 962, 1012
Tru9I	TTAA	7 cut(s)	183, 485, 648, 681, 798, 962, 1012
TscAI	CASTG	1 cut(s)	340
TseFI	GTSAC	1 cut(s)	622
TseI	GCWGC	5 cut(s)	248, 251, 500, 562, 917
Tsp45I	GTSAC	1 cut(s)	622
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	597
TspRI	CASTG	1 cut(s)	340
XapI	RAATTY	2 cut(s)	49, 864
XmaJI	CCTAGG	1 cut(s)	359
XspI	CTAG	8 cut(s)	237, 245, 360, 450, 630, 845, 881, 944

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.