Prupe.5G165500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0018439
Physical Location & Seq
Reverse (-)
14372153 .. 14373278
1126 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G165500.1

Sequence Viewer

Length: 387 bp
ATGCTCCTAATACTTTCAACTTGTGATTGCAGAAAAATGAGCAGAAGCTACGAGTACCCAACCAAGCGCCAAAATGGCTCGGATTATTATTCTCATGTTCAAAGGATCGTAAGAGCCCCTAGTGTTCTCACTGAAGTCCCTCACTATGGCCAAACCCTTTTCAACAACCAAGCCAGTGTAAGAGAGGACTATGGCGGTTACCAGGAAAAGCAGCGCATCCCTGAGGCTCACAAGTCAGTTAAAGTGACTGAGAGAGTCACACAGAGTGACAAGAATGGGAACCGCGTCGTTTTTGAGGAAACCGTCGATGTTCAAGCTGACGGCTTCATCGAGGACAAGCACAAGGGATTTGAATTGTGCAAGTGGAAGACCTTCAAAGGGCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.91

Weight (kDa)

8.97

Isoelectric Point (pI)

47.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018439)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g06300
prunus_persica Prupe.5G165500_v2.0.a1 Prupe.6G157600_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0192561
rosa_laevigata RLG00000004352
rosa_roxburghii Rroxscaffold_3G00262930
rosa_rugosa Rorug07G0002100
rosa_samantha Rh7AG126700 Rh7BG128900 Rh7CG130700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 285
AciI CCGC 2 cut(s) 195, 283
AclWI GGATC 1 cut(s) 113
AcoI YGGCCR 1 cut(s) 148
AcuI CTGAAG 1 cut(s) 153
AdeI CACNNNGTG 1 cut(s) 266
AfaI GTAC 1 cut(s) 56
AfiI CCNNNNNNNGG 2 cut(s) 146, 378
AgsI TTSAA 6 cut(s) 18, 101, 163, 314, 353, 376
AjnI CCWGG 1 cut(s) 201
AluBI AGCT 2 cut(s) 48, 317
AluI AGCT 2 cut(s) 48, 317
AlwI GGATC 1 cut(s) 113
AoxI GGCC 1 cut(s) 148
ApeKI GCWGC 1 cut(s) 211
Asp700I GAANNNNTTC 1 cut(s) 371
AspLEI GCGC 2 cut(s) 69, 216
AxyI CCTNAGG 1 cut(s) 222
BalI TGGCCA 1 cut(s) 150
BanII GRGCYC 1 cut(s) 118
BbsI GAAGAC 1 cut(s) 374
BbvI GCAGC 1 cut(s) 223
BceAI ACGGC 1 cut(s) 337
BciT130I CCWGG 1 cut(s) 203
BfaI CTAG 1 cut(s) 120
BfoI RGCGCY 1 cut(s) 70
BglI GCCNNNNNGGC 1 cut(s) 75
BisI GCNGC 1 cut(s) 212
BlsI GCNGC 1 cut(s) 213
Bme1390I CCNGG 1 cut(s) 203
BmiI GGNNCC 1 cut(s) 281
BmrFI CCNGG 1 cut(s) 203
BmsI GCATC 1 cut(s) 225
BpiI GAAGAC 1 cut(s) 374
Bsc4I CCNNNNNNNGG 2 cut(s) 146, 378
Bse1I ACTGG 1 cut(s) 174
Bse21I CCTNAGG 1 cut(s) 222
BseBI CCWGG 1 cut(s) 203
BseGI GGATG 1 cut(s) 216
BseLI CCNNNNNNNGG 2 cut(s) 146, 378
BseMII CTCAG 2 cut(s) 213, 240
BseNI ACTGG 1 cut(s) 174
BseXI GCAGC 1 cut(s) 223
Bsh1236I CGCG 1 cut(s) 285
BshFI GGCC 1 cut(s) 150
BslFI GGGAC 1 cut(s) 122
BslI CCNNNNNNNGG 2 cut(s) 146, 378
BsmFI GGGAC 1 cut(s) 122
BsnI GGCC 1 cut(s) 150
Bsp1286I GDGCHC 1 cut(s) 118
Bsp143I GATC 1 cut(s) 105
BspACI CCGC 2 cut(s) 195, 283
BspANI GGCC 1 cut(s) 150
BspCNI CTCAG 2 cut(s) 214, 241
BspFNI CGCG 1 cut(s) 285
BspLI GGNNCC 1 cut(s) 281
BspPI GGATC 1 cut(s) 113
BsrI ACTGG 1 cut(s) 174
BssMI GATC 1 cut(s) 105
Bst2UI CCWGG 1 cut(s) 203
Bst4CI ACNGT 1 cut(s) 304
BstDEI CTNAG 2 cut(s) 222, 249
BstEII GGTNACC 1 cut(s) 197
BstF5I GGATG 1 cut(s) 216
BstFNI CGCG 1 cut(s) 285
BstH2I RGCGCY 1 cut(s) 70
BstHHI GCGC 2 cut(s) 69, 216
BstKTI GATC 1 cut(s) 108
BstMBI GATC 1 cut(s) 105
BstMWI GCNNNNNNNGC 1 cut(s) 75
BstNI CCWGG 1 cut(s) 203
BstPI GGTNACC 1 cut(s) 197
BstSCI CCNGG 1 cut(s) 201
BstUI CGCG 1 cut(s) 285
BstV1I GCAGC 1 cut(s) 223
BstV2I GAAGAC 1 cut(s) 374
Bsu36I CCTNAGG 1 cut(s) 222
BsuRI GGCC 1 cut(s) 150
BtsCI GGATG 1 cut(s) 216
BtsIMutI CAGTG 2 cut(s) 129, 181
CfoI GCGC 2 cut(s) 69, 216
CseI GACGC 1 cut(s) 274
Csp6I GTAC 1 cut(s) 55
CviAII CATG 1 cut(s) 95
CviJI RGCY 8 cut(s) 48, 78, 116, 150, 173, 227, 317, 324
CviKI_1 RGCY 8 cut(s) 48, 78, 116, 150, 173, 227, 317, 324
CviQI GTAC 1 cut(s) 55
DdeI CTNAG 2 cut(s) 222, 249
DpnI GATC 1 cut(s) 107
DpnII GATC 1 cut(s) 105
DraIII CACNNNGTG 1 cut(s) 266
EaeI YGGCCR 1 cut(s) 148
Eco24I GRGCYC 1 cut(s) 118
Eco57I CTGAAG 1 cut(s) 153
Eco81I CCTNAGG 1 cut(s) 222
Eco91I GGTNACC 1 cut(s) 197
EcoO65I GGTNACC 1 cut(s) 197
EcoRII CCWGG 1 cut(s) 201
EcoT38I GRGCYC 1 cut(s) 118
FaeI CATG 1 cut(s) 98
FaiI YATR 3 cut(s) 96, 147, 192
FaqI GGGAC 1 cut(s) 122
FatI CATG 1 cut(s) 94
Fnu4HI GCNGC 1 cut(s) 212
FokI GGATG 1 cut(s) 203
FriOI GRGCYC 1 cut(s) 118
Fsp4HI GCNGC 1 cut(s) 212
FspBI CTAG 1 cut(s) 120
GlaI GCGC 2 cut(s) 68, 215
GluI GCNGC 1 cut(s) 212
HaeII RGCGCY 1 cut(s) 70
HaeIII GGCC 1 cut(s) 150
HgaI GACGC 1 cut(s) 274
HhaI GCGC 2 cut(s) 69, 216
Hin1II CATG 1 cut(s) 98
Hin6I GCGC 2 cut(s) 67, 214
HinP1I GCGC 2 cut(s) 67, 214
HinfI GANTC 1 cut(s) 255
Hpy188I TCNGA 1 cut(s) 82
Hpy99I CGWCG 2 cut(s) 290, 308
HpyAV CCTTC 1 cut(s) 382
HpyCH4III ACNGT 1 cut(s) 304
HpyCH4V TGCA 2 cut(s) 30, 360
HpyF10VI GCNNNNNNNGC 1 cut(s) 75
HpyF3I CTNAG 2 cut(s) 222, 249
Hsp92II CATG 1 cut(s) 98
HspAI GCGC 2 cut(s) 67, 214
Kzo9I GATC 1 cut(s) 105
LmnI GCTCC 1 cut(s) 9
LpnPI CCDG 4 cut(s) 187, 188, 215, 234
Lsp1109I GCAGC 1 cut(s) 223
LweI GCATC 1 cut(s) 225
MaeI CTAG 1 cut(s) 120
MaeIII GTNAC 4 cut(s) 197, 244, 256, 266
MalI GATC 1 cut(s) 107
MboI GATC 1 cut(s) 105
MboII GAAGA 1 cut(s) 379
MhlI GDGCHC 1 cut(s) 118
MlsI TGGCCA 1 cut(s) 150
MluCI AATT 1 cut(s) 353
MluNI TGGCCA 1 cut(s) 150
MlyI GAGTC 1 cut(s) 264
MnlI CCTC 5 cut(s) 150, 178, 217, 289, 325
Mox20I TGGCCA 1 cut(s) 150
MroXI GAANNNNTTC 1 cut(s) 371
MscI TGGCCA 1 cut(s) 150
MseI TTAA 2 cut(s) 240, 385
Msp20I TGGCCA 1 cut(s) 150
MspR9I CCNGG 1 cut(s) 203
MvaI CCWGG 1 cut(s) 203
MvnI CGCG 1 cut(s) 285
MwoI GCNNNNNNNGC 1 cut(s) 75
NdeII GATC 1 cut(s) 105
NlaIII CATG 1 cut(s) 98
NlaIV GGNNCC 1 cut(s) 281
NmuCI GTSAC 3 cut(s) 244, 256, 266
PcsI WCGNNNNNNNCGW 1 cut(s) 327
PdmI GAANNNNTTC 1 cut(s) 371
PkrI GCNGC 1 cut(s) 213
PleI GAGTC 1 cut(s) 263
PpsI GAGTC 1 cut(s) 263
Psp6I CCWGG 1 cut(s) 201
PspEI GGTNACC 1 cut(s) 197
PspGI CCWGG 1 cut(s) 201
PspN4I GGNNCC 1 cut(s) 281
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
SaqAI TTAA 2 cut(s) 240, 385
SatI GCNGC 1 cut(s) 212
Sau3AI GATC 1 cut(s) 105
SchI GAGTC 1 cut(s) 264
ScrFI CCNGG 1 cut(s) 203
SduI GDGCHC 1 cut(s) 118
SetI ASST 3 cut(s) 50, 319, 374
SfaNI GCATC 1 cut(s) 225
Sse9I AATT 1 cut(s) 353
SsiI CCGC 2 cut(s) 195, 283
SspMI CTAG 1 cut(s) 120
StyD4I CCNGG 1 cut(s) 201
TaaI ACNGT 1 cut(s) 304
TaqI TCGA 2 cut(s) 306, 330
TasI AATT 1 cut(s) 353
Tru1I TTAA 2 cut(s) 240, 385
Tru9I TTAA 2 cut(s) 240, 385
TscAI CASTG 2 cut(s) 136, 181
TseFI GTSAC 3 cut(s) 244, 256, 266
TseI GCWGC 1 cut(s) 211
Tsp45I GTSAC 3 cut(s) 244, 256, 266
TspDTI ATGAA 1 cut(s) 316
TspRI CASTG 2 cut(s) 136, 181
XmnI GAANNNNTTC 1 cut(s) 371
XspI CTAG 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.