Rh7AG126700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0018439
Physical Location & Seq
Reverse (-)
9937123 .. 9937488
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG126700.1

Sequence Viewer

Length: 366 bp
ATGAGGAGATCAAGCTACGACCACCCTGCCAGACACCAAACTGGCTCAGACTACTATTCTCATGTTAATAGGATGGCTAGAGCACCTAGTGTTCTGACTGACGTCCCTCACTACGGGGCCCTATTCAGCAACAACCCAGTGCCTTCAAATGAAGCCCATCGTGGTGGTCACTATGATCAGCACCACCAGCACAACCCTGAGCCTGGTAGGAATGTTGTTCAAGTGACTGAAACAGTGGCACAATGTGACAGGGATGGGAACTGCGTGGTTATTGAAGAAAAAGTTGATGTCCAAGCTGATGACTACATCCAGCAGAAGCACAAGGGGTTTGAGTTGTTCAAGTGGAAGACCTTCAAACCGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.97

Weight (kDa)

7.16

Isoelectric Point (pI)

50.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018439)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g06300
prunus_persica Prupe.5G165500_v2.0.a1 Prupe.6G157600_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0192561
rosa_laevigata RLG00000004352
rosa_roxburghii Rroxscaffold_3G00262930
rosa_rugosa Rorug07G0002100
rosa_samantha Rh7AG126700 Rh7BG128900 Rh7CG130700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 105
AccII CGCG 1 cut(s) 361
AciI CCGC 1 cut(s) 359
AcyI GRCGYC 1 cut(s) 102
AdeI CACNNNGTG 2 cut(s) 89, 245
AfiI CCNNNNNNNGG 2 cut(s) 113, 203
AgsI TTSAA 5 cut(s) 147, 221, 275, 340, 355
AjnI CCWGG 1 cut(s) 202
AluBI AGCT 2 cut(s) 15, 296
AluI AGCT 2 cut(s) 15, 296
Alw21I GWGCWC 1 cut(s) 85
AoxI GGCC 1 cut(s) 117
ApaI GGGCCC 1 cut(s) 121
Asp700I GAANNNNTTC 1 cut(s) 350
AspS9I GGNCC 2 cut(s) 117, 118
BaeGI GKGCMC 1 cut(s) 121
BanII GRGCYC 1 cut(s) 121
BbsI GAAGAC 1 cut(s) 353
Bbv12I GWGCWC 1 cut(s) 85
BccI CCATC 3 cut(s) 67, 165, 248
BcgI CGANNNNNNTGC 2 cut(s) 8, 42
BciT130I CCWGG 1 cut(s) 204
BclI TGATCA 1 cut(s) 175
BfaI CTAG 2 cut(s) 78, 87
Bme1390I CCNGG 1 cut(s) 204
BmgT120I GGNCC 2 cut(s) 117, 118
BmiI GGNNCC 2 cut(s) 118, 119
BmrFI CCNGG 1 cut(s) 204
BmrI ACTGGG 1 cut(s) 131
BmuI ACTGGG 1 cut(s) 131
BoxI GACNNNNGTC 1 cut(s) 101
BpiI GAAGAC 1 cut(s) 353
Bpu10I CCTNAGC 1 cut(s) 198
BsaHI GRCGYC 1 cut(s) 102
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 203
Bse1I ACTGG 2 cut(s) 46, 137
BseBI CCWGG 1 cut(s) 204
BseGI GGATG 3 cut(s) 78, 259, 306
BseLI CCNNNNNNNGG 2 cut(s) 113, 203
BseMII CTCAG 2 cut(s) 60, 189
BseNI ACTGG 2 cut(s) 46, 137
BseRI GAGGAG 1 cut(s) 19
BseSI GKGCMC 1 cut(s) 121
Bsh1236I CGCG 1 cut(s) 361
BshFI GGCC 1 cut(s) 119
BsiHKAI GWGCWC 1 cut(s) 85
BslFI GGGAC 1 cut(s) 89
BslI CCNNNNNNNGG 2 cut(s) 113, 203
BsmFI GGGAC 1 cut(s) 89
BsnI GGCC 1 cut(s) 119
Bsp120I GGGCCC 1 cut(s) 117
Bsp1286I GDGCHC 2 cut(s) 85, 121
Bsp143I GATC 2 cut(s) 8, 175
BspACI CCGC 1 cut(s) 359
BspANI GGCC 1 cut(s) 119
BspCNI CTCAG 2 cut(s) 59, 190
BspFNI CGCG 1 cut(s) 361
BspLI GGNNCC 2 cut(s) 118, 119
BsrI ACTGG 2 cut(s) 46, 137
BssMI GATC 2 cut(s) 8, 175
BssNI GRCGYC 1 cut(s) 102
Bst2UI CCWGG 1 cut(s) 204
Bst4CI ACNGT 1 cut(s) 235
BstACI GRCGYC 1 cut(s) 102
BstDEI CTNAG 2 cut(s) 46, 198
BstF5I GGATG 3 cut(s) 78, 259, 306
BstFNI CGCG 1 cut(s) 361
BstKTI GATC 2 cut(s) 11, 178
BstMBI GATC 2 cut(s) 8, 175
BstMWI GCNNNNNNNGC 1 cut(s) 187
BstNI CCWGG 1 cut(s) 204
BstPAI GACNNNNGTC 1 cut(s) 101
BstSCI CCNGG 1 cut(s) 202
BstSLI GKGCMC 1 cut(s) 121
BstUI CGCG 1 cut(s) 361
BstV2I GAAGAC 1 cut(s) 353
BstXI CCANNNNNNTGG 1 cut(s) 164
BsuRI GGCC 1 cut(s) 119
BtsCI GGATG 3 cut(s) 78, 259, 306
BtsIMutI CAGTG 2 cut(s) 144, 240
Cfr13I GGNCC 2 cut(s) 117, 118
CviAII CATG 1 cut(s) 62
CviJI RGCY 7 cut(s) 15, 45, 77, 119, 155, 202, 296
CviKI_1 RGCY 7 cut(s) 15, 45, 77, 119, 155, 202, 296
DdeI CTNAG 2 cut(s) 46, 198
DpnI GATC 2 cut(s) 10, 177
DpnII GATC 2 cut(s) 8, 175
DraIII CACNNNGTG 2 cut(s) 89, 245
Eco24I GRGCYC 1 cut(s) 121
EcoO109I RGGNCCY 2 cut(s) 117, 118
EcoRII CCWGG 1 cut(s) 202
EcoT38I GRGCYC 1 cut(s) 121
FaeI CATG 1 cut(s) 65
FaiI YATR 2 cut(s) 63, 174
FaqI GGGAC 1 cut(s) 89
FatI CATG 1 cut(s) 61
FbaI TGATCA 1 cut(s) 175
FokI GGATG 3 cut(s) 85, 266, 293
FriOI GRGCYC 1 cut(s) 121
FspBI CTAG 2 cut(s) 78, 87
HaeIII GGCC 1 cut(s) 119
Hin1I GRCGYC 1 cut(s) 102
Hin1II CATG 1 cut(s) 65
Hpy188I TCNGA 2 cut(s) 49, 96
HpyAV CCTTC 2 cut(s) 153, 361
HpyCH4III ACNGT 1 cut(s) 235
HpyCH4IV ACGT 1 cut(s) 102
HpyF10VI GCNNNNNNNGC 1 cut(s) 187
HpyF3I CTNAG 2 cut(s) 46, 198
HpySE526I ACGT 1 cut(s) 102
Hsp92I GRCGYC 1 cut(s) 102
Hsp92II CATG 1 cut(s) 65
Ksp22I TGATCA 1 cut(s) 175
Kzo9I GATC 2 cut(s) 8, 175
MaeI CTAG 2 cut(s) 78, 87
MaeII ACGT 1 cut(s) 102
MaeIII GTNAC 3 cut(s) 167, 223, 245
MalI GATC 2 cut(s) 10, 177
MboI GATC 2 cut(s) 8, 175
MboII GAAGA 2 cut(s) 287, 358
MhlI GDGCHC 2 cut(s) 85, 121
MnlI CCTC 1 cut(s) 117
MroXI GAANNNNTTC 1 cut(s) 350
MseI TTAA 1 cut(s) 66
MslI CAYNNNNRTG 1 cut(s) 162
MspR9I CCNGG 1 cut(s) 204
MvaI CCWGG 1 cut(s) 204
MvnI CGCG 1 cut(s) 361
MwoI GCNNNNNNNGC 1 cut(s) 187
NdeII GATC 2 cut(s) 8, 175
NlaIII CATG 1 cut(s) 65
NlaIV GGNNCC 2 cut(s) 118, 119
NmuCI GTSAC 3 cut(s) 167, 223, 245
PdmI GAANNNNTTC 1 cut(s) 350
PshAI GACNNNNGTC 1 cut(s) 101
Psp6I CCWGG 1 cut(s) 202
PspGI CCWGG 1 cut(s) 202
PspN4I GGNNCC 2 cut(s) 118, 119
PspOMI GGGCCC 1 cut(s) 117
PspPI GGNCC 2 cut(s) 117, 118
RseI CAYNNNNRTG 1 cut(s) 162
SaqAI TTAA 1 cut(s) 66
Sau3AI GATC 2 cut(s) 8, 175
Sau96I GGNCC 2 cut(s) 117, 118
ScrFI CCNGG 1 cut(s) 204
SduI GDGCHC 2 cut(s) 85, 121
SetI ASST 5 cut(s) 17, 88, 105, 298, 353
SmiMI CAYNNNNRTG 1 cut(s) 162
SsiI CCGC 1 cut(s) 359
SspMI CTAG 2 cut(s) 78, 87
StyD4I CCNGG 1 cut(s) 202
TaaI ACNGT 1 cut(s) 235
TaiI ACGT 1 cut(s) 105
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TscAI CASTG 2 cut(s) 144, 240
TseFI GTSAC 3 cut(s) 167, 223, 245
Tsp45I GTSAC 3 cut(s) 167, 223, 245
TspDTI ATGAA 1 cut(s) 165
TspRI CASTG 2 cut(s) 144, 240
XmnI GAANNNNTTC 1 cut(s) 350
XspI CTAG 2 cut(s) 78, 87
ZraI GACGTC 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.