Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0017662

Physical Location & Seq

Genomic Coordinates Reverse (-)

2864149 .. 2866038

Gene Structure 1890 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g04810.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGGTTGTGTCTGCATGAAGCAGAGACTTGACTGTGAAAACCCAACTGTTCTTGCTGCTCAAACCTATTTTAAGGTGATTGAGATAGAAACTCTGTATGAGCTGTTCAGGAAGTTAAGCAGTTCTATAGTTGATGATGGGCTTATAAGCAAAGAAGAGTTTCAGCTTGGATTGTTCAGGAACAGCAAAACACAAAGTCTCTTTGCTGACCGGATCTTCGATATGTTTGATTCAAAGCACGACGGGGTAATAGAATTCGAAGAGTTTGTTAAATGTCTAAGTGTCTTCCACCCTGAAGCACCAAGAGCAGAAAAAGTGTCATTTGCATTTCACTTATATGATAAATGGCAGATGGGCTTCATCGAACGTGACCAGGTCAAAGAAATGGTTATGGCACTTCTGAAAGAGTCTGATTTGATCTTATCTGATGAAATTGTTGAAGCCATTCTTGATAAGACATTTGAGGAAGCGGATTTAAATGGAGATGGAAGGATTGATCTGGAAGAGTGGAACAAACTAGTGGATCGAAATCCATCCTTATTGAAGAACATGACTATTCCATACCTCAGGGACATCACAACTGCTTTTCCTAGTTTTGTGCAGAAATCACACTTAGAAGATGACACAAACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005509 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0019722 GO:0019932 GO:0023052 GO:0035556 GO:0042221 GO:0043167 GO:0043169 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_1 EF-hand_4 EF-hand_5 EF-hand_7

Protein Analysis

212

Amino Acids

24.5

Weight (kDa)

4.64

Isoelectric Point (pI)

36.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_1	PF00036	70 - 94	3.1e-06	EF hand domain
EF-hand_7	PF13499	106 - 169	3.4e-08	EF-hand domain pair
EF-hand_5	PF13202	150 - 174	1.2e-08	EF hand
EF-hand_1	PF00036	150 - 174	5.1e-06	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0017662)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04810
malus_domestica	MD14G1130200.v1.1
prunus_persica	Prupe.5G122100_v2.0.a1 Prupe.5G122100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0194321
rosa_multiflora	Rmu_sc0000901.1_g000015
rosa_roxburghii	Rroxscaffold_3G00261420
rosa_rugosa	Rorug07G0015400
rosa_samantha	Rh7AG142400 Rh7CG146500 Rh7DG144100
rosa_wichuraiana	Rw7G012190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	146
AciI	CCGC	1 cut(s)	470
AclWI	GGATC	2 cut(s)	221, 531
AcsI	RAATTY	1 cut(s)	254
AcuI	CTGAAG	1 cut(s)	315
AgsI	TTSAA	3 cut(s)	234, 440, 544
AhlI	ACTAGT	1 cut(s)	517
AjnI	CCWGG	1 cut(s)	372
AluBI	AGCT	2 cut(s)	103, 166
AluI	AGCT	2 cut(s)	103, 166
Alw26I	GTCTC	2 cut(s)	19, 203
AlwI	GGATC	2 cut(s)	221, 531
ApeKI	GCWGC	1 cut(s)	56
ApoI	RAATTY	1 cut(s)	254
ArsI	GACNNNNNNTTYG	2 cut(s)	200, 232
Asp700I	GAANNNNTTC	2 cut(s)	159, 444
AsuHPI	GGTGA	1 cut(s)	88
AsuII	TTCGAA	1 cut(s)	258
AxyI	CCTNAGG	1 cut(s)	566
BbsI	GAAGAC	1 cut(s)	277
BbvI	GCAGC	1 cut(s)	43
BccI	CCATC	4 cut(s)	131, 346, 479, 541
BciT130I	CCWGG	1 cut(s)	374
BcoDI	GTCTC	2 cut(s)	19, 203
BcuI	ACTAGT	1 cut(s)	517
BfaI	CTAG	2 cut(s)	518, 591
BfmI	CTRYAG	1 cut(s)	126
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
Bme1390I	CCNGG	1 cut(s)	374
BmrFI	CCNGG	1 cut(s)	374
BpiI	GAAGAC	1 cut(s)	277
Bpu14I	TTCGAA	1 cut(s)	258
BsaBI	GATNNNNATC	1 cut(s)	528
BsaWI	WCCGGW	1 cut(s)	210
Bse21I	CCTNAGG	1 cut(s)	566
Bse8I	GATNNNNATC	1 cut(s)	528
BseBI	CCWGG	1 cut(s)	374
BseGI	GGATG	1 cut(s)	533
BseJI	GATNNNNATC	1 cut(s)	528
BseMII	CTCAG	1 cut(s)	580
BseXI	GCAGC	1 cut(s)	43
BsgI	GTGCAG	1 cut(s)	620
BsiSI	CCGG	1 cut(s)	211
BslFI	GGGAC	1 cut(s)	584
BsmAI	GTCTC	2 cut(s)	19, 203
BsmFI	GGGAC	1 cut(s)	584
Bsp119I	TTCGAA	1 cut(s)	258
Bsp143I	GATC	4 cut(s)	213, 417, 496, 523
BspACI	CCGC	1 cut(s)	470
BspCNI	CTCAG	1 cut(s)	579
BspPI	GGATC	2 cut(s)	221, 531
BspT104I	TTCGAA	1 cut(s)	258
BssMI	GATC	4 cut(s)	213, 417, 496, 523
Bst2UI	CCWGG	1 cut(s)	374
Bst4CI	ACNGT	2 cut(s)	35, 49
Bst6I	CTCTTC	3 cut(s)	150, 255, 498
BstBI	TTCGAA	1 cut(s)	258
BstDEI	CTNAG	3 cut(s)	278, 566, 613
BstF5I	GGATG	1 cut(s)	533
BstKTI	GATC	4 cut(s)	216, 420, 499, 526
BstMAI	GTCTC	2 cut(s)	19, 203
BstMBI	GATC	4 cut(s)	213, 417, 496, 523
BstMWI	GCNNNNNNNGC	1 cut(s)	305
BstNI	CCWGG	1 cut(s)	374
BstSCI	CCNGG	1 cut(s)	372
BstSFI	CTRYAG	1 cut(s)	126
BstV1I	GCAGC	1 cut(s)	43
BstV2I	GAAGAC	1 cut(s)	277
BstX2I	RGATCY	1 cut(s)	213
BstYI	RGATCY	1 cut(s)	213
Bsu36I	CCTNAGG	1 cut(s)	566
BtsCI	GGATG	1 cut(s)	533
CsiI	ACCWGGT	1 cut(s)	372
CviAII	CATG	2 cut(s)	16, 550
CviJI	RGCY	5 cut(s)	103, 142, 166, 357, 443
CviKI_1	RGCY	5 cut(s)	103, 142, 166, 357, 443
DdeI	CTNAG	3 cut(s)	278, 566, 613
DpnI	GATC	4 cut(s)	215, 419, 498, 525
DpnII	GATC	4 cut(s)	213, 417, 496, 523
DraI	TTTAAA	1 cut(s)	477
Eam1104I	CTCTTC	3 cut(s)	150, 255, 498
EarI	CTCTTC	3 cut(s)	150, 255, 498
Eco57I	CTGAAG	1 cut(s)	315
Eco81I	CCTNAGG	1 cut(s)	566
EcoRI	GAATTC	1 cut(s)	254
EcoRII	CCWGG	1 cut(s)	372
FaeI	CATG	2 cut(s)	19, 553
FalI	AAGNNNNNCTT	2 cut(s)	432, 464
FaqI	GGGAC	1 cut(s)	584
FatI	CATG	2 cut(s)	15, 549
Fnu4HI	GCNGC	1 cut(s)	57
FokI	GGATG	1 cut(s)	520
Fsp4HI	GCNGC	1 cut(s)	57
FspBI	CTAG	2 cut(s)	518, 591
GluI	GCNGC	1 cut(s)	57
HapII	CCGG	1 cut(s)	211
Hin1II	CATG	2 cut(s)	19, 553
HinfI	GANTC	2 cut(s)	230, 407
HpaII	CCGG	1 cut(s)	211
HphI	GGTGA	1 cut(s)	88
Hpy188I	TCNGA	3 cut(s)	402, 412, 427
Hpy188III	TCNNGA	4 cut(s)	109, 178, 449, 500
Hpy99I	CGWCG	1 cut(s)	245
HpyAV	CCTTC	1 cut(s)	483
HpyCH4III	ACNGT	2 cut(s)	35, 49
HpyCH4IV	ACGT	1 cut(s)	367
HpyCH4V	TGCA	3 cut(s)	15, 326, 601
HpyF10VI	GCNNNNNNNGC	1 cut(s)	305
HpyF3I	CTNAG	3 cut(s)	278, 566, 613
HpySE526I	ACGT	1 cut(s)	367
Hsp92II	CATG	2 cut(s)	19, 553
Kzo9I	GATC	4 cut(s)	213, 417, 496, 523
LpnPI	CCDG	8 cut(s)	94, 163, 224, 306, 359, 386, 485, 553
Lsp1109I	GCAGC	1 cut(s)	43
MabI	ACCWGGT	1 cut(s)	372
MaeI	CTAG	2 cut(s)	518, 591
MaeII	ACGT	1 cut(s)	367
MaeIII	GTNAC	1 cut(s)	368
MalI	GATC	4 cut(s)	215, 419, 498, 525
MboI	GATC	4 cut(s)	213, 417, 496, 523
MboII	GAAGA	7 cut(s)	167, 208, 272, 277, 515, 556, 629
MflI	RGATCY	1 cut(s)	213
MluCI	AATT	2 cut(s)	254, 432
MlyI	GAGTC	1 cut(s)	416
MnlI	CCTC	2 cut(s)	457, 575
MroXI	GAANNNNTTC	2 cut(s)	159, 444
MseI	TTAA	4 cut(s)	72, 116, 270, 476
MslI	CAYNNNNRTG	1 cut(s)	336
MspI	CCGG	1 cut(s)	211
MspR9I	CCNGG	1 cut(s)	374
MvaI	CCWGG	1 cut(s)	374
MwoI	GCNNNNNNNGC	1 cut(s)	305
NdeII	GATC	4 cut(s)	213, 417, 496, 523
NlaIII	CATG	2 cut(s)	19, 553
NmuCI	GTSAC	1 cut(s)	368
NspV	TTCGAA	1 cut(s)	258
PdmI	GAANNNNTTC	2 cut(s)	159, 444
PfeI	GAWTC	1 cut(s)	230
PflFI	GACNNNGTC	1 cut(s)	374
PkrI	GCNGC	1 cut(s)	58
PleI	GAGTC	1 cut(s)	415
PpsI	GAGTC	1 cut(s)	415
PsiI	TTATAA	1 cut(s)	146
Psp6I	CCWGG	1 cut(s)	372
PspGI	CCWGG	1 cut(s)	372
PsrI	GAACNNNNNNTAC	2 cut(s)	89, 121
PsuI	RGATCY	1 cut(s)	213
PsyI	GACNNNGTC	1 cut(s)	374
RseI	CAYNNNNRTG	1 cut(s)	336
SaqAI	TTAA	4 cut(s)	72, 116, 270, 476
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	4 cut(s)	213, 417, 496, 523
SchI	GAGTC	1 cut(s)	416
ScrFI	CCNGG	1 cut(s)	374
SetI	ASST	7 cut(s)	68, 78, 105, 168, 370, 378, 567
SexAI	ACCWGGT	1 cut(s)	372
SfcI	CTRYAG	1 cut(s)	126
SfuI	TTCGAA	1 cut(s)	258
SmiI	ATTTAAAT	1 cut(s)	477
SmiMI	CAYNNNNRTG	1 cut(s)	336
SpeI	ACTAGT	1 cut(s)	517
Sse9I	AATT	2 cut(s)	254, 432
SsiI	CCGC	1 cut(s)	470
SspMI	CTAG	2 cut(s)	518, 591
StyD4I	CCNGG	1 cut(s)	372
SwaI	ATTTAAAT	1 cut(s)	477
TaaI	ACNGT	2 cut(s)	35, 49
TaiI	ACGT	1 cut(s)	370
TaqI	TCGA	4 cut(s)	219, 258, 363, 526
TasI	AATT	2 cut(s)	254, 432
TfiI	GAWTC	1 cut(s)	230
Tru1I	TTAA	4 cut(s)	72, 116, 270, 476
Tru9I	TTAA	4 cut(s)	72, 116, 270, 476
TseFI	GTSAC	1 cut(s)	368
TseI	GCWGC	1 cut(s)	56
Tsp45I	GTSAC	1 cut(s)	368
TspDTI	ATGAA	3 cut(s)	32, 349, 444
Tth111I	GACNNNGTC	1 cut(s)	374
XapI	RAATTY	1 cut(s)	254
XmnI	GAANNNNTTC	2 cut(s)	159, 444
XspI	CTAG	2 cut(s)	518, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.