FvH4_5g06300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0018439
Physical Location & Seq
Forward (+)
3709098 .. 3709690
593 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g06300.t1

Sequence Viewer

Length: 372 bp
ATGAGGAGAACAAGCTACGACTACCCTGCCAAACACCAAACTGGTTCAGACTACTATTCTCATGTCAATAGGATGGCTAGAGCACCTAGTGTGCTCACCGATGTCCCTCACTTTGGGCATGCCCTGTTCAACAACAAACCGGTGCAGTTGAATGAAGAGCACCGCGGTGGTCACTACCAGGGGCAGCAGCACCACAACAACCCTGAGTCTGGTAGGAGTGTTGTTGAAGTGACTGAAACAGTGGCACAATGTGACAGGAATGGGAACTGCGTGGTTGTCGAAGAGAGAGTTGATGTCGAAGCTGATGACTACATCCAGCAGAAGCATAAGGGGTTCGAGTTGTTCAAATGGAGGACCTTCAAACCACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

14.31

Weight (kDa)

7.13

Isoelectric Point (pI)

42.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018439)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g06300
prunus_persica Prupe.5G165500_v2.0.a1 Prupe.6G157600_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0192561
rosa_laevigata RLG00000004352
rosa_roxburghii Rroxscaffold_3G00262930
rosa_rugosa Rorug07G0002100
rosa_samantha Rh7AG126700 Rh7BG128900 Rh7CG130700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 165
AciI CCGC 2 cut(s) 163, 165
AdeI CACNNNGTG 2 cut(s) 89, 251
AfiI CCNNNNNNNGG 2 cut(s) 113, 209
AgeI ACCGGT 1 cut(s) 139
AgsI TTSAA 5 cut(s) 130, 151, 227, 346, 361
AjnI CCWGG 1 cut(s) 177
AleI CACNNNNGTG 1 cut(s) 165
AluBI AGCT 2 cut(s) 15, 302
AluI AGCT 2 cut(s) 15, 302
Alw21I GWGCWC 3 cut(s) 85, 96, 162
ApeKI GCWGC 2 cut(s) 184, 187
AsiGI ACCGGT 1 cut(s) 139
AspS9I GGNCC 1 cut(s) 354
AsuHPI GGTGA 1 cut(s) 88
AvaII GGWCC 1 cut(s) 354
Bbv12I GWGCWC 3 cut(s) 85, 96, 162
BbvI GCAGC 2 cut(s) 196, 199
BccI CCATC 1 cut(s) 67
BcgI CGANNNNNNTGC 2 cut(s) 8, 42
BciT130I CCWGG 1 cut(s) 179
BfaI CTAG 2 cut(s) 78, 87
BisI GCNGC 2 cut(s) 185, 188
BlsI GCNGC 2 cut(s) 186, 189
Bme1390I CCNGG 1 cut(s) 179
Bme18I GGWCC 1 cut(s) 354
BmgT120I GGNCC 1 cut(s) 354
BmrFI CCNGG 1 cut(s) 179
BsaJI CCNNGG 2 cut(s) 163, 178
BsaWI WCCGGW 1 cut(s) 139
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 209
Bse118I RCCGGY 1 cut(s) 139
Bse1I ACTGG 1 cut(s) 46
BseBI CCWGG 1 cut(s) 179
BseDI CCNNGG 2 cut(s) 163, 178
BseGI GGATG 2 cut(s) 78, 312
BseLI CCNNNNNNNGG 2 cut(s) 113, 209
BseMII CTCAG 1 cut(s) 195
BseNI ACTGG 1 cut(s) 46
BseRI GAGGAG 1 cut(s) 19
BseXI GCAGC 2 cut(s) 196, 199
BsgI GTGCAG 1 cut(s) 164
Bsh1236I CGCG 1 cut(s) 165
BshTI ACCGGT 1 cut(s) 139
BsiHKAI GWGCWC 3 cut(s) 85, 96, 162
BsiSI CCGG 1 cut(s) 140
BslFI GGGAC 1 cut(s) 89
BslI CCNNNNNNNGG 2 cut(s) 113, 209
BsmFI GGGAC 1 cut(s) 89
Bsp1286I GDGCHC 3 cut(s) 85, 96, 162
BspACI CCGC 2 cut(s) 163, 165
BspCNI CTCAG 1 cut(s) 196
BspFNI CGCG 1 cut(s) 165
BspQI GCTCTTC 1 cut(s) 150
BsrFI RCCGGY 1 cut(s) 139
BsrI ACTGG 1 cut(s) 46
BssAI RCCGGY 1 cut(s) 139
BssECI CCNNGG 2 cut(s) 163, 178
Bst2UI CCWGG 1 cut(s) 179
Bst4CI ACNGT 1 cut(s) 241
Bst6I CTCTTC 2 cut(s) 150, 276
BstC8I GCNNGC 1 cut(s) 120
BstDEI CTNAG 1 cut(s) 204
BstDSI CCRYGG 1 cut(s) 163
BstF5I GGATG 2 cut(s) 78, 312
BstFNI CGCG 1 cut(s) 165
BstNI CCWGG 1 cut(s) 179
BstNSI RCATGY 1 cut(s) 122
BstSCI CCNGG 1 cut(s) 177
BstUI CGCG 1 cut(s) 165
BstV1I GCAGC 2 cut(s) 196, 199
BtgI CCRYGG 1 cut(s) 163
BtsCI GGATG 2 cut(s) 78, 312
BtsIMutI CAGTG 1 cut(s) 246
Cac8I GCNNGC 1 cut(s) 120
Cfr10I RCCGGY 1 cut(s) 139
Cfr13I GGNCC 1 cut(s) 354
Cfr42I CCGCGG 1 cut(s) 166
CspAI ACCGGT 1 cut(s) 139
CviAII CATG 2 cut(s) 62, 119
CviJI RGCY 3 cut(s) 15, 77, 302
CviKI_1 RGCY 3 cut(s) 15, 77, 302
DdeI CTNAG 1 cut(s) 204
DraIII CACNNNGTG 2 cut(s) 89, 251
Eam1104I CTCTTC 2 cut(s) 150, 276
EarI CTCTTC 2 cut(s) 150, 276
Eco47I GGWCC 1 cut(s) 354
EcoO109I RGGNCCY 1 cut(s) 354
EcoRII CCWGG 1 cut(s) 177
FaeI CATG 2 cut(s) 65, 122
FaiI YATR 3 cut(s) 63, 120, 327
FaqI GGGAC 1 cut(s) 89
FatI CATG 2 cut(s) 61, 118
Fnu4HI GCNGC 2 cut(s) 185, 188
FokI GGATG 2 cut(s) 85, 299
Fsp4HI GCNGC 2 cut(s) 185, 188
FspBI CTAG 2 cut(s) 78, 87
GluI GCNGC 2 cut(s) 185, 188
HapII CCGG 1 cut(s) 140
Hin1II CATG 2 cut(s) 65, 122
HinfI GANTC 1 cut(s) 206
HpaII CCGG 1 cut(s) 140
HphI GGTGA 1 cut(s) 88
Hpy188I TCNGA 1 cut(s) 49
HpyAV CCTTC 1 cut(s) 367
HpyCH4III ACNGT 1 cut(s) 241
HpyCH4IV ACGT 1 cut(s) 367
HpyCH4V TGCA 1 cut(s) 145
HpyF3I CTNAG 1 cut(s) 204
HpySE526I ACGT 1 cut(s) 367
Hsp92II CATG 2 cut(s) 65, 122
KspI CCGCGG 1 cut(s) 166
LguI GCTCTTC 1 cut(s) 150
Lsp1109I GCAGC 2 cut(s) 196, 199
MaeI CTAG 2 cut(s) 78, 87
MaeII ACGT 1 cut(s) 367
MaeIII GTNAC 3 cut(s) 170, 229, 251
MboII GAAGA 2 cut(s) 167, 293
MhlI GDGCHC 3 cut(s) 85, 96, 162
MlyI GAGTC 1 cut(s) 215
MnlI CCTC 2 cut(s) 117, 345
MslI CAYNNNNRTG 1 cut(s) 165
MspA1I CMGCKG 1 cut(s) 165
MspI CCGG 1 cut(s) 140
MspR9I CCNGG 1 cut(s) 179
MvaI CCWGG 1 cut(s) 179
MvnI CGCG 1 cut(s) 165
NlaIII CATG 2 cut(s) 65, 122
NmuCI GTSAC 3 cut(s) 170, 229, 251
NspI RCATGY 1 cut(s) 122
OliI CACNNNNGTG 1 cut(s) 165
PaeI GCATGC 1 cut(s) 122
PciSI GCTCTTC 1 cut(s) 150
PinAI ACCGGT 1 cut(s) 139
PkrI GCNGC 2 cut(s) 186, 189
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
PpuMI RGGWCCY 1 cut(s) 354
Psp5II RGGWCCY 1 cut(s) 354
Psp6I CCWGG 1 cut(s) 177
PspGI CCWGG 1 cut(s) 177
PspPI GGNCC 1 cut(s) 354
PspPPI RGGWCCY 1 cut(s) 354
RseI CAYNNNNRTG 1 cut(s) 165
SacII CCGCGG 1 cut(s) 166
SapI GCTCTTC 1 cut(s) 150
SatI GCNGC 2 cut(s) 185, 188
Sau96I GGNCC 1 cut(s) 354
SchI GAGTC 1 cut(s) 215
ScrFI CCNGG 1 cut(s) 179
SduI GDGCHC 3 cut(s) 85, 96, 162
SetI ASST 5 cut(s) 17, 88, 304, 359, 370
Sfr303I CCGCGG 1 cut(s) 166
SgrBI CCGCGG 1 cut(s) 166
SinI GGWCC 1 cut(s) 354
SmiMI CAYNNNNRTG 1 cut(s) 165
SphI GCATGC 1 cut(s) 122
SsiI CCGC 2 cut(s) 163, 165
SspMI CTAG 2 cut(s) 78, 87
StyD4I CCNGG 1 cut(s) 177
TaaI ACNGT 1 cut(s) 241
TaiI ACGT 1 cut(s) 370
TaqI TCGA 3 cut(s) 279, 297, 336
TscAI CASTG 1 cut(s) 246
TseFI GTSAC 3 cut(s) 170, 229, 251
TseI GCWGC 2 cut(s) 184, 187
Tsp45I GTSAC 3 cut(s) 170, 229, 251
TspDTI ATGAA 1 cut(s) 168
TspRI CASTG 1 cut(s) 246
VpaK11BI GGWCC 1 cut(s) 354
XceI RCATGY 1 cut(s) 122
XspI CTAG 2 cut(s) 78, 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.