Prupe.6G157600_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
14117187 .. 14117845
659 bp
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UTR
Exon/CDS
Intron
Prupe.6G157600.1

Sequence Viewer

Length: 357 bp
ATGAGCAGAAGCCACAAGTACCCAACCAAGCACCAAAATGGCTCAGATTATTATTCTCATGTTCAAAGGATGGCAAGAGCCCCTAGTGTTCTCACTGAAGTCCCTCACTATAGCCAGACACTTTTCAACAACCAGACCAGTGTAAGAGAGGACAATGGCGAGTATGAGCACCAGCAAAAGCAGCACATCCCTGAGGCTCACGAGTCAGTTGAAGTGACTGAGAGAGTCACACAGTATGACAAGAACGGGAACTACGTCATTTTTGAGGAAACCGTTGATGTTGAAGCTGACAACTTCATCGAGGGCAAGCACAAGGGATTTGAATTGTGCAAGTGGAAGACCTTCAAGGGGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.89

Weight (kDa)

6.12

Isoelectric Point (pI)

43.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018439)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g06300
prunus_persica Prupe.5G165500_v2.0.a1 Prupe.6G157600_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0192561
rosa_laevigata RLG00000004352
rosa_roxburghii Rroxscaffold_3G00262930
rosa_rugosa Rorug07G0002100
rosa_samantha Rh7AG126700 Rh7BG128900 Rh7CG130700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 117
AfaI GTAC 1 cut(s) 20
AfiI CCNNNNNNNGG 1 cut(s) 348
AgsI TTSAA 6 cut(s) 65, 127, 212, 284, 323, 346
AluBI AGCT 1 cut(s) 287
AluI AGCT 1 cut(s) 287
Alw21I GWGCWC 1 cut(s) 171
ApeKI GCWGC 1 cut(s) 181
Asp700I GAANNNNTTC 1 cut(s) 341
AxyI CCTNAGG 1 cut(s) 192
BanII GRGCYC 1 cut(s) 82
BauI CACGAG 1 cut(s) 200
BbsI GAAGAC 1 cut(s) 344
Bbv12I GWGCWC 1 cut(s) 171
BbvI GCAGC 1 cut(s) 193
BccI CCATC 1 cut(s) 64
BfaI CTAG 1 cut(s) 84
BfmI CTRYAG 1 cut(s) 109
BisI GCNGC 1 cut(s) 182
BlsI GCNGC 1 cut(s) 183
BpiI GAAGAC 1 cut(s) 344
Bsc4I CCNNNNNNNGG 1 cut(s) 348
Bse1I ACTGG 1 cut(s) 138
Bse21I CCTNAGG 1 cut(s) 192
BseGI GGATG 2 cut(s) 75, 186
BseLI CCNNNNNNNGG 1 cut(s) 348
BseMII CTCAG 3 cut(s) 57, 183, 210
BseNI ACTGG 1 cut(s) 138
BseXI GCAGC 1 cut(s) 193
BsiHKAI GWGCWC 1 cut(s) 171
BslFI GGGAC 1 cut(s) 86
BslI CCNNNNNNNGG 1 cut(s) 348
BsmFI GGGAC 1 cut(s) 86
Bsp1286I GDGCHC 2 cut(s) 82, 171
BspCNI CTCAG 3 cut(s) 56, 184, 211
BsrI ACTGG 1 cut(s) 138
BssSI CACGAG 1 cut(s) 200
Bst2BI CACGAG 1 cut(s) 200
Bst4CI ACNGT 2 cut(s) 234, 274
BstC8I GCNNGC 1 cut(s) 308
BstDEI CTNAG 3 cut(s) 43, 192, 219
BstF5I GGATG 2 cut(s) 75, 186
BstMWI GCNNNNNNNGC 1 cut(s) 181
BstSFI CTRYAG 1 cut(s) 109
BstV1I GCAGC 1 cut(s) 193
BstV2I GAAGAC 1 cut(s) 344
Bsu36I CCTNAGG 1 cut(s) 192
BtsCI GGATG 2 cut(s) 75, 186
BtsIMutI CAGTG 2 cut(s) 93, 145
Cac8I GCNNGC 1 cut(s) 308
Csp6I GTAC 1 cut(s) 19
CviAII CATG 1 cut(s) 59
CviJI RGCY 6 cut(s) 12, 42, 80, 114, 197, 287
CviKI_1 RGCY 6 cut(s) 12, 42, 80, 114, 197, 287
CviQI GTAC 1 cut(s) 19
DdeI CTNAG 3 cut(s) 43, 192, 219
Eco24I GRGCYC 1 cut(s) 82
Eco57I CTGAAG 1 cut(s) 117
Eco81I CCTNAGG 1 cut(s) 192
EcoT38I GRGCYC 1 cut(s) 82
FaeI CATG 1 cut(s) 62
FaiI YATR 4 cut(s) 60, 111, 165, 237
FaqI GGGAC 1 cut(s) 86
FatI CATG 1 cut(s) 58
Fnu4HI GCNGC 1 cut(s) 182
FokI GGATG 2 cut(s) 82, 173
FriOI GRGCYC 1 cut(s) 82
Fsp4HI GCNGC 1 cut(s) 182
FspBI CTAG 1 cut(s) 84
GluI GCNGC 1 cut(s) 182
Hin1II CATG 1 cut(s) 62
HinfI GANTC 2 cut(s) 203, 225
Hpy188I TCNGA 1 cut(s) 46
Hpy188III TCNNGA 1 cut(s) 200
HpyAV CCTTC 1 cut(s) 352
HpyCH4III ACNGT 2 cut(s) 234, 274
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 1 cut(s) 330
HpyF10VI GCNNNNNNNGC 1 cut(s) 181
HpyF3I CTNAG 3 cut(s) 43, 192, 219
HpySE526I ACGT 1 cut(s) 255
Hsp92II CATG 1 cut(s) 62
LpnPI CCDG 5 cut(s) 128, 146, 151, 185, 204
Lsp1109I GCAGC 1 cut(s) 193
MaeI CTAG 1 cut(s) 84
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 2 cut(s) 214, 226
MboII GAAGA 1 cut(s) 349
MhlI GDGCHC 2 cut(s) 82, 171
MluCI AATT 1 cut(s) 323
MlyI GAGTC 2 cut(s) 212, 234
MnlI CCTC 5 cut(s) 114, 142, 187, 259, 295
MroXI GAANNNNTTC 1 cut(s) 341
MseI TTAA 1 cut(s) 355
MslI CAYNNNNRTG 1 cut(s) 36
MwoI GCNNNNNNNGC 1 cut(s) 181
NlaIII CATG 1 cut(s) 62
NmuCI GTSAC 2 cut(s) 214, 226
PcsI WCGNNNNNNNCGW 1 cut(s) 252
PdmI GAANNNNTTC 1 cut(s) 341
PkrI GCNGC 1 cut(s) 183
PleI GAGTC 2 cut(s) 211, 233
PpsI GAGTC 2 cut(s) 211, 233
PsrI GAACNNNNNNTAC 2 cut(s) 236, 268
RsaI GTAC 1 cut(s) 20
RsaNI GTAC 1 cut(s) 19
RseI CAYNNNNRTG 1 cut(s) 36
SaqAI TTAA 1 cut(s) 355
SatI GCNGC 1 cut(s) 182
SchI GAGTC 2 cut(s) 212, 234
SduI GDGCHC 2 cut(s) 82, 171
SetI ASST 3 cut(s) 258, 289, 344
SfcI CTRYAG 1 cut(s) 109
SmiMI CAYNNNNRTG 1 cut(s) 36
Sse9I AATT 1 cut(s) 323
SspMI CTAG 1 cut(s) 84
TaaI ACNGT 2 cut(s) 234, 274
TaiI ACGT 1 cut(s) 258
TaqI TCGA 1 cut(s) 300
TasI AATT 1 cut(s) 323
Tru1I TTAA 1 cut(s) 355
Tru9I TTAA 1 cut(s) 355
TscAI CASTG 2 cut(s) 100, 145
TseFI GTSAC 2 cut(s) 214, 226
TseI GCWGC 1 cut(s) 181
Tsp45I GTSAC 2 cut(s) 214, 226
TspDTI ATGAA 1 cut(s) 286
TspRI CASTG 2 cut(s) 100, 145
XmnI GAANNNNTTC 1 cut(s) 341
XspI CTAG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.