RLG00000004376

Manganese-dependent ADP-ribose CDP-alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0012506
Physical Location & Seq
Reverse (-)
58861397 .. 58862611
1215 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004376

Sequence Viewer

Length: 1131 bp
ATGGGCTCAACAAATGGCTTAGCCAGTGCACATGGGAAGCAACCTCTATTTTCTTTTGGGGTAATCTCCGATGTCCAGTATGCTGATATTCCTGATGGCCGATCTTTCCTTGGTGTTCCACGATATTATCGCCATAGCATTTTTGTATTGAAAAGAGCAGTTCAAAAATGGAATGATCAGAAAAAGCATGAATTTGTGATCAACTTTGGGGATATTGTTGATGGTTTTTGCCCAAAGGATCAGTCACTCAATGCTGTAACAAATGTTGTGGAGGAATTTGAGAATTTCAATGGCCCCGTCTATCATATGATTGGTAATCACTGCCTCTACAATCTTCCCCGCAAGCAACTACTACCACTATTAAAGATTCCGAGTATCGATGGTCGTGCCTACTATGACTTTTCACCGACCCCAGAATTCAGATTTGTTGTTCTGGATGCCTATGATGTCAGTGCCATTGGTTGGCCTCAAGATCACCCAAGTGCAATTGAGGCTTTGAGGTTTCTACAGGAGAAGAATCCAAATGCAGACAAGAACAGCCCGGCTGGACTGGAAGGCCTTGAGAGAAGGTTCCTTATGTTCAATGGAGCAGTTGGAAAACAACAATTGGAATGGTTAGACAGCATTCTTCAGGAAGCAACAGAGTTGAAACAAAAAGTAGTGGTTGGTTGCCATCTGCCTTTAGATCCTGGGGCGTCATCCAAAGAAGCACTTTTGTGGAATTACGACGAAGTCATGGGTGTTATTCACAGATACAATTGTGTGAAGGTTTGCCTTGCTGGGCATGACCACAAAGGTGGTCACTCAATTGATTCCCGTGGAGTACATCACAGAGTTCTTGAAGCTGCCCTTGAGTGCCCACCTGGGACAGATGCCTATGGATATATAGATGTTTATGATGATAAGCTATTGCTTACTGGTACTGACCGGATGGCAAGCACTGACATGCAATTCAATCCTCAATCAGACTTTCGAGAAAAACAGCATCAAAGGCCTCAAAAGCCTCCGTCCCCTGCACATATTTGGGATTGTAGAAAAGCTATTCATGTTTCTGTAGTCCCATTGGAACGCCCCACAGAGAATTCTATGCCGGTCTGTTTTCTTGACACCACTGTACACAAGCATTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00564 map00230 map00564
Pfam Domains
Protein Families
Metallophos

Protein Analysis

377

Amino Acids

42.42

Weight (kDa)

6.21

Isoelectric Point (pI)

43.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Metallophos PF00149 18 - 265 7.2e-11 Calcineurin-like phosphoesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012506)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24730 AT4G24730
fragaria_vesca FvH4_5g06420 FvH4_5g06420 FvH4_5g06420 FvH4_5g06420 FvH4_5g06420 FvH4_5g06420
malus_domestica MD14G1170200.v1.1
prunus_persica Prupe.5G164400_v2.0.a1
pyrus_communis pycom14g14210
rosa_chinensis RchiOBHm_Chr7g0192361
rosa_laevigata RLG00000004376
rosa_roxburghii Rroxscaffold_3G00263100
rosa_rugosa Rorug07G0000800
rosa_samantha Rh7BG126900 Rh7CG128500 Rh7DG128600
rosa_wichuraiana Rw7G010720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 462
AciI CCGC 1 cut(s) 340
AclWI GGATC 2 cut(s) 246, 680
AcoI YGGCCR 1 cut(s) 97
AcsI RAATTY 5 cut(s) 191, 275, 283, 416, 1081
AcuI CTGAAG 1 cut(s) 614
AcyI GRCGYC 1 cut(s) 695
AfaI GTAC 3 cut(s) 825, 922, 1116
AfiI CCNNNNNNNGG 1 cut(s) 462
AgsI TTSAA 7 cut(s) 151, 164, 289, 583, 649, 842, 955
AjnI CCWGG 2 cut(s) 688, 862
AleI CACNNNNGTG 3 cut(s) 480, 715, 795
AluBI AGCT 3 cut(s) 845, 907, 1040
AluI AGCT 3 cut(s) 845, 907, 1040
Alw21I GWGCWC 1 cut(s) 31
Alw44I GTGCAC 1 cut(s) 27
AlwI GGATC 2 cut(s) 246, 680
AoxI GGCC 5 cut(s) 97, 292, 464, 556, 992
ApaLI GTGCAC 1 cut(s) 27
ApeKI GCWGC 1 cut(s) 845
ApoI RAATTY 5 cut(s) 191, 275, 283, 416, 1081
ArsI GACNNNNNNTTYG 2 cut(s) 227, 259
AspS9I GGNCC 1 cut(s) 293
AsuC2I CCSGG 1 cut(s) 542
AsuHPI GGTGA 2 cut(s) 396, 467
BaeGI GKGCMC 2 cut(s) 31, 860
BaeI ACNNNNGTAYC 2 cut(s) 745, 778
BanII GRGCYC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 31
BbvI GCAGC 1 cut(s) 832
BccI CCATC 5 cut(s) 89, 215, 374, 681, 925
BcgI CGANNNNNNTGC 2 cut(s) 368, 402
BciT130I CCWGG 2 cut(s) 690, 864
BclI TGATCA 2 cut(s) 175, 198
BcnI CCSGG 1 cut(s) 542
BfmI CTRYAG 2 cut(s) 506, 1053
BisI GCNGC 1 cut(s) 846
BlpI GCTNAGC 1 cut(s) 19
BlsI GCNGC 1 cut(s) 847
Bme1390I CCNGG 3 cut(s) 542, 690, 864
BmgT120I GGNCC 1 cut(s) 293
BmiI GGNNCC 2 cut(s) 295, 572
BmrFI CCNGG 3 cut(s) 542, 690, 864
BmsI GCATC 3 cut(s) 427, 862, 994
Bpu1102I GCTNAGC 1 cut(s) 19
BpuEI CTTGAG 3 cut(s) 453, 581, 872
BpuMI CCSGG 1 cut(s) 542
Bsa29I ATCGAT 1 cut(s) 378
BsaHI GRCGYC 1 cut(s) 695
BsaJI CCNNGG 4 cut(s) 109, 689, 817, 863
BsaWI WCCGGW 1 cut(s) 927
Bsc4I CCNNNNNNNGG 1 cut(s) 462
Bse118I RCCGGY 1 cut(s) 1090
Bse1I ACTGG 4 cut(s) 24, 76, 555, 922
BseBI CCWGG 2 cut(s) 690, 864
BseCI ATCGAT 1 cut(s) 378
BseDI CCNNGG 4 cut(s) 109, 689, 817, 863
BseGI GGATG 3 cut(s) 442, 698, 936
BseLI CCNNNNNNNGG 1 cut(s) 462
BseNI ACTGG 4 cut(s) 24, 76, 555, 922
BseSI GKGCMC 2 cut(s) 31, 860
BseXI GCAGC 1 cut(s) 832
BseYI CCCAGC 1 cut(s) 779
BsgI GTGCAG 1 cut(s) 999
BshFI GGCC 5 cut(s) 99, 294, 466, 558, 994
BshVI ATCGAT 1 cut(s) 378
BsiHKAI GWGCWC 1 cut(s) 31
BsiSI CCGG 3 cut(s) 542, 928, 1091
BslFI GGGAC 3 cut(s) 880, 994, 1043
BslI CCNNNNNNNGG 1 cut(s) 462
BsmFI GGGAC 3 cut(s) 880, 994, 1043
BsmI GAATGC 1 cut(s) 624
BsnI GGCC 5 cut(s) 99, 294, 466, 558, 994
Bsp1286I GDGCHC 3 cut(s) 8, 31, 860
Bsp1407I TGTACA 1 cut(s) 1114
Bsp143I GATC 6 cut(s) 101, 175, 198, 238, 472, 685
Bsp1720I GCTNAGC 1 cut(s) 19
BspACI CCGC 1 cut(s) 340
BspANI GGCC 5 cut(s) 99, 294, 466, 558, 994
BspDI ATCGAT 1 cut(s) 378
BspLI GGNNCC 2 cut(s) 295, 572
BspPI GGATC 2 cut(s) 246, 680
BsrFI RCCGGY 1 cut(s) 1090
BsrGI TGTACA 1 cut(s) 1114
BsrI ACTGG 4 cut(s) 24, 76, 555, 922
BssAI RCCGGY 1 cut(s) 1090
BssECI CCNNGG 4 cut(s) 109, 689, 817, 863
BssMI GATC 6 cut(s) 101, 175, 198, 238, 472, 685
BssNI GRCGYC 1 cut(s) 695
BssT1I CCWWGG 1 cut(s) 109
Bst2UI CCWGG 2 cut(s) 690, 864
Bst4CI ACNGT 1 cut(s) 1114
BstACI GRCGYC 1 cut(s) 695
BstAUI TGTACA 1 cut(s) 1114
BstC8I GCNNGC 2 cut(s) 344, 937
BstDEI CTNAG 1 cut(s) 19
BstDSI CCRYGG 1 cut(s) 817
BstF5I GGATG 3 cut(s) 442, 698, 936
BstKTI GATC 6 cut(s) 104, 178, 201, 241, 475, 688
BstMBI GATC 6 cut(s) 101, 175, 198, 238, 472, 685
BstMWI GCNNNNNNNGC 3 cut(s) 491, 991, 1000
BstNI CCWGG 2 cut(s) 690, 864
BstNSI RCATGY 1 cut(s) 949
BstSCI CCNGG 3 cut(s) 540, 688, 862
BstSFI CTRYAG 2 cut(s) 506, 1053
BstSLI GKGCMC 2 cut(s) 31, 860
BstV1I GCAGC 1 cut(s) 832
BstX2I RGATCY 1 cut(s) 685
BstXI CCANNNNNNTGG 1 cut(s) 797
BstYI RGATCY 1 cut(s) 685
Bsu15I ATCGAT 1 cut(s) 378
BsuRI GGCC 5 cut(s) 99, 294, 466, 558, 994
BsuTUI ATCGAT 1 cut(s) 378
BtgI CCRYGG 1 cut(s) 817
BtsCI GGATG 3 cut(s) 442, 698, 936
BtsI GCAGTG 1 cut(s) 319
BtsIMutI CAGTG 5 cut(s) 31, 319, 457, 939, 1110
Cac8I GCNNGC 2 cut(s) 344, 937
Cfr10I RCCGGY 1 cut(s) 1090
Cfr13I GGNCC 1 cut(s) 293
ClaI ATCGAT 1 cut(s) 378
CseI GACGC 1 cut(s) 684
Csp6I GTAC 3 cut(s) 824, 921, 1115
CspCI CAANNNNNGTGG 2 cut(s) 249, 284
CviAII CATG 6 cut(s) 32, 188, 736, 785, 946, 1046
CviQI GTAC 3 cut(s) 824, 921, 1115
DdeI CTNAG 1 cut(s) 19
DpnI GATC 6 cut(s) 103, 177, 200, 240, 474, 687
DpnII GATC 6 cut(s) 101, 175, 198, 238, 472, 685
EaeI YGGCCR 1 cut(s) 97
Eco130I CCWWGG 1 cut(s) 109
Eco147I AGGCCT 2 cut(s) 558, 994
Eco24I GRGCYC 1 cut(s) 8
Eco57I CTGAAG 1 cut(s) 614
EcoRI GAATTC 2 cut(s) 416, 1081
EcoRII CCWGG 2 cut(s) 688, 862
EcoT14I CCWWGG 1 cut(s) 109
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 1 cut(s) 109
FaeI CATG 6 cut(s) 35, 191, 739, 788, 949, 1049
FalI AAGNNNNNCTT 4 cut(s) 696, 728, 834, 866
FaqI GGGAC 3 cut(s) 880, 994, 1043
FatI CATG 6 cut(s) 31, 187, 735, 784, 945, 1045
FauI CCCGC 1 cut(s) 347
FauNDI CATATG 1 cut(s) 306
FbaI TGATCA 2 cut(s) 175, 198
Fnu4HI GCNGC 1 cut(s) 846
FokI GGATG 3 cut(s) 449, 685, 943
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 1 cut(s) 846
GluI GCNGC 1 cut(s) 846
GsaI CCCAGC 1 cut(s) 783
HaeIII GGCC 5 cut(s) 99, 294, 466, 558, 994
HapII CCGG 3 cut(s) 542, 928, 1091
HgaI GACGC 1 cut(s) 684
Hin1I GRCGYC 1 cut(s) 695
Hin1II CATG 6 cut(s) 35, 191, 739, 788, 949, 1049
HinfI GANTC 3 cut(s) 367, 517, 812
HpaII CCGG 3 cut(s) 542, 928, 1091
HphI GGTGA 2 cut(s) 396, 467
Hpy166II GTNNAC 2 cut(s) 29, 1117
Hpy188I TCNGA 5 cut(s) 70, 180, 372, 422, 967
Hpy188III TCNNGA 7 cut(s) 92, 434, 470, 632, 839, 974, 1103
Hpy8I GTNNAC 2 cut(s) 29, 1117
Hpy99I CGWCG 1 cut(s) 731
HpyAV CCTTC 3 cut(s) 548, 561, 760
HpyCH4III ACNGT 1 cut(s) 1114
HpyCH4V TGCA 5 cut(s) 29, 485, 527, 949, 1016
HpyF10VI GCNNNNNNNGC 3 cut(s) 491, 991, 1000
HpyF3I CTNAG 1 cut(s) 19
Hsp92I GRCGYC 1 cut(s) 695
Hsp92II CATG 6 cut(s) 35, 191, 739, 788, 949, 1049
Ksp22I TGATCA 2 cut(s) 175, 198
Kzo9I GATC 6 cut(s) 101, 175, 198, 238, 472, 685
LmnI GCTCC 1 cut(s) 587
Lsp1109I GCAGC 1 cut(s) 832
LweI GCATC 3 cut(s) 427, 862, 994
MaeIII GTNAC 3 cut(s) 243, 256, 800
MalI GATC 6 cut(s) 103, 177, 200, 240, 474, 687
MboI GATC 6 cut(s) 101, 175, 198, 238, 472, 685
MboII GAAGA 3 cut(s) 326, 526, 620
MfeI CAATTG 4 cut(s) 486, 605, 757, 807
MflI RGATCY 1 cut(s) 685
MhlI GDGCHC 3 cut(s) 8, 31, 860
MmeI TCCRAC 1 cut(s) 574
MnlI CCTC 9 cut(s) 54, 265, 335, 477, 484, 492, 969, 1005, 1014
MseI TTAA 1 cut(s) 362
MslI CAYNNNNRTG 4 cut(s) 480, 715, 795, 944
MspI CCGG 3 cut(s) 542, 928, 1091
MspR9I CCNGG 3 cut(s) 542, 690, 864
MunI CAATTG 4 cut(s) 486, 605, 757, 807
Mva1269I GAATGC 1 cut(s) 624
MvaI CCWGG 2 cut(s) 690, 864
MwoI GCNNNNNNNGC 3 cut(s) 491, 991, 1000
NciI CCSGG 1 cut(s) 542
NdeI CATATG 1 cut(s) 306
NdeII GATC 6 cut(s) 101, 175, 198, 238, 472, 685
NlaIII CATG 6 cut(s) 35, 191, 739, 788, 949, 1049
NlaIV GGNNCC 2 cut(s) 295, 572
NmuCI GTSAC 2 cut(s) 243, 800
NspI RCATGY 1 cut(s) 949
OliI CACNNNNGTG 3 cut(s) 480, 715, 795
PceI AGGCCT 2 cut(s) 558, 994
PctI GAATGC 1 cut(s) 624
PfeI GAWTC 3 cut(s) 367, 517, 812
PflFI GACNNNGTC 1 cut(s) 731
PflMI CCANNNNNTGG 1 cut(s) 462
PkrI GCNGC 1 cut(s) 847
Psp6I CCWGG 2 cut(s) 688, 862
PspFI CCCAGC 1 cut(s) 779
PspGI CCWGG 2 cut(s) 688, 862
PspN4I GGNNCC 2 cut(s) 295, 572
PspPI GGNCC 1 cut(s) 293
PsuI RGATCY 1 cut(s) 685
PsyI GACNNNGTC 1 cut(s) 731
RsaI GTAC 3 cut(s) 825, 922, 1116
RsaNI GTAC 3 cut(s) 824, 921, 1115
RseI CAYNNNNRTG 4 cut(s) 480, 715, 795, 944
SaqAI TTAA 1 cut(s) 362
SatI GCNGC 1 cut(s) 846
Sau3AI GATC 6 cut(s) 101, 175, 198, 238, 472, 685
Sau96I GGNCC 1 cut(s) 293
ScrFI CCNGG 3 cut(s) 542, 690, 864
SduI GDGCHC 3 cut(s) 8, 31, 860
SetI ASST 9 cut(s) 46, 503, 572, 771, 799, 847, 865, 909, 1042
SfaNI GCATC 3 cut(s) 427, 862, 994
SfcI CTRYAG 2 cut(s) 506, 1053
SmiMI CAYNNNNRTG 4 cut(s) 480, 715, 795, 944
SmlI CTYRAG 3 cut(s) 468, 560, 851
SmoI CTYRAG 3 cut(s) 468, 560, 851
SseBI AGGCCT 2 cut(s) 558, 994
SsiI CCGC 1 cut(s) 340
StuI AGGCCT 2 cut(s) 558, 994
StyD4I CCNGG 3 cut(s) 540, 688, 862
StyI CCWWGG 1 cut(s) 109
TaaI ACNGT 1 cut(s) 1114
TaqI TCGA 2 cut(s) 378, 973
TatI WGTACW 2 cut(s) 823, 1114
TfiI GAWTC 3 cut(s) 367, 517, 812
Tru1I TTAA 1 cut(s) 362
Tru9I TTAA 1 cut(s) 362
TscAI CASTG 5 cut(s) 31, 326, 457, 946, 1117
TseFI GTSAC 2 cut(s) 243, 800
TseI GCWGC 1 cut(s) 845
Tsp45I GTSAC 2 cut(s) 243, 800
TspDTI ATGAA 2 cut(s) 204, 1034
TspGWI ACGGA 1 cut(s) 996
TspRI CASTG 5 cut(s) 31, 326, 457, 946, 1117
Tth111I GACNNNGTC 1 cut(s) 731
Van91I CCANNNNNTGG 1 cut(s) 462
VneI GTGCAC 1 cut(s) 27
XapI RAATTY 5 cut(s) 191, 275, 283, 416, 1081
XceI RCATGY 1 cut(s) 949
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.