Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0008611

Physical Location & Seq

Genomic Coordinates Reverse (-)

11710446 .. 11714758

Gene Structure 4313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG156800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1557 bp

ATGGTTCATTGCCTCTCGTTTCAGGTGGCGCCTTATAACCCTGCAGTTACTCCCACCAGTTCTTTAGACTTTAATGGAAGGATTGGCGAGTCACATTATAATCTTAAAACATCTACAGAACTGCTAAAGGTCTTGAACCGGATTTGGAGTTTGGAGGAGCAGCATACGTCTAATATAGCACTGATAAAAGCACTGAAGGCTGAGTTGGATCATGCCCGTGTCAAGATCAAAGATTTGGTTAGGGTACGGCAAGCTGATAGACATGAGCTAGACAATTTGATGAAGCAAATTGGAGAAGATAAACTAGTTAGGAAGAGCAAAGAACAGGATCGGATACATGCTGCAGTTCAGTCTGTGAGGGATGAACTAGAAGATGAGAGAAGGTTAAGAAAACGATCAGAAAGCCTACACAGGAAGTTAGCACGAGACCTCTCTGAGGTGAAATCTTCTCTTTCCAATTCCCTGAGAGAGCTTGAAAGTGAGAGGAAATCGAGGAAGTTGTTGGAAGACCTATGCGATGAATTTGCTAAAGGCATTAAAGACTATGAACAAGAGGTGCACTTTTTGAAACAGAAATCTGACAAGGATTGGACTGGAAGCTCCGACCGTGATCGATTGATTCTCCATGTATCTGAATCATGGCTGGATGAACGGATGCAGATGCAGCTAGAACAAACCGAGTGTGGTCTTCCCGAAAAGAACTCAATAGTGGACAAACTAAGCCTTGAAATAGAGACCTTCCTTCGAGCTAAACACATGAACAACACTCTTAAGAATGCCGAAAGTATGTTGCCAAGGGATCGTCGAAAGAATTCACTGGAATCTGTTCCGCTTAATGAGGCTGTGAGTGCACCTCAAGATGCAGGTGATGAAGAAGATTCTTTAGGCAGTGACTCACATTGTTTCGAGCTCAATAAACCGAGCAACAGTGACTTCAAATTGCAAGTGGAGGAGGAAGCTGTAGAGAATGGTATTGATGAAAAGGTAAAATCAGAGCACTCAAAGAAAAAACCTGCCTCTTCTGAAAGAGTAAGAAGCCGTACTCCGTCCAGCTTGCAAGTTAAGTTTGAAGAACAGATGGCTTGGGCCTTGTCATGTAGTGAAAATAAGAAATCCCAAGTGGTAAATGCAGAGCAGGGGAAAACTGAAGAAGTGAAGCAAACTGAAACAAGCATGTCTCAAAAATCTGAACATTGTGAAGCCACAGAAGATGAAACTTACAGAAAGGGAAATAAACAAGATGAAAGACATGGTTCTAATCCGAATTACATGGCTGAAAACCATTTAAGAAATCAACTTTTGATATCAGATGGTGGGCTTGTACATCCTGAAAATAATTTGAATGAGGCTTCTTGCAGTAATACTGGATGGAGGAATCAGGCAAGTCCAGTTCGACAGTGGATGGCAAGACTAACCTCTCCAACTCTTGACATATCAGAGTCTTCTTCCAAGTTGCCTCTGCGGAAAAAGGAAAATACCTTGAAGGCAAAGCTTCTTGAAGCAAGGTCTAAAGGACAACGGTCAACACGAACAAAAGCTTTCAAAAGTACCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0009507 GO:0009536 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

518

Amino Acids

59.27

Weight (kDa)

6.79

Isoelectric Point (pI)

51.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64180 AT5G41620 AT5G41620 AT5G41620 AT5G41620
fragaria_vesca	FvH4_5g03740 FvH4_5g03740 FvH4_5g03740 FvH4_5g03740
malus_domestica	MD00G1094600.v1.1 MD06G1098100.v1.1
prunus_persica	Prupe.5G111800_v2.0.a1
pyrus_communis	pycom06g09350
rosa_chinensis	RchiOBHm_Chr7g0195911
rosa_laevigata	RLG00000004080
rosa_multiflora	Rmu_sc0004016.1_g000007
rosa_roxburghii	Rroxscaffold_3G00260000
rosa_rugosa	Rorug07G0027400
rosa_samantha	Rh7AG155000 Rh7BG156800 Rh7CG160500 Rh7DG156000
rosa_wichuraiana	Rw7G013250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	36, 99
AarI	CACCTGC	1 cut(s)	854
Acc36I	ACCTGC	2 cut(s)	854, 1021
AccB1I	GGYRCC	1 cut(s)	28
AciI	CCGC	2 cut(s)	830, 1462
AclWI	GGATC	3 cut(s)	216, 336, 807
AcsI	RAATTY	2 cut(s)	521, 811
AcuI	CTGAAG	2 cut(s)	215, 1167
AcyI	GRCGYC	1 cut(s)	29
AfaI	GTAC	4 cut(s)	246, 1042, 1323, 1549
AfiI	CCNNNNNNNGG	1 cut(s)	436
AflII	CTTAAG	1 cut(s)	770
AhlI	ACTAGT	1 cut(s)	304
AjuI	GAANNNNNNNTTGG	2 cut(s)	188, 220
Alw21I	GWGCWC	4 cut(s)	561, 853, 912, 999
Alw26I	GTCTC	3 cut(s)	420, 728, 1182
Alw44I	GTGCAC	2 cut(s)	557, 849
AlwI	GGATC	3 cut(s)	216, 336, 807
AoxI	GGCC	1 cut(s)	1086
ApaLI	GTGCAC	2 cut(s)	557, 849
ApeKI	GCWGC	3 cut(s)	160, 341, 664
ApoI	RAATTY	2 cut(s)	521, 811
Asp700I	GAANNNNTTC	2 cut(s)	811, 825
AspLEI	GCGC	1 cut(s)	31
AspS9I	GGNCC	1 cut(s)	1086
AsuHPI	GGTGA	2 cut(s)	451, 878
BaeGI	GKGCMC	2 cut(s)	561, 853
BanI	GGYRCC	1 cut(s)	28
BanII	GRGCYC	1 cut(s)	912
BauI	CACGAG	1 cut(s)	423
BbsI	GAAGAC	3 cut(s)	513, 680, 1434
Bbv12I	GWGCWC	4 cut(s)	561, 853, 912, 999
BbvI	GCAGC	3 cut(s)	172, 328, 676
BccI	CCATC	4 cut(s)	1072, 1304, 1362, 1396
BceAI	ACGGC	2 cut(s)	263, 1023
BcgI	CGANNNNNNTGC	2 cut(s)	506, 540
BciVI	GTATCC	1 cut(s)	327
BcoDI	GTCTC	3 cut(s)	420, 728, 1182
BcuI	ACTAGT	1 cut(s)	304
BfaI	CTAG	4 cut(s)	269, 305, 368, 668
BfmI	CTRYAG	4 cut(s)	42, 114, 342, 960
BfoI	RGCGCY	1 cut(s)	32
BfrI	CTTAAG	1 cut(s)	770
BfuAI	ACCTGC	2 cut(s)	854, 1021
BfuI	GTATCC	1 cut(s)	327
BisI	GCNGC	3 cut(s)	161, 342, 665
BlsI	GCNGC	3 cut(s)	162, 343, 666
BmgT120I	GGNCC	1 cut(s)	1086
BmiI	GGNNCC	1 cut(s)	30
BmsI	GCATC	3 cut(s)	645, 651, 850
BoxI	GACNNNNGTC	1 cut(s)	1519
BpiI	GAAGAC	3 cut(s)	513, 680, 1434
BplI	GAGNNNNNCTC	2 cut(s)	838, 870
BpuEI	CTTGAG	1 cut(s)	840
Bsa29I	ATCGAT	1 cut(s)	613
BsaHI	GRCGYC	1 cut(s)	29
BsaI	GGTCTC	2 cut(s)	420, 728
BsaJI	CCNNGG	1 cut(s)	794
BsaWI	WCCGGW	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	1 cut(s)	436
Bse1I	ACTGG	5 cut(s)	57, 598, 822, 1369, 1388
Bse3DI	GCAATG	1 cut(s)	7
BseCI	ATCGAT	1 cut(s)	613
BseDI	CCNNGG	1 cut(s)	794
BseGI	GGATG	6 cut(s)	367, 652, 660, 1324, 1373, 1407
BseLI	CCNNNNNNNGG	1 cut(s)	436
BseMI	GCAATG	1 cut(s)	7
BseMII	CTCAG	3 cut(s)	192, 426, 455
BseNI	ACTGG	5 cut(s)	57, 598, 822, 1369, 1388
BseRI	GAGGAG	2 cut(s)	170, 965
BseSI	GKGCMC	2 cut(s)	561, 853
BseXI	GCAGC	3 cut(s)	172, 328, 676
Bsh1285I	CGRYCG	1 cut(s)	607
BshFI	GGCC	1 cut(s)	1088
BshNI	GGYRCC	1 cut(s)	28
BshVI	ATCGAT	1 cut(s)	613
BsiEI	CGRYCG	1 cut(s)	607
BsiHKAI	GWGCWC	4 cut(s)	561, 853, 912, 999
BsiSI	CCGG	1 cut(s)	139
BslI	CCNNNNNNNGG	1 cut(s)	436
BsmAI	GTCTC	3 cut(s)	420, 728, 1182
BsmI	GAATGC	1 cut(s)	781
BsnI	GGCC	1 cut(s)	1088
Bso31I	GGTCTC	2 cut(s)	420, 728
Bsp1286I	GDGCHC	4 cut(s)	561, 853, 912, 999
Bsp1407I	TGTACA	1 cut(s)	1321
Bsp143I	GATC	6 cut(s)	208, 225, 328, 395, 610, 799
BspACI	CCGC	2 cut(s)	830, 1462
BspANI	GGCC	1 cut(s)	1088
BspCNI	CTCAG	3 cut(s)	193, 427, 456
BspDI	ATCGAT	1 cut(s)	613
BspLI	GGNNCC	1 cut(s)	30
BspMAI	CTGCAG	2 cut(s)	46, 346
BspMI	ACCTGC	2 cut(s)	854, 1021
BspPI	GGATC	3 cut(s)	216, 336, 807
BspQI	GCTCTTC	1 cut(s)	308
BspT107I	GGYRCC	1 cut(s)	28
BspTI	CTTAAG	1 cut(s)	770
BspTNI	GGTCTC	2 cut(s)	420, 728
BsrDI	GCAATG	1 cut(s)	7
BsrGI	TGTACA	1 cut(s)	1321
BsrI	ACTGG	5 cut(s)	57, 598, 822, 1369, 1388
BssECI	CCNNGG	1 cut(s)	794
BssMI	GATC	6 cut(s)	208, 225, 328, 395, 610, 799
BssNI	GRCGYC	1 cut(s)	29
BssSI	CACGAG	1 cut(s)	423
BssT1I	CCWWGG	1 cut(s)	794
Bst2BI	CACGAG	1 cut(s)	423
Bst4CI	ACNGT	4 cut(s)	608, 929, 1398, 1521
Bst6I	CTCTTC	2 cut(s)	308, 1024
BstACI	GRCGYC	1 cut(s)	29
BstAFI	CTTAAG	1 cut(s)	770
BstAUI	TGTACA	1 cut(s)	1321
BstC8I	GCNNGC	2 cut(s)	252, 1055
BstDEI	CTNAG	4 cut(s)	201, 435, 464, 719
BstENI	CCTNNNNNAGG	1 cut(s)	434
BstF5I	GGATG	6 cut(s)	367, 652, 660, 1324, 1373, 1407
BstH2I	RGCGCY	1 cut(s)	32
BstHHI	GCGC	1 cut(s)	31
BstKTI	GATC	6 cut(s)	211, 228, 331, 398, 613, 802
BstMAI	GTCTC	3 cut(s)	420, 728, 1182
BstMBI	GATC	6 cut(s)	208, 225, 328, 395, 610, 799
BstMCI	CGRYCG	1 cut(s)	607
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 664, 848
BstNSI	RCATGY	2 cut(s)	341, 1177
BstPAI	GACNNNNGTC	1 cut(s)	1519
BstSFI	CTRYAG	4 cut(s)	42, 114, 342, 960
BstSLI	GKGCMC	2 cut(s)	561, 853
BstV1I	GCAGC	3 cut(s)	172, 328, 676
BstV2I	GAAGAC	3 cut(s)	513, 680, 1434
Bsu15I	ATCGAT	1 cut(s)	613
BsuI	GTATCC	1 cut(s)	327
BsuRI	GGCC	1 cut(s)	1088
BsuTUI	ATCGAT	1 cut(s)	613
BtgZI	GCGATG	1 cut(s)	531
BtsCI	GGATG	6 cut(s)	367, 652, 660, 1324, 1373, 1407
BtsI	GCAGTG	1 cut(s)	895
BtsIMutI	CAGTG	6 cut(s)	179, 191, 815, 895, 934, 1403
BveI	ACCTGC	2 cut(s)	854, 1021
Cac8I	GCNNGC	2 cut(s)	252, 1055
CfoI	GCGC	1 cut(s)	31
Cfr13I	GGNCC	1 cut(s)	1086
ClaI	ATCGAT	1 cut(s)	613
Csp6I	GTAC	4 cut(s)	245, 1041, 1322, 1548
CviQI	GTAC	4 cut(s)	245, 1041, 1322, 1548
DdeI	CTNAG	4 cut(s)	201, 435, 464, 719
DinI	GGCGCC	1 cut(s)	30
DpnI	GATC	6 cut(s)	210, 227, 330, 397, 612, 801
DpnII	GATC	6 cut(s)	208, 225, 328, 395, 610, 799
Eam1104I	CTCTTC	2 cut(s)	308, 1024
EarI	CTCTTC	2 cut(s)	308, 1024
Ecl136II	GAGCTC	1 cut(s)	910
Eco130I	CCWWGG	1 cut(s)	794
Eco24I	GRGCYC	1 cut(s)	912
Eco31I	GGTCTC	2 cut(s)	420, 728
Eco32I	GATATC	1 cut(s)	1305
Eco53kI	GAGCTC	1 cut(s)	910
Eco57I	CTGAAG	2 cut(s)	215, 1167
EcoICRI	GAGCTC	1 cut(s)	910
EcoNI	CCTNNNNNAGG	1 cut(s)	434
EcoRI	GAATTC	1 cut(s)	811
EcoRV	GATATC	1 cut(s)	1305
EcoT14I	CCWWGG	1 cut(s)	794
EcoT38I	GRGCYC	1 cut(s)	912
EgeI	GGCGCC	1 cut(s)	30
EheI	GGCGCC	1 cut(s)	30
ErhI	CCWWGG	1 cut(s)	794
FalI	AAGNNNNNCTT	1 cut(s)	1537
Fnu4HI	GCNGC	3 cut(s)	161, 342, 665
FokI	GGATG	6 cut(s)	374, 659, 667, 1311, 1380, 1414
FriOI	GRGCYC	1 cut(s)	912
Fsp4HI	GCNGC	3 cut(s)	161, 342, 665
FspBI	CTAG	4 cut(s)	269, 305, 368, 668
GlaI	GCGC	1 cut(s)	30
GluI	GCNGC	3 cut(s)	161, 342, 665
HaeII	RGCGCY	1 cut(s)	32
HaeIII	GGCC	1 cut(s)	1088
HapII	CCGG	1 cut(s)	139
HhaI	GCGC	1 cut(s)	31
Hin1I	GRCGYC	1 cut(s)	29
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
HincII	GTYRAC	1 cut(s)	1524
HindII	GTYRAC	1 cut(s)	1524
HindIII	AAGCTT	2 cut(s)	1490, 1536
HinfI	GANTC	8 cut(s)	89, 619, 635, 821, 878, 893, 1375, 1439
HpaII	CCGG	1 cut(s)	139
HphI	GGTGA	2 cut(s)	451, 878
Hpy166II	GTNNAC	4 cut(s)	559, 712, 851, 1524
Hpy188III	TCNNGA	7 cut(s)	133, 223, 692, 857, 1328, 1427, 1496
Hpy8I	GTNNAC	4 cut(s)	559, 712, 851, 1524
Hpy99I	CGWCG	1 cut(s)	807
HpyAV	CCTTC	6 cut(s)	72, 190, 375, 748, 752, 1477
HpyCH4III	ACNGT	4 cut(s)	608, 929, 1398, 1521
HpyCH4IV	ACGT	1 cut(s)	167
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 664, 848
HpyF3I	CTNAG	4 cut(s)	201, 435, 464, 719
HpySE526I	ACGT	1 cut(s)	167
Hsp92I	GRCGYC	1 cut(s)	29
HspAI	GCGC	1 cut(s)	29
KasI	GGCGCC	1 cut(s)	28
Kzo9I	GATC	6 cut(s)	208, 225, 328, 395, 610, 799
LguI	GCTCTTC	1 cut(s)	308
LmnI	GCTCC	2 cut(s)	157, 605
Lsp1109I	GCAGC	3 cut(s)	172, 328, 676
LweI	GCATC	3 cut(s)	645, 651, 850
MaeI	CTAG	4 cut(s)	269, 305, 368, 668
MaeII	ACGT	1 cut(s)	167
MaeIII	GTNAC	4 cut(s)	46, 90, 890, 929
MalI	GATC	6 cut(s)	210, 227, 330, 397, 612, 801
MboI	GATC	6 cut(s)	208, 225, 328, 395, 610, 799
MhlI	GDGCHC	4 cut(s)	561, 853, 912, 999
MluCI	AATT	8 cut(s)	274, 288, 457, 521, 811, 938, 1264, 1336
Mly113I	GGCGCC	1 cut(s)	29
MlyI	GAGTC	3 cut(s)	98, 887, 1448
MmeI	TCCRAC	4 cut(s)	186, 483, 627, 1445
MroXI	GAANNNNTTC	2 cut(s)	811, 825
MseI	TTAA	9 cut(s)	72, 105, 386, 537, 771, 834, 1062, 1286, 1555
MslI	CAYNNNNRTG	1 cut(s)	216
MspCI	CTTAAG	1 cut(s)	770
MspI	CCGG	1 cut(s)	139
Mva1269I	GAATGC	1 cut(s)	781
MwoI	GCNNNNNNNGC	3 cut(s)	197, 664, 848
NarI	GGCGCC	1 cut(s)	29
NdeII	GATC	6 cut(s)	208, 225, 328, 395, 610, 799
NlaIV	GGNNCC	1 cut(s)	30
NmuCI	GTSAC	3 cut(s)	90, 890, 929
NspI	RCATGY	2 cut(s)	341, 1177
PaqCI	CACCTGC	1 cut(s)	854
PciSI	GCTCTTC	1 cut(s)	308
PcsI	WCGNNNNNNNCGW	1 cut(s)	1525
PctI	GAATGC	1 cut(s)	781
PdmI	GAANNNNTTC	2 cut(s)	811, 825
PfeI	GAWTC	5 cut(s)	619, 635, 821, 878, 1375
PkrI	GCNGC	3 cut(s)	162, 343, 666
PleI	GAGTC	3 cut(s)	97, 887, 1447
PluTI	GGCGCC	1 cut(s)	32
PpsI	GAGTC	3 cut(s)	97, 887, 1447
PshAI	GACNNNNGTC	1 cut(s)	1519
PsiI	TTATAA	2 cut(s)	36, 99
Psp124BI	GAGCTC	1 cut(s)	912
PspN4I	GGNNCC	1 cut(s)	30
PspPI	GGNCC	1 cut(s)	1086
PstI	CTGCAG	2 cut(s)	46, 346
RsaI	GTAC	4 cut(s)	246, 1042, 1323, 1549
RsaNI	GTAC	4 cut(s)	245, 1041, 1322, 1548
RseI	CAYNNNNRTG	1 cut(s)	216
SacI	GAGCTC	1 cut(s)	912
SapI	GCTCTTC	1 cut(s)	308
SaqAI	TTAA	9 cut(s)	72, 105, 386, 537, 771, 834, 1062, 1286, 1555
SatI	GCNGC	3 cut(s)	161, 342, 665
Sau3AI	GATC	6 cut(s)	208, 225, 328, 395, 610, 799
Sau96I	GGNCC	1 cut(s)	1086
SchI	GAGTC	3 cut(s)	98, 887, 1448
SduI	GDGCHC	4 cut(s)	561, 853, 912, 999
SfaNI	GCATC	3 cut(s)	645, 651, 850
SfcI	CTRYAG	4 cut(s)	42, 114, 342, 960
SfoI	GGCGCC	1 cut(s)	30
SmiMI	CAYNNNNRTG	1 cut(s)	216
SmlI	CTYRAG	2 cut(s)	770, 855
SmoI	CTYRAG	2 cut(s)	770, 855
SpeI	ACTAGT	1 cut(s)	304
Sse9I	AATT	8 cut(s)	274, 288, 457, 521, 811, 938, 1264, 1336
SsiI	CCGC	2 cut(s)	830, 1462
SspDI	GGCGCC	1 cut(s)	28
SspMI	CTAG	4 cut(s)	269, 305, 368, 668
SstI	GAGCTC	1 cut(s)	912
StyI	CCWWGG	1 cut(s)	794
TaaI	ACNGT	4 cut(s)	608, 929, 1398, 1521
TaiI	ACGT	1 cut(s)	170
TaqI	TCGA	6 cut(s)	491, 613, 745, 805, 906, 1393
TasI	AATT	8 cut(s)	274, 288, 457, 521, 811, 938, 1264, 1336
TatI	WGTACW	1 cut(s)	1321
TfiI	GAWTC	5 cut(s)	619, 635, 821, 878, 1375
Tru1I	TTAA	9 cut(s)	72, 105, 386, 537, 771, 834, 1062, 1286, 1555
Tru9I	TTAA	9 cut(s)	72, 105, 386, 537, 771, 834, 1062, 1286, 1555
TscAI	CASTG	6 cut(s)	186, 198, 822, 895, 934, 1403
TseFI	GTSAC	3 cut(s)	90, 890, 929
TseI	GCWGC	3 cut(s)	160, 341, 664
Tsp45I	GTSAC	3 cut(s)	90, 890, 929
TspGWI	ACGGA	2 cut(s)	667, 1035
TspRI	CASTG	6 cut(s)	186, 198, 822, 895, 934, 1403
Vha464I	CTTAAG	1 cut(s)	770
VneI	GTGCAC	2 cut(s)	557, 849
XagI	CCTNNNNNAGG	1 cut(s)	434
XapI	RAATTY	2 cut(s)	521, 811
XceI	RCATGY	2 cut(s)	341, 1177
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1395
XmnI	GAANNNNTTC	2 cut(s)	811, 825
XspI	CTAG	4 cut(s)	269, 305, 368, 668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.