Rroxscaffold_3G00262930

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0018439
Physical Location & Seq
Forward (+)
56898887 .. 56899267
381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00262930.1

Sequence Viewer

Length: 381 bp
ATGAGGAGATCAAGCTACGACCACCCTGCCAGACACCAAACTGGCTCAGACTACTATTCTCATGTTAATAGGATGGCTAGAGCACCTAGTGTTCTGACTGACGTCCCTCACTACGGGACCCTATTCAGCAACAACCCAGTGCCTTCAAATGAAGCCCATCGCGGTGGTCACTATGATCAGCACCAGCAGAGGCAGCACCACCAGCACAACCCTGAGCCTGGTAGGAATGTTGTTCAAGTGACTGAAACAGTGGCACAATGTGACAGGGATGGGAACTGCGTGGTTATTGAAGAAAAAGTTGATGTCCAAGCTGATGACTACATCCAGCAGAAGCACAAGGGGTTTGAGTTGTTCAAGTGGAAGACCTTCAAACCGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

14.67

Weight (kDa)

7.9

Isoelectric Point (pI)

52.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018439)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g06300
prunus_persica Prupe.5G165500_v2.0.a1 Prupe.6G157600_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0192561
rosa_laevigata RLG00000004352
rosa_roxburghii Rroxscaffold_3G00262930
rosa_rugosa Rorug07G0002100
rosa_samantha Rh7AG126700 Rh7BG128900 Rh7CG130700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 105
AccII CGCG 2 cut(s) 162, 376
AciI CCGC 2 cut(s) 162, 374
AcyI GRCGYC 1 cut(s) 102
AdeI CACNNNGTG 2 cut(s) 89, 260
AfiI CCNNNNNNNGG 2 cut(s) 113, 218
AgsI TTSAA 5 cut(s) 147, 236, 290, 355, 370
AjnI CCWGG 1 cut(s) 217
AluBI AGCT 2 cut(s) 15, 311
AluI AGCT 2 cut(s) 15, 311
Alw21I GWGCWC 1 cut(s) 85
ApeKI GCWGC 1 cut(s) 193
Asp700I GAANNNNTTC 1 cut(s) 365
AspS9I GGNCC 1 cut(s) 117
AvaII GGWCC 1 cut(s) 117
BbsI GAAGAC 1 cut(s) 368
Bbv12I GWGCWC 1 cut(s) 85
BbvI GCAGC 1 cut(s) 205
BccI CCATC 3 cut(s) 67, 165, 263
BcgI CGANNNNNNTGC 2 cut(s) 8, 42
BciT130I CCWGG 1 cut(s) 219
BclI TGATCA 1 cut(s) 175
BfaI CTAG 2 cut(s) 78, 87
BisI GCNGC 1 cut(s) 194
BlsI GCNGC 1 cut(s) 195
Bme1390I CCNGG 1 cut(s) 219
Bme18I GGWCC 1 cut(s) 117
BmgT120I GGNCC 1 cut(s) 117
BmiI GGNNCC 2 cut(s) 118, 119
BmrFI CCNGG 1 cut(s) 219
BmrI ACTGGG 1 cut(s) 131
BmuI ACTGGG 1 cut(s) 131
BoxI GACNNNNGTC 1 cut(s) 101
BpiI GAAGAC 1 cut(s) 368
Bpu10I CCTNAGC 1 cut(s) 213
BsaHI GRCGYC 1 cut(s) 102
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 218
Bse1I ACTGG 2 cut(s) 46, 137
BseBI CCWGG 1 cut(s) 219
BseGI GGATG 3 cut(s) 78, 274, 321
BseLI CCNNNNNNNGG 2 cut(s) 113, 218
BseMII CTCAG 2 cut(s) 60, 204
BseNI ACTGG 2 cut(s) 46, 137
BseRI GAGGAG 1 cut(s) 19
BseXI GCAGC 1 cut(s) 205
Bsh1236I CGCG 2 cut(s) 162, 376
BsiHKAI GWGCWC 1 cut(s) 85
BslFI GGGAC 2 cut(s) 89, 130
BslI CCNNNNNNNGG 2 cut(s) 113, 218
BsmFI GGGAC 2 cut(s) 89, 130
Bsp1286I GDGCHC 1 cut(s) 85
Bsp143I GATC 2 cut(s) 8, 175
BspACI CCGC 2 cut(s) 162, 374
BspCNI CTCAG 2 cut(s) 59, 205
BspFNI CGCG 2 cut(s) 162, 376
BspLI GGNNCC 2 cut(s) 118, 119
BsrI ACTGG 2 cut(s) 46, 137
BssMI GATC 2 cut(s) 8, 175
BssNI GRCGYC 1 cut(s) 102
Bst2UI CCWGG 1 cut(s) 219
Bst4CI ACNGT 1 cut(s) 250
BstACI GRCGYC 1 cut(s) 102
BstDEI CTNAG 2 cut(s) 46, 213
BstF5I GGATG 3 cut(s) 78, 274, 321
BstFNI CGCG 2 cut(s) 162, 376
BstKTI GATC 2 cut(s) 11, 178
BstMBI GATC 2 cut(s) 8, 175
BstMWI GCNNNNNNNGC 2 cut(s) 193, 202
BstNI CCWGG 1 cut(s) 219
BstPAI GACNNNNGTC 1 cut(s) 101
BstSCI CCNGG 1 cut(s) 217
BstUI CGCG 2 cut(s) 162, 376
BstV1I GCAGC 1 cut(s) 205
BstV2I GAAGAC 1 cut(s) 368
BstXI CCANNNNNNTGG 1 cut(s) 164
BtgZI GCGATG 1 cut(s) 143
BtsCI GGATG 3 cut(s) 78, 274, 321
BtsIMutI CAGTG 2 cut(s) 144, 255
Cfr13I GGNCC 1 cut(s) 117
CviAII CATG 1 cut(s) 62
CviJI RGCY 6 cut(s) 15, 45, 77, 155, 217, 311
CviKI_1 RGCY 6 cut(s) 15, 45, 77, 155, 217, 311
DdeI CTNAG 2 cut(s) 46, 213
DpnI GATC 2 cut(s) 10, 177
DpnII GATC 2 cut(s) 8, 175
DraIII CACNNNGTG 2 cut(s) 89, 260
Eco47I GGWCC 1 cut(s) 117
EcoO109I RGGNCCY 1 cut(s) 117
EcoRII CCWGG 1 cut(s) 217
FaeI CATG 1 cut(s) 65
FaiI YATR 2 cut(s) 63, 174
FaqI GGGAC 2 cut(s) 89, 130
FatI CATG 1 cut(s) 61
FbaI TGATCA 1 cut(s) 175
Fnu4HI GCNGC 1 cut(s) 194
FokI GGATG 3 cut(s) 85, 281, 308
Fsp4HI GCNGC 1 cut(s) 194
FspBI CTAG 2 cut(s) 78, 87
GluI GCNGC 1 cut(s) 194
Hin1I GRCGYC 1 cut(s) 102
Hin1II CATG 1 cut(s) 65
Hpy188I TCNGA 2 cut(s) 49, 96
HpyAV CCTTC 2 cut(s) 153, 376
HpyCH4III ACNGT 1 cut(s) 250
HpyCH4IV ACGT 1 cut(s) 102
HpyF10VI GCNNNNNNNGC 2 cut(s) 193, 202
HpyF3I CTNAG 2 cut(s) 46, 213
HpySE526I ACGT 1 cut(s) 102
Hsp92I GRCGYC 1 cut(s) 102
Hsp92II CATG 1 cut(s) 65
KflI GGGWCCC 1 cut(s) 117
Ksp22I TGATCA 1 cut(s) 175
Kzo9I GATC 2 cut(s) 8, 175
Lsp1109I GCAGC 1 cut(s) 205
MaeI CTAG 2 cut(s) 78, 87
MaeII ACGT 1 cut(s) 102
MaeIII GTNAC 3 cut(s) 167, 238, 260
MalI GATC 2 cut(s) 10, 177
MboI GATC 2 cut(s) 8, 175
MboII GAAGA 2 cut(s) 302, 373
MhlI GDGCHC 1 cut(s) 85
MnlI CCTC 2 cut(s) 117, 183
MroXI GAANNNNTTC 1 cut(s) 365
MseI TTAA 1 cut(s) 66
MslI CAYNNNNRTG 1 cut(s) 162
MspR9I CCNGG 1 cut(s) 219
MvaI CCWGG 1 cut(s) 219
MvnI CGCG 2 cut(s) 162, 376
MwoI GCNNNNNNNGC 2 cut(s) 193, 202
NdeII GATC 2 cut(s) 8, 175
NlaIII CATG 1 cut(s) 65
NlaIV GGNNCC 2 cut(s) 118, 119
NmuCI GTSAC 3 cut(s) 167, 238, 260
PdmI GAANNNNTTC 1 cut(s) 365
PkrI GCNGC 1 cut(s) 195
PpuMI RGGWCCY 1 cut(s) 117
PshAI GACNNNNGTC 1 cut(s) 101
Psp5II RGGWCCY 1 cut(s) 117
Psp6I CCWGG 1 cut(s) 217
PspGI CCWGG 1 cut(s) 217
PspN4I GGNNCC 2 cut(s) 118, 119
PspPI GGNCC 1 cut(s) 117
PspPPI RGGWCCY 1 cut(s) 117
RseI CAYNNNNRTG 1 cut(s) 162
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 1 cut(s) 194
Sau3AI GATC 2 cut(s) 8, 175
Sau96I GGNCC 1 cut(s) 117
ScrFI CCNGG 1 cut(s) 219
SduI GDGCHC 1 cut(s) 85
SetI ASST 5 cut(s) 17, 88, 105, 313, 368
SinI GGWCC 1 cut(s) 117
SmiMI CAYNNNNRTG 1 cut(s) 162
SsiI CCGC 2 cut(s) 162, 374
SspMI CTAG 2 cut(s) 78, 87
StyD4I CCNGG 1 cut(s) 217
TaaI ACNGT 1 cut(s) 250
TaiI ACGT 1 cut(s) 105
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TscAI CASTG 2 cut(s) 144, 255
TseFI GTSAC 3 cut(s) 167, 238, 260
TseI GCWGC 1 cut(s) 193
Tsp45I GTSAC 3 cut(s) 167, 238, 260
TspDTI ATGAA 1 cut(s) 165
TspRI CASTG 2 cut(s) 144, 255
VpaK11BI GGWCC 1 cut(s) 117
XmnI GAANNNNTTC 1 cut(s) 365
XspI CTAG 2 cut(s) 78, 87
ZraI GACGTC 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.