FvH4_5g06420

Manganese-dependent ADP-ribose CDP-alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0012506
Physical Location & Seq
Reverse (-)
3759450 .. 3761803
2354 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g06420.t5

Sequence Viewer

Length: 999 bp
ATGGGCTCAACAAATGGCTTAGCCAGTGCACATGGGAAGCGGCCACTATTTTCTTTTGGGGTGATCTCTGATGTTCAGTATGCTGATATTCCTGATGGCCGATCTTTCCTTGGTGTGCCACGATACTATCGCCATAGCATTGTCATACTGAAAAGAGCAGTTCAAAAATGGAATGAACAGAAGAAGCATAAGTTTGTGATCAACTTTGGGGATATTGTTGATGGCTTTTGCCCAAAGGACCAGTCCTTGGATGCTGTAACAAAAGTTGTCAAGGAATTTGAGAATTTCAGTGGCCCTGTCTATCATATGATTGGTAATCACTGCCTCTATAATCTTCCTCGCATGCAATTACTACCGCTGTTGAAGATTCCAAGTATCGATGGTCGTGCCTACTATGATTTTTCACCAAACCCAGAATTCCGATTTGTTGTGCTGGATGGCTATGATATCAGTGCCATTGGTTGGCCTCAAGATCATCCAAATGCAATTGAGGCTTTGAGGTTTCTACAGGAGAAGAACCCAAATACAGATAAGAACAGCCCAGTTGGACTGGAAGGCCTGAAGAGAAGGTTCCTTATGTTCAATGGGGCAGTTGGAAAAGAACAATTGGAATGGTTAGACGGCATTCTTCAGGAAGCAACAGAGTTGAAACAAAAAGTAGTGGTTTGTTGCCATCTGCCTTTAGATCCTGGGGCATCCTCCAAAGAAGCACTTTTGTGGAATTGCGACGAAGTCATGGGTGTTATACACAGATACAACTGTGTGAAGGTTTGCCTTGCTGGGCACGACCACAAAGGTGGTCACGCAATTGATTCCCATGGAGTACATCACAGAACACTTGAAGCCGCCCTTGAGTGCCCGCCTGGGACAGATGCCTATGGATATATCGATGTTTATGATGATAAGCTTTCCCTTACTGGCACTGACCGGATGGCAAGCACGGACATGCAATTCAATCCTCAATCAGACTTTCGAGAGAAACAGCACCAAAAGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00564 map00230 map00564
Pfam Domains
Protein Families
Metallophos

Protein Analysis

333

Amino Acids

37.4

Weight (kDa)

6.42

Isoelectric Point (pI)

36.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Metallophos PF00149 18 - 265 5.2e-11 Calcineurin-like phosphoesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012506)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24730 AT4G24730
fragaria_vesca FvH4_5g06420 FvH4_5g06420 FvH4_5g06420 FvH4_5g06420 FvH4_5g06420 FvH4_5g06420
malus_domestica MD14G1170200.v1.1
prunus_persica Prupe.5G164400_v2.0.a1
pyrus_communis pycom14g14210
rosa_chinensis RchiOBHm_Chr7g0192361
rosa_laevigata RLG00000004376
rosa_roxburghii Rroxscaffold_3G00263100
rosa_rugosa Rorug07G0000800
rosa_samantha Rh7BG126900 Rh7CG128500 Rh7DG128600
rosa_wichuraiana Rw7G010720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 247, 462
AciI CCGC 4 cut(s) 40, 356, 846, 860
AclWI GGATC 1 cut(s) 680
AcoI YGGCCR 2 cut(s) 41, 97
AcsI RAATTY 3 cut(s) 275, 283, 416
AcuI CTGAAG 2 cut(s) 581, 614
AfaI GTAC 1 cut(s) 825
AfiI CCNNNNNNNGG 2 cut(s) 247, 462
AgsI TTSAA 6 cut(s) 164, 364, 583, 649, 842, 955
AjnI CCWGG 2 cut(s) 688, 862
AleI CACNNNNGTG 2 cut(s) 715, 795
AluBI AGCT 1 cut(s) 907
AluI AGCT 1 cut(s) 907
Alw21I GWGCWC 1 cut(s) 31
Alw44I GTGCAC 1 cut(s) 27
AlwI GGATC 1 cut(s) 680
AoxI GGCC 5 cut(s) 41, 97, 292, 464, 556
ApaLI GTGCAC 1 cut(s) 27
ApoI RAATTY 3 cut(s) 275, 283, 416
ArsI GACNNNNNNTTYG 2 cut(s) 227, 259
AspS9I GGNCC 2 cut(s) 238, 293
AsuHPI GGTGA 2 cut(s) 73, 396
AvaII GGWCC 1 cut(s) 238
BaeGI GKGCMC 3 cut(s) 31, 786, 860
BaeI ACNNNNGTAYC 2 cut(s) 745, 778
BanII GRGCYC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 31
BccI CCATC 6 cut(s) 89, 215, 374, 431, 681, 925
BceAI ACGGC 1 cut(s) 637
BcgI CGANNNNNNTGC 2 cut(s) 368, 402
BciT130I CCWGG 2 cut(s) 690, 864
BclI TGATCA 1 cut(s) 198
BfmI CTRYAG 1 cut(s) 506
BisI GCNGC 2 cut(s) 41, 846
BlpI GCTNAGC 1 cut(s) 19
BlsI GCNGC 2 cut(s) 42, 847
Bme1390I CCNGG 2 cut(s) 690, 864
Bme18I GGWCC 1 cut(s) 238
BmgT120I GGNCC 2 cut(s) 238, 293
BmiI GGNNCC 1 cut(s) 572
BmrFI CCNGG 2 cut(s) 690, 864
BmrI ACTGGG 1 cut(s) 536
BmsI GCATC 3 cut(s) 241, 704, 862
BmuI ACTGGG 1 cut(s) 536
Bpu1102I GCTNAGC 1 cut(s) 19
BpuEI CTTGAG 2 cut(s) 453, 872
Bsa29I ATCGAT 2 cut(s) 378, 888
BsaJI CCNNGG 5 cut(s) 109, 246, 689, 817, 863
BsaWI WCCGGW 1 cut(s) 927
Bsc4I CCNNNNNNNGG 2 cut(s) 247, 462
Bse1I ACTGG 5 cut(s) 24, 241, 542, 555, 922
BseBI CCWGG 2 cut(s) 690, 864
BseCI ATCGAT 2 cut(s) 378, 888
BseDI CCNNGG 5 cut(s) 109, 246, 689, 817, 863
BseGI GGATG 5 cut(s) 256, 442, 475, 695, 936
BseLI CCNNNNNNNGG 2 cut(s) 247, 462
BseNI ACTGG 5 cut(s) 24, 241, 542, 555, 922
BseSI GKGCMC 3 cut(s) 31, 786, 860
BseYI CCCAGC 1 cut(s) 779
BshFI GGCC 5 cut(s) 43, 99, 294, 466, 558
BshVI ATCGAT 2 cut(s) 378, 888
BsiHKAI GWGCWC 1 cut(s) 31
BsiSI CCGG 1 cut(s) 928
BslFI GGGAC 1 cut(s) 880
BslI CCNNNNNNNGG 2 cut(s) 247, 462
BsmFI GGGAC 1 cut(s) 880
BsmI GAATGC 1 cut(s) 624
BsnI GGCC 5 cut(s) 43, 99, 294, 466, 558
Bsp1286I GDGCHC 4 cut(s) 8, 31, 786, 860
Bsp143I GATC 5 cut(s) 63, 101, 198, 472, 685
Bsp1720I GCTNAGC 1 cut(s) 19
Bsp19I CCATGG 1 cut(s) 817
BspACI CCGC 4 cut(s) 40, 356, 846, 860
BspANI GGCC 5 cut(s) 43, 99, 294, 466, 558
BspDI ATCGAT 2 cut(s) 378, 888
BspLI GGNNCC 1 cut(s) 572
BspPI GGATC 1 cut(s) 680
BsrI ACTGG 5 cut(s) 24, 241, 542, 555, 922
BssECI CCNNGG 5 cut(s) 109, 246, 689, 817, 863
BssMI GATC 5 cut(s) 63, 101, 198, 472, 685
BssT1I CCWWGG 3 cut(s) 109, 246, 817
Bst2UI CCWGG 2 cut(s) 690, 864
Bst4CI ACNGT 1 cut(s) 761
Bst6I CTCTTC 1 cut(s) 557
BstC8I GCNNGC 3 cut(s) 344, 860, 937
BstDEI CTNAG 1 cut(s) 19
BstDSI CCRYGG 1 cut(s) 817
BstF5I GGATG 5 cut(s) 256, 442, 475, 695, 936
BstKTI GATC 5 cut(s) 66, 104, 201, 475, 688
BstMBI GATC 5 cut(s) 63, 101, 198, 472, 685
BstMWI GCNNNNNNNGC 1 cut(s) 491
BstNI CCWGG 2 cut(s) 690, 864
BstNSI RCATGY 2 cut(s) 346, 949
BstSCI CCNGG 2 cut(s) 688, 862
BstSFI CTRYAG 1 cut(s) 506
BstSLI GKGCMC 3 cut(s) 31, 786, 860
BstX2I RGATCY 1 cut(s) 685
BstXI CCANNNNNNTGG 1 cut(s) 797
BstYI RGATCY 1 cut(s) 685
Bsu15I ATCGAT 2 cut(s) 378, 888
BsuRI GGCC 5 cut(s) 43, 99, 294, 466, 558
BsuTUI ATCGAT 2 cut(s) 378, 888
BtgI CCRYGG 1 cut(s) 817
BtsCI GGATG 5 cut(s) 256, 442, 475, 695, 936
BtsI GCAGTG 1 cut(s) 319
BtsIMutI CAGTG 5 cut(s) 31, 295, 319, 457, 921
Cac8I GCNNGC 3 cut(s) 344, 860, 937
Cfr13I GGNCC 2 cut(s) 238, 293
ClaI ATCGAT 2 cut(s) 378, 888
Csp6I GTAC 1 cut(s) 824
CviAII CATG 5 cut(s) 32, 343, 736, 818, 946
CviQI GTAC 1 cut(s) 824
DdeI CTNAG 1 cut(s) 19
DpnI GATC 5 cut(s) 65, 103, 200, 474, 687
DpnII GATC 5 cut(s) 63, 101, 198, 472, 685
EaeI YGGCCR 2 cut(s) 41, 97
Eam1104I CTCTTC 1 cut(s) 557
EarI CTCTTC 1 cut(s) 557
Eco130I CCWWGG 3 cut(s) 109, 246, 817
Eco147I AGGCCT 1 cut(s) 558
Eco24I GRGCYC 1 cut(s) 8
Eco32I GATATC 1 cut(s) 448
Eco47I GGWCC 1 cut(s) 238
Eco57I CTGAAG 2 cut(s) 581, 614
EcoRI GAATTC 1 cut(s) 416
EcoRII CCWGG 2 cut(s) 688, 862
EcoRV GATATC 1 cut(s) 448
EcoT14I CCWWGG 3 cut(s) 109, 246, 817
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 3 cut(s) 109, 246, 817
FaeI CATG 5 cut(s) 35, 346, 739, 821, 949
FalI AAGNNNNNCTT 4 cut(s) 696, 728, 834, 866
FaqI GGGAC 1 cut(s) 880
FatI CATG 5 cut(s) 31, 342, 735, 817, 945
FauI CCCGC 1 cut(s) 867
FauNDI CATATG 1 cut(s) 306
FbaI TGATCA 1 cut(s) 198
Fnu4HI GCNGC 2 cut(s) 41, 846
FokI GGATG 5 cut(s) 263, 449, 462, 682, 943
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 2 cut(s) 41, 846
GluI GCNGC 2 cut(s) 41, 846
GsaI CCCAGC 1 cut(s) 783
HaeIII GGCC 5 cut(s) 43, 99, 294, 466, 558
HapII CCGG 1 cut(s) 928
Hin1II CATG 5 cut(s) 35, 346, 739, 821, 949
HindIII AAGCTT 1 cut(s) 905
HinfI GANTC 2 cut(s) 367, 812
HpaII CCGG 1 cut(s) 928
HphI GGTGA 2 cut(s) 73, 396
Hpy166II GTNNAC 1 cut(s) 29
Hpy188I TCNGA 3 cut(s) 70, 422, 967
Hpy188III TCNNGA 4 cut(s) 92, 470, 632, 974
Hpy8I GTNNAC 1 cut(s) 29
Hpy99I CGWCG 1 cut(s) 731
HpyAV CCTTC 3 cut(s) 548, 561, 760
HpyCH4III ACNGT 1 cut(s) 761
HpyCH4V TGCA 4 cut(s) 29, 346, 485, 949
HpyF10VI GCNNNNNNNGC 1 cut(s) 491
HpyF3I CTNAG 1 cut(s) 19
Hsp92II CATG 5 cut(s) 35, 346, 739, 821, 949
Ksp22I TGATCA 1 cut(s) 198
Kzo9I GATC 5 cut(s) 63, 101, 198, 472, 685
LweI GCATC 3 cut(s) 241, 704, 862
MaeIII GTNAC 2 cut(s) 256, 800
MalI GATC 5 cut(s) 65, 103, 200, 474, 687
MboI GATC 5 cut(s) 63, 101, 198, 472, 685
MboII GAAGA 6 cut(s) 193, 326, 376, 526, 574, 620
MfeI CAATTG 3 cut(s) 486, 605, 807
MflI RGATCY 1 cut(s) 685
MhlI GDGCHC 4 cut(s) 8, 31, 786, 860
MluCI AATT 9 cut(s) 275, 283, 347, 416, 486, 605, 721, 807, 950
MmeI TCCRAC 2 cut(s) 526, 574
MnlI CCTC 7 cut(s) 335, 348, 477, 484, 492, 709, 969
MslI CAYNNNNRTG 4 cut(s) 480, 715, 795, 944
MspA1I CMGCKG 1 cut(s) 358
MspI CCGG 1 cut(s) 928
MspR9I CCNGG 2 cut(s) 690, 864
MunI CAATTG 3 cut(s) 486, 605, 807
Mva1269I GAATGC 1 cut(s) 624
MvaI CCWGG 2 cut(s) 690, 864
MwoI GCNNNNNNNGC 1 cut(s) 491
NcoI CCATGG 1 cut(s) 817
NdeI CATATG 1 cut(s) 306
NdeII GATC 5 cut(s) 63, 101, 198, 472, 685
NlaIII CATG 5 cut(s) 35, 346, 739, 821, 949
NlaIV GGNNCC 1 cut(s) 572
NmuCI GTSAC 1 cut(s) 800
NspI RCATGY 2 cut(s) 346, 949
OliI CACNNNNGTG 2 cut(s) 715, 795
PaeI GCATGC 1 cut(s) 346
PceI AGGCCT 1 cut(s) 558
PctI GAATGC 1 cut(s) 624
PfeI GAWTC 2 cut(s) 367, 812
PflFI GACNNNGTC 1 cut(s) 731
PflMI CCANNNNNTGG 2 cut(s) 247, 462
PkrI GCNGC 2 cut(s) 42, 847
Psp6I CCWGG 2 cut(s) 688, 862
PspFI CCCAGC 1 cut(s) 779
PspGI CCWGG 2 cut(s) 688, 862
PspN4I GGNNCC 1 cut(s) 572
PspPI GGNCC 2 cut(s) 238, 293
PsuI RGATCY 1 cut(s) 685
PsyI GACNNNGTC 1 cut(s) 731
RsaI GTAC 1 cut(s) 825
RsaNI GTAC 1 cut(s) 824
RseI CAYNNNNRTG 4 cut(s) 480, 715, 795, 944
SatI GCNGC 2 cut(s) 41, 846
Sau3AI GATC 5 cut(s) 63, 101, 198, 472, 685
Sau96I GGNCC 2 cut(s) 238, 293
ScrFI CCNGG 2 cut(s) 690, 864
SduI GDGCHC 4 cut(s) 8, 31, 786, 860
SetI ASST 5 cut(s) 503, 572, 771, 799, 909
SfaNI GCATC 3 cut(s) 241, 704, 862
SfcI CTRYAG 1 cut(s) 506
SinI GGWCC 1 cut(s) 238
SmiMI CAYNNNNRTG 4 cut(s) 480, 715, 795, 944
SmlI CTYRAG 2 cut(s) 468, 851
SmoI CTYRAG 2 cut(s) 468, 851
SphI GCATGC 1 cut(s) 346
Sse9I AATT 9 cut(s) 275, 283, 347, 416, 486, 605, 721, 807, 950
SseBI AGGCCT 1 cut(s) 558
SsiI CCGC 4 cut(s) 40, 356, 846, 860
StuI AGGCCT 1 cut(s) 558
StyD4I CCNGG 2 cut(s) 688, 862
StyI CCWWGG 3 cut(s) 109, 246, 817
TaaI ACNGT 1 cut(s) 761
TaqI TCGA 3 cut(s) 378, 888, 973
TasI AATT 9 cut(s) 275, 283, 347, 416, 486, 605, 721, 807, 950
TatI WGTACW 1 cut(s) 823
TauI GCSGC 2 cut(s) 43, 848
TfiI GAWTC 2 cut(s) 367, 812
TscAI CASTG 5 cut(s) 31, 295, 326, 457, 928
TseFI GTSAC 1 cut(s) 800
Tsp45I GTSAC 1 cut(s) 800
TspDTI ATGAA 1 cut(s) 189
TspGWI ACGGA 1 cut(s) 956
TspRI CASTG 5 cut(s) 31, 295, 326, 457, 928
Tth111I GACNNNGTC 1 cut(s) 731
Van91I CCANNNNNTGG 2 cut(s) 247, 462
VneI GTGCAC 1 cut(s) 27
VpaK11BI GGWCC 1 cut(s) 238
XapI RAATTY 3 cut(s) 275, 283, 416
XceI RCATGY 2 cut(s) 346, 949
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.