Rh7AG142400

Calcineurin B-like protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Forward (+)
11464402 .. 11466643
2242 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG142400.1

Sequence Viewer

Length: 576 bp
ATGGGCTGTGTCTGCATGAAGCAGAGACTTGAATGTGAAAACCCAACTGTTCTTCTTGCTTCTCAAACCTATTTTAAGGTAAATGAGATAGAAAATTTGTATGAGCTGTTCAGGAAGTTAAGCAGTTCTATAGTTGATGATGGGCTTATAAGCAAAGAAGAGTTTCAGCTCGGATTGTTCAGGAACAGCAAAACACAGAGTCTCTTTGCAGACAGGATCTTCGACATGTTTGATTCAAAGCACGACGGGGTAATAGAATTCGAAGAGTTTGTTAAATGTCTAAGTGTCTTCCACCCTGAAGCACCAAGAGCAGAAAAAGTGTCATTTGCATTTCACTTGTATGATATATGGCAGACGGGATTCATTGAACGCGATGAGGTCAAAGAAATGGTTATGGCGCTTCTGAAAGAGTCAGACTTGATCTTATCTGATGACATTGTTGAAGCCATTCTTGATAAGACATTCAAGGAAGCGGATTTAAATGGAGATGGAAAGATTGATCTGGAAGAGTGGAACCAACTCGTGGATCAAAATCCATCCTTATTGAAGAACATGACAATTCCATACCTCAAGTAA

Protein Analysis

191

Amino Acids

22.15

Weight (kDa)

4.59

Isoelectric Point (pI)

32.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_1 PF00036 71 - 95 2.7e-06 EF hand domain
EF-hand_7 PF13499 107 - 170 2.4e-09 EF-hand domain pair
EF-hand_1 PF00036 151 - 175 8.5e-07 EF hand domain
EF-hand_5 PF13202 151 - 175 3.6e-09 EF hand
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017662)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g04810
malus_domestica MD14G1130200.v1.1
prunus_persica Prupe.5G122100_v2.0.a1 Prupe.5G122100_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0194321
rosa_multiflora Rmu_sc0000901.1_g000015
rosa_roxburghii Rroxscaffold_3G00261420
rosa_rugosa Rorug07G0015400
rosa_samantha Rh7AG142400 Rh7CG146500 Rh7DG144100
rosa_wichuraiana Rw7G012190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 149
AccB7I CCANNNNNTGG 1 cut(s) 523
AccII CGCG 1 cut(s) 372
AciI CCGC 1 cut(s) 473
AclWI GGATC 2 cut(s) 224, 534
AcsI RAATTY 2 cut(s) 94, 257
AcuI CTGAAG 1 cut(s) 318
AfiI CCNNNNNNNGG 1 cut(s) 523
AflIII ACRYGT 1 cut(s) 225
AgsI TTSAA 6 cut(s) 32, 237, 368, 443, 466, 547
AluBI AGCT 2 cut(s) 106, 169
AluI AGCT 2 cut(s) 106, 169
Alw26I GTCTC 2 cut(s) 19, 206
AlwI GGATC 2 cut(s) 224, 534
ApoI RAATTY 2 cut(s) 94, 257
ArsI GACNNNNNNTTYG 2 cut(s) 203, 235
Asp700I GAANNNNTTC 2 cut(s) 162, 447
AspLEI GCGC 1 cut(s) 400
AsuII TTCGAA 1 cut(s) 261
BauI CACGAG 1 cut(s) 521
BbsI GAAGAC 1 cut(s) 280
BccI CCATC 3 cut(s) 134, 482, 544
BcoDI GTCTC 2 cut(s) 19, 206
BfmI CTRYAG 1 cut(s) 129
BfoI RGCGCY 1 cut(s) 401
BmiI GGNNCC 1 cut(s) 515
BpiI GAAGAC 1 cut(s) 280
Bpu14I TTCGAA 1 cut(s) 261
BpuEI CTTGAG 1 cut(s) 554
BsaBI GATNNNNATC 1 cut(s) 531
Bsc4I CCNNNNNNNGG 1 cut(s) 523
Bse8I GATNNNNATC 1 cut(s) 531
BseGI GGATG 1 cut(s) 536
BseJI GATNNNNATC 1 cut(s) 531
BseLI CCNNNNNNNGG 1 cut(s) 523
Bsh1236I CGCG 1 cut(s) 372
BslI CCNNNNNNNGG 1 cut(s) 523
BsmAI GTCTC 2 cut(s) 19, 206
Bsp119I TTCGAA 1 cut(s) 261
Bsp143I GATC 4 cut(s) 216, 420, 499, 526
BspACI CCGC 1 cut(s) 473
BspFNI CGCG 1 cut(s) 372
BspLI GGNNCC 1 cut(s) 515
BspPI GGATC 2 cut(s) 224, 534
BspT104I TTCGAA 1 cut(s) 261
BssMI GATC 4 cut(s) 216, 420, 499, 526
BssSI CACGAG 1 cut(s) 521
Bst2BI CACGAG 1 cut(s) 521
Bst4CI ACNGT 1 cut(s) 49
Bst6I CTCTTC 3 cut(s) 153, 258, 501
BstBI TTCGAA 1 cut(s) 261
BstDEI CTNAG 1 cut(s) 281
BstF5I GGATG 1 cut(s) 536
BstFNI CGCG 1 cut(s) 372
BstH2I RGCGCY 1 cut(s) 401
BstHHI GCGC 1 cut(s) 400
BstKTI GATC 4 cut(s) 219, 423, 502, 529
BstMAI GTCTC 2 cut(s) 19, 206
BstMBI GATC 4 cut(s) 216, 420, 499, 526
BstMWI GCNNNNNNNGC 2 cut(s) 12, 308
BstNSI RCATGY 1 cut(s) 229
BstSFI CTRYAG 1 cut(s) 129
BstUI CGCG 1 cut(s) 372
BstV2I GAAGAC 1 cut(s) 280
BstX2I RGATCY 1 cut(s) 216
BstYI RGATCY 1 cut(s) 216
BtgZI GCGATG 1 cut(s) 387
BtsCI GGATG 1 cut(s) 536
CfoI GCGC 1 cut(s) 400
CviAII CATG 3 cut(s) 16, 226, 553
CviJI RGCY 5 cut(s) 6, 106, 145, 169, 446
CviKI_1 RGCY 5 cut(s) 6, 106, 145, 169, 446
DdeI CTNAG 1 cut(s) 281
DpnI GATC 4 cut(s) 218, 422, 501, 528
DpnII GATC 4 cut(s) 216, 420, 499, 526
DraI TTTAAA 1 cut(s) 480
Eam1104I CTCTTC 3 cut(s) 153, 258, 501
EarI CTCTTC 3 cut(s) 153, 258, 501
Eco57I CTGAAG 1 cut(s) 318
EcoRI GAATTC 1 cut(s) 257
FaeI CATG 3 cut(s) 19, 229, 556
FalI AAGNNNNNCTT 2 cut(s) 435, 467
FatI CATG 3 cut(s) 15, 225, 552
FokI GGATG 1 cut(s) 523
GlaI GCGC 1 cut(s) 399
HaeII RGCGCY 1 cut(s) 401
HhaI GCGC 1 cut(s) 400
Hin1II CATG 3 cut(s) 19, 229, 556
Hin6I GCGC 1 cut(s) 398
HinP1I GCGC 1 cut(s) 398
HinfI GANTC 4 cut(s) 199, 233, 360, 410
Hpy188I TCNGA 4 cut(s) 173, 405, 415, 430
Hpy188III TCNNGA 4 cut(s) 112, 181, 452, 503
Hpy99I CGWCG 1 cut(s) 248
HpyCH4III ACNGT 1 cut(s) 49
HpyCH4V TGCA 3 cut(s) 15, 209, 329
HpyF10VI GCNNNNNNNGC 2 cut(s) 12, 308
HpyF3I CTNAG 1 cut(s) 281
Hsp92II CATG 3 cut(s) 19, 229, 556
HspAI GCGC 1 cut(s) 398
Kzo9I GATC 4 cut(s) 216, 420, 499, 526
LpnPI CCDG 5 cut(s) 97, 166, 199, 309, 488
MalI GATC 4 cut(s) 218, 422, 501, 528
MboI GATC 4 cut(s) 216, 420, 499, 526
MboII GAAGA 7 cut(s) 44, 170, 211, 275, 280, 518, 559
MflI RGATCY 1 cut(s) 216
MluCI AATT 3 cut(s) 94, 257, 558
MlyI GAGTC 2 cut(s) 208, 419
MnlI CCTC 1 cut(s) 370
MroXI GAANNNNTTC 2 cut(s) 162, 447
MseI TTAA 4 cut(s) 75, 119, 273, 479
MslI CAYNNNNRTG 1 cut(s) 339
MvnI CGCG 1 cut(s) 372
MwoI GCNNNNNNNGC 2 cut(s) 12, 308
NdeII GATC 4 cut(s) 216, 420, 499, 526
NlaIII CATG 3 cut(s) 19, 229, 556
NlaIV GGNNCC 1 cut(s) 515
NspI RCATGY 1 cut(s) 229
NspV TTCGAA 1 cut(s) 261
PciI ACATGT 1 cut(s) 225
PdmI GAANNNNTTC 2 cut(s) 162, 447
PfeI GAWTC 2 cut(s) 233, 360
PflMI CCANNNNNTGG 1 cut(s) 523
PleI GAGTC 2 cut(s) 207, 418
PpsI GAGTC 2 cut(s) 207, 418
PscI ACATGT 1 cut(s) 225
PsiI TTATAA 1 cut(s) 149
PspN4I GGNNCC 1 cut(s) 515
PsrI GAACNNNNNNTAC 2 cut(s) 92, 124
PsuI RGATCY 1 cut(s) 216
RseI CAYNNNNRTG 1 cut(s) 339
SaqAI TTAA 4 cut(s) 75, 119, 273, 479
Sau3AI GATC 4 cut(s) 216, 420, 499, 526
SchI GAGTC 2 cut(s) 208, 419
SetI ASST 6 cut(s) 71, 81, 108, 171, 381, 570
SfcI CTRYAG 1 cut(s) 129
SfuI TTCGAA 1 cut(s) 261
SmiI ATTTAAAT 1 cut(s) 480
SmiMI CAYNNNNRTG 1 cut(s) 339
SmlI CTYRAG 1 cut(s) 569
SmoI CTYRAG 1 cut(s) 569
Sse9I AATT 3 cut(s) 94, 257, 558
SsiI CCGC 1 cut(s) 473
SwaI ATTTAAAT 1 cut(s) 480
TaaI ACNGT 1 cut(s) 49
TaqI TCGA 2 cut(s) 222, 261
TasI AATT 3 cut(s) 94, 257, 558
TfiI GAWTC 2 cut(s) 233, 360
Tru1I TTAA 4 cut(s) 75, 119, 273, 479
Tru9I TTAA 4 cut(s) 75, 119, 273, 479
TspDTI ATGAA 2 cut(s) 32, 352
Van91I CCANNNNNTGG 1 cut(s) 523
XapI RAATTY 2 cut(s) 94, 257
XceI RCATGY 1 cut(s) 229
XmnI GAANNNNTTC 2 cut(s) 162, 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.