Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000901.1

Orthogroup ID

OG0017662

Physical Location & Seq

Genomic Coordinates Forward (+)

72444 .. 73932

Gene Structure 1489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000901.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

atgggctgtgtctgcatgaagcagagacttgaatgtgaaaactcaactgttcttgcttctcaaacctatttcaaggtgaatgagatagaaaatttgtatgagctgttcaggaagttaagcagttctatagtcgatgatgggcttataagcaaagaagagtttcagctcggattgttcaggaacagcaaaacacagagtctctttgcagacaggatcttcgacatgtttgattcaaagcacgacggggtaatagaattcgaagagtttgttaaatgtctaagtgtcttccaccctgaagcaccaagagcagaaaaagtgtcatttgcatttcacttgtacgatatatggcagacgggattcattgaacgcgatgaggtcaaagaaatggttatggcgcttctgaaagagtcagacttgatcttatctgacgacattgttgaagccattcttgataagacattcaaggaagcggatttaaatggagatggaaagattgatctggaagagtggaaccaactcgtggatcaaaatccatccttattgaagaacatgacaattccatacctcaaggacatcacaactgcttttcatagttttgtgctgagatcagacattgaagatgacaccaagtactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005509 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0019722 GO:0019932 GO:0023052 GO:0035556 GO:0042221 GO:0043167 GO:0043169 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_1 EF-hand_4 EF-hand_5 EF-hand_7

Protein Analysis

211

Amino Acids

24.48

Weight (kDa)

4.55

Isoelectric Point (pI)

35.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017662)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04810
malus_domestica	MD14G1130200.v1.1
prunus_persica	Prupe.5G122100_v2.0.a1 Prupe.5G122100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0194321
rosa_multiflora	Rmu_sc0000901.1_g000015
rosa_roxburghii	Rroxscaffold_3G00261420
rosa_rugosa	Rorug07G0015400
rosa_samantha	Rh7AG142400 Rh7CG146500 Rh7DG144100
rosa_wichuraiana	Rw7G012190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	146
AccB7I	CCANNNNNTGG	1 cut(s)	520
AccII	CGCG	1 cut(s)	369
AciI	CCGC	1 cut(s)	470
AclWI	GGATC	2 cut(s)	221, 531
AcsI	RAATTY	2 cut(s)	91, 254
AcuI	CTGAAG	1 cut(s)	315
AfaI	GTAC	2 cut(s)	338, 632
AfiI	CCNNNNNNNGG	1 cut(s)	520
AflIII	ACRYGT	1 cut(s)	222
AgsI	TTSAA	8 cut(s)	32, 73, 234, 365, 440, 463, 544, 617
AluBI	AGCT	2 cut(s)	103, 166
AluI	AGCT	2 cut(s)	103, 166
Alw26I	GTCTC	2 cut(s)	19, 203
AlwI	GGATC	2 cut(s)	221, 531
ApoI	RAATTY	2 cut(s)	91, 254
ArsI	GACNNNNNNTTYG	2 cut(s)	200, 232
Asp700I	GAANNNNTTC	2 cut(s)	159, 444
AspLEI	GCGC	1 cut(s)	397
AsuHPI	GGTGA	1 cut(s)	88
AsuII	TTCGAA	1 cut(s)	258
BauI	CACGAG	1 cut(s)	518
BbsI	GAAGAC	1 cut(s)	277
BccI	CCATC	3 cut(s)	131, 479, 541
BcoDI	GTCTC	2 cut(s)	19, 203
BfmI	CTRYAG	1 cut(s)	126
BfoI	RGCGCY	1 cut(s)	398
BmcAI	AGTACT	1 cut(s)	632
BmiI	GGNNCC	1 cut(s)	512
BpiI	GAAGAC	1 cut(s)	277
Bpu14I	TTCGAA	1 cut(s)	258
BpuEI	CTTGAG	1 cut(s)	551
BsaBI	GATNNNNATC	1 cut(s)	528
Bsc4I	CCNNNNNNNGG	1 cut(s)	520
Bse8I	GATNNNNATC	1 cut(s)	528
BseGI	GGATG	1 cut(s)	533
BseJI	GATNNNNATC	1 cut(s)	528
BseLI	CCNNNNNNNGG	1 cut(s)	520
BseMII	CTCAG	1 cut(s)	593
Bsh1236I	CGCG	1 cut(s)	369
BslI	CCNNNNNNNGG	1 cut(s)	520
BsmAI	GTCTC	2 cut(s)	19, 203
Bsp119I	TTCGAA	1 cut(s)	258
Bsp143I	GATC	5 cut(s)	213, 417, 496, 523, 605
BspACI	CCGC	1 cut(s)	470
BspCNI	CTCAG	1 cut(s)	594
BspFNI	CGCG	1 cut(s)	369
BspLI	GGNNCC	1 cut(s)	512
BspPI	GGATC	2 cut(s)	221, 531
BspT104I	TTCGAA	1 cut(s)	258
BssMI	GATC	5 cut(s)	213, 417, 496, 523, 605
BssSI	CACGAG	1 cut(s)	518
Bst2BI	CACGAG	1 cut(s)	518
Bst4CI	ACNGT	1 cut(s)	49
Bst6I	CTCTTC	3 cut(s)	150, 255, 498
BstBI	TTCGAA	1 cut(s)	258
BstDEI	CTNAG	2 cut(s)	278, 602
BstF5I	GGATG	1 cut(s)	533
BstFNI	CGCG	1 cut(s)	369
BstH2I	RGCGCY	1 cut(s)	398
BstHHI	GCGC	1 cut(s)	397
BstKTI	GATC	5 cut(s)	216, 420, 499, 526, 608
BstMAI	GTCTC	2 cut(s)	19, 203
BstMBI	GATC	5 cut(s)	213, 417, 496, 523, 605
BstMWI	GCNNNNNNNGC	2 cut(s)	12, 305
BstNSI	RCATGY	1 cut(s)	226
BstSFI	CTRYAG	1 cut(s)	126
BstUI	CGCG	1 cut(s)	369
BstV2I	GAAGAC	1 cut(s)	277
BstX2I	RGATCY	1 cut(s)	213
BstYI	RGATCY	1 cut(s)	213
BtgZI	GCGATG	1 cut(s)	384
BtsCI	GGATG	1 cut(s)	533
CfoI	GCGC	1 cut(s)	397
Csp6I	GTAC	2 cut(s)	337, 631
CviAII	CATG	3 cut(s)	16, 223, 550
CviJI	RGCY	5 cut(s)	6, 103, 142, 166, 443
CviKI_1	RGCY	5 cut(s)	6, 103, 142, 166, 443
CviQI	GTAC	2 cut(s)	337, 631
DdeI	CTNAG	2 cut(s)	278, 602
DpnI	GATC	5 cut(s)	215, 419, 498, 525, 607
DpnII	GATC	5 cut(s)	213, 417, 496, 523, 605
DraI	TTTAAA	1 cut(s)	477
Eam1104I	CTCTTC	3 cut(s)	150, 255, 498
EarI	CTCTTC	3 cut(s)	150, 255, 498
Eco57I	CTGAAG	1 cut(s)	315
EcoRI	GAATTC	1 cut(s)	254
FaeI	CATG	3 cut(s)	19, 226, 553
FalI	AAGNNNNNCTT	2 cut(s)	432, 464
FatI	CATG	3 cut(s)	15, 222, 549
FokI	GGATG	1 cut(s)	520
GlaI	GCGC	1 cut(s)	396
HaeII	RGCGCY	1 cut(s)	398
HhaI	GCGC	1 cut(s)	397
Hin1II	CATG	3 cut(s)	19, 226, 553
Hin6I	GCGC	1 cut(s)	395
HinP1I	GCGC	1 cut(s)	395
HinfI	GANTC	4 cut(s)	196, 230, 357, 407
HphI	GGTGA	1 cut(s)	88
Hpy188I	TCNGA	5 cut(s)	170, 402, 412, 427, 610
Hpy188III	TCNNGA	4 cut(s)	109, 178, 449, 500
Hpy99I	CGWCG	1 cut(s)	245
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4V	TGCA	3 cut(s)	15, 206, 326
HpyF10VI	GCNNNNNNNGC	2 cut(s)	12, 305
HpyF3I	CTNAG	2 cut(s)	278, 602
Hsp92II	CATG	3 cut(s)	19, 226, 553
HspAI	GCGC	1 cut(s)	395
Kzo9I	GATC	5 cut(s)	213, 417, 496, 523, 605
LpnPI	CCDG	5 cut(s)	94, 163, 196, 306, 485
MalI	GATC	5 cut(s)	215, 419, 498, 525, 607
MboI	GATC	5 cut(s)	213, 417, 496, 523, 605
MboII	GAAGA	7 cut(s)	167, 208, 272, 277, 515, 556, 629
MflI	RGATCY	1 cut(s)	213
MluCI	AATT	3 cut(s)	91, 254, 555
MlyI	GAGTC	2 cut(s)	205, 416
MnlI	CCTC	2 cut(s)	367, 575
MroXI	GAANNNNTTC	2 cut(s)	159, 444
MseI	TTAA	3 cut(s)	116, 270, 476
MvnI	CGCG	1 cut(s)	369
MwoI	GCNNNNNNNGC	2 cut(s)	12, 305
NdeII	GATC	5 cut(s)	213, 417, 496, 523, 605
NlaIII	CATG	3 cut(s)	19, 226, 553
NlaIV	GGNNCC	1 cut(s)	512
NspI	RCATGY	1 cut(s)	226
NspV	TTCGAA	1 cut(s)	258
PciI	ACATGT	1 cut(s)	222
PdmI	GAANNNNTTC	2 cut(s)	159, 444
PfeI	GAWTC	2 cut(s)	230, 357
PflMI	CCANNNNNTGG	1 cut(s)	520
PleI	GAGTC	2 cut(s)	204, 415
PpsI	GAGTC	2 cut(s)	204, 415
PscI	ACATGT	1 cut(s)	222
PsiI	TTATAA	1 cut(s)	146
PspN4I	GGNNCC	1 cut(s)	512
PsrI	GAACNNNNNNTAC	2 cut(s)	89, 121
PsuI	RGATCY	1 cut(s)	213
RsaI	GTAC	2 cut(s)	338, 632
RsaNI	GTAC	2 cut(s)	337, 631
SaqAI	TTAA	3 cut(s)	116, 270, 476
Sau3AI	GATC	5 cut(s)	213, 417, 496, 523, 605
ScaI	AGTACT	1 cut(s)	632
SchI	GAGTC	2 cut(s)	205, 416
SetI	ASST	6 cut(s)	68, 78, 105, 168, 378, 567
SfcI	CTRYAG	1 cut(s)	126
SfuI	TTCGAA	1 cut(s)	258
SmiI	ATTTAAAT	1 cut(s)	477
SmlI	CTYRAG	1 cut(s)	566
SmoI	CTYRAG	1 cut(s)	566
Sse9I	AATT	3 cut(s)	91, 254, 555
SsiI	CCGC	1 cut(s)	470
SwaI	ATTTAAAT	1 cut(s)	477
TaaI	ACNGT	1 cut(s)	49
TaqI	TCGA	3 cut(s)	132, 219, 258
TasI	AATT	3 cut(s)	91, 254, 555
TatI	WGTACW	1 cut(s)	630
TfiI	GAWTC	2 cut(s)	230, 357
Tru1I	TTAA	3 cut(s)	116, 270, 476
Tru9I	TTAA	3 cut(s)	116, 270, 476
TspDTI	ATGAA	3 cut(s)	32, 349, 578
Van91I	CCANNNNNTGG	1 cut(s)	520
XapI	RAATTY	2 cut(s)	91, 254
XceI	RCATGY	1 cut(s)	226
XmnI	GAANNNNTTC	2 cut(s)	159, 444
ZrmI	AGTACT	1 cut(s)	632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.