Rroxscaffold_3G00263100

Manganese-dependent ADP-ribose CDP-alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0012506
Physical Location & Seq
Reverse (-)
57030235 .. 57032765
2531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00263100.1

Sequence Viewer

Length: 999 bp
ATGTGCTCAACAAATGGCTTAGCCAGTGCACATGGGAAGCAACCTCTATTTTCTTTTGGGGTAATCTCCGATGTCCAGTATGCTGATATTCCTGATGGCCGATCTTTCCTTGGTGTTCCACGATATTATCGCCATAGCATTTTTGTATTGAAAAGAGCAGTTCAAAAATGGAATGATCAGAAGAAGCATAAATTTGTGATCAACTTTGGGGATATTGTTGATGGTTTTTGCCCAAAGGATCAGTCACTCAATGCTGTAACGAATGTTGTGGAGGAATTTGAGAATTTCAATGGCCCCGTCTATCATATGATTGGTAATCACTGCCTCTACAATCTTCCCCGCAAGCAATTACTACCCCTATTAAAGATTCTGAGTATCGATGGTCGGGCCTACTATGACTTTTCACCAACCCCAGAATTCAGATTTGTTGTTCTGGATGCCTATGATATCAGTGCCATTGGTTGGCCTCAAGATCATCCAAGTGCAATTGAGGCTTTGAGGTTTCTACAGGAGAAGAATCCAAATACAGACAAGAACAGCCCGGCTGGACTGGAAGGCGTTGAGAGAAGGTTCCTTTTGTTCAATGGAGCAGTTGGAAAAGAACAATTGGAATGGTTAGACAGCATTCTTCAGGAAGCAACAGAGTTGAAACAGAAAGTAGTGGTTGGTTGCCATCTGCCTTTAGATCCTGGGGCGTCATCCAGAGAAGCACTTTTGTGGAATTACGACGAAGTCATGGGTGTTATTCACAGATACAATTGCGTGAAGGTTTGCCTTGCTGGGCATGACCACAAAGGTGGTCACTCAATTGATTCCCGTGGAGTACATCACAGAGTTCTTGAAGCTGCCCTTGAGTGCCCACCTGGGACAGATGCCTATGGATATATAGATGTTTATGATGATAAGCTATCGCTTACTGGTACTGACCGGATGGCAAGCACTGACATGCAATTCAATCCTCAATCAGACTTTCGAGAAAAACAGCATCAAAGGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00564 map00230 map00564
Pfam Domains
Protein Families
Metallophos

Protein Analysis

332

Amino Acids

37.51

Weight (kDa)

6.05

Isoelectric Point (pI)

39.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Metallophos PF00149 18 - 265 6.9e-11 Calcineurin-like phosphoesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012506)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24730 AT4G24730
fragaria_vesca FvH4_5g06420 FvH4_5g06420 FvH4_5g06420 FvH4_5g06420 FvH4_5g06420 FvH4_5g06420
malus_domestica MD14G1170200.v1.1
prunus_persica Prupe.5G164400_v2.0.a1
pyrus_communis pycom14g14210
rosa_chinensis RchiOBHm_Chr7g0192361
rosa_laevigata RLG00000004376
rosa_roxburghii Rroxscaffold_3G00263100
rosa_rugosa Rorug07G0000800
rosa_samantha Rh7BG126900 Rh7CG128500 Rh7DG128600
rosa_wichuraiana Rw7G010720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 462
AciI CCGC 1 cut(s) 340
AclWI GGATC 2 cut(s) 246, 680
AcoI YGGCCR 1 cut(s) 97
AcsI RAATTY 4 cut(s) 191, 275, 283, 416
AcuI CTGAAG 1 cut(s) 614
AcyI GRCGYC 1 cut(s) 695
AfaI GTAC 2 cut(s) 825, 922
AfiI CCNNNNNNNGG 1 cut(s) 462
AgsI TTSAA 7 cut(s) 151, 164, 289, 583, 649, 842, 955
AjnI CCWGG 2 cut(s) 688, 862
AleI CACNNNNGTG 2 cut(s) 715, 795
AluBI AGCT 2 cut(s) 845, 907
AluI AGCT 2 cut(s) 845, 907
Alw21I GWGCWC 2 cut(s) 8, 31
Alw44I GTGCAC 1 cut(s) 27
AlwI GGATC 2 cut(s) 246, 680
AoxI GGCC 4 cut(s) 97, 292, 387, 464
ApaLI GTGCAC 1 cut(s) 27
ApeKI GCWGC 1 cut(s) 845
ApoI RAATTY 4 cut(s) 191, 275, 283, 416
ArsI GACNNNNNNTTYG 2 cut(s) 227, 259
AspS9I GGNCC 2 cut(s) 293, 387
AsuC2I CCSGG 1 cut(s) 542
AsuHPI GGTGA 1 cut(s) 396
BaeGI GKGCMC 2 cut(s) 31, 860
Bbv12I GWGCWC 2 cut(s) 8, 31
BbvI GCAGC 1 cut(s) 832
BccI CCATC 5 cut(s) 89, 215, 374, 681, 925
BciT130I CCWGG 2 cut(s) 690, 864
BclI TGATCA 2 cut(s) 175, 198
BcnI CCSGG 1 cut(s) 542
BfmI CTRYAG 1 cut(s) 506
BisI GCNGC 1 cut(s) 846
BlpI GCTNAGC 1 cut(s) 19
BlsI GCNGC 1 cut(s) 847
Bme1390I CCNGG 3 cut(s) 542, 690, 864
BmgT120I GGNCC 2 cut(s) 293, 387
BmiI GGNNCC 2 cut(s) 295, 572
BmrFI CCNGG 3 cut(s) 542, 690, 864
BmsI GCATC 3 cut(s) 427, 862, 994
Bpu1102I GCTNAGC 1 cut(s) 19
BpuEI CTTGAG 2 cut(s) 453, 872
BpuMI CCSGG 1 cut(s) 542
Bsa29I ATCGAT 1 cut(s) 378
BsaHI GRCGYC 1 cut(s) 695
BsaJI CCNNGG 4 cut(s) 109, 689, 817, 863
BsaWI WCCGGW 1 cut(s) 927
Bsc4I CCNNNNNNNGG 1 cut(s) 462
Bse1I ACTGG 4 cut(s) 24, 76, 555, 922
BseBI CCWGG 2 cut(s) 690, 864
BseCI ATCGAT 1 cut(s) 378
BseDI CCNNGG 4 cut(s) 109, 689, 817, 863
BseGI GGATG 4 cut(s) 442, 475, 698, 936
BseLI CCNNNNNNNGG 1 cut(s) 462
BseMII CTCAG 1 cut(s) 362
BseNI ACTGG 4 cut(s) 24, 76, 555, 922
BseSI GKGCMC 2 cut(s) 31, 860
BseXI GCAGC 1 cut(s) 832
BseYI CCCAGC 1 cut(s) 779
BshFI GGCC 4 cut(s) 99, 294, 389, 466
BshVI ATCGAT 1 cut(s) 378
BsiHKAI GWGCWC 2 cut(s) 8, 31
BsiSI CCGG 2 cut(s) 542, 928
BslFI GGGAC 1 cut(s) 880
BslI CCNNNNNNNGG 1 cut(s) 462
BsmFI GGGAC 1 cut(s) 880
BsmI GAATGC 1 cut(s) 624
BsnI GGCC 4 cut(s) 99, 294, 389, 466
Bsp1286I GDGCHC 3 cut(s) 8, 31, 860
Bsp143I GATC 6 cut(s) 101, 175, 198, 238, 472, 685
Bsp1720I GCTNAGC 1 cut(s) 19
BspACI CCGC 1 cut(s) 340
BspANI GGCC 4 cut(s) 99, 294, 389, 466
BspCNI CTCAG 1 cut(s) 363
BspDI ATCGAT 1 cut(s) 378
BspLI GGNNCC 2 cut(s) 295, 572
BspPI GGATC 2 cut(s) 246, 680
BsrI ACTGG 4 cut(s) 24, 76, 555, 922
BssECI CCNNGG 4 cut(s) 109, 689, 817, 863
BssMI GATC 6 cut(s) 101, 175, 198, 238, 472, 685
BssNI GRCGYC 1 cut(s) 695
BssT1I CCWWGG 1 cut(s) 109
Bst2UI CCWGG 2 cut(s) 690, 864
BstACI GRCGYC 1 cut(s) 695
BstC8I GCNNGC 2 cut(s) 344, 937
BstDEI CTNAG 2 cut(s) 19, 371
BstDSI CCRYGG 1 cut(s) 817
BstF5I GGATG 4 cut(s) 442, 475, 698, 936
BstKTI GATC 6 cut(s) 104, 178, 201, 241, 475, 688
BstMBI GATC 6 cut(s) 101, 175, 198, 238, 472, 685
BstMWI GCNNNNNNNGC 1 cut(s) 491
BstNI CCWGG 2 cut(s) 690, 864
BstNSI RCATGY 1 cut(s) 949
BstSCI CCNGG 3 cut(s) 540, 688, 862
BstSFI CTRYAG 1 cut(s) 506
BstSLI GKGCMC 2 cut(s) 31, 860
BstV1I GCAGC 1 cut(s) 832
BstX2I RGATCY 1 cut(s) 685
BstXI CCANNNNNNTGG 1 cut(s) 797
BstYI RGATCY 1 cut(s) 685
Bsu15I ATCGAT 1 cut(s) 378
BsuRI GGCC 4 cut(s) 99, 294, 389, 466
BsuTUI ATCGAT 1 cut(s) 378
BtgI CCRYGG 1 cut(s) 817
BtsCI GGATG 4 cut(s) 442, 475, 698, 936
BtsI GCAGTG 1 cut(s) 319
BtsIMutI CAGTG 4 cut(s) 31, 319, 457, 939
Cac8I GCNNGC 2 cut(s) 344, 937
Cfr13I GGNCC 2 cut(s) 293, 387
ClaI ATCGAT 1 cut(s) 378
CseI GACGC 1 cut(s) 684
Csp6I GTAC 2 cut(s) 824, 921
CviAII CATG 4 cut(s) 32, 736, 785, 946
CviQI GTAC 2 cut(s) 824, 921
DdeI CTNAG 2 cut(s) 19, 371
DpnI GATC 6 cut(s) 103, 177, 200, 240, 474, 687
DpnII GATC 6 cut(s) 101, 175, 198, 238, 472, 685
EaeI YGGCCR 1 cut(s) 97
Eco130I CCWWGG 1 cut(s) 109
Eco32I GATATC 1 cut(s) 448
Eco57I CTGAAG 1 cut(s) 614
EcoRI GAATTC 1 cut(s) 416
EcoRII CCWGG 2 cut(s) 688, 862
EcoRV GATATC 1 cut(s) 448
EcoT14I CCWWGG 1 cut(s) 109
ErhI CCWWGG 1 cut(s) 109
FaeI CATG 4 cut(s) 35, 739, 788, 949
FalI AAGNNNNNCTT 2 cut(s) 834, 866
FaqI GGGAC 1 cut(s) 880
FatI CATG 4 cut(s) 31, 735, 784, 945
FauI CCCGC 1 cut(s) 347
FauNDI CATATG 1 cut(s) 306
FbaI TGATCA 2 cut(s) 175, 198
Fnu4HI GCNGC 1 cut(s) 846
FokI GGATG 4 cut(s) 449, 462, 685, 943
Fsp4HI GCNGC 1 cut(s) 846
GluI GCNGC 1 cut(s) 846
GsaI CCCAGC 1 cut(s) 783
HaeIII GGCC 4 cut(s) 99, 294, 389, 466
HapII CCGG 2 cut(s) 542, 928
HgaI GACGC 1 cut(s) 684
Hin1I GRCGYC 1 cut(s) 695
Hin1II CATG 4 cut(s) 35, 739, 788, 949
HinfI GANTC 3 cut(s) 367, 517, 812
HpaII CCGG 2 cut(s) 542, 928
HphI GGTGA 1 cut(s) 396
Hpy166II GTNNAC 1 cut(s) 29
Hpy188I TCNGA 5 cut(s) 70, 180, 372, 422, 967
Hpy188III TCNNGA 7 cut(s) 92, 434, 470, 632, 702, 839, 974
Hpy8I GTNNAC 1 cut(s) 29
Hpy99I CGWCG 1 cut(s) 731
HpyAV CCTTC 3 cut(s) 548, 561, 760
HpyCH4V TGCA 3 cut(s) 29, 485, 949
HpyF10VI GCNNNNNNNGC 1 cut(s) 491
HpyF3I CTNAG 2 cut(s) 19, 371
Hsp92I GRCGYC 1 cut(s) 695
Hsp92II CATG 4 cut(s) 35, 739, 788, 949
Ksp22I TGATCA 2 cut(s) 175, 198
Kzo9I GATC 6 cut(s) 101, 175, 198, 238, 472, 685
LmnI GCTCC 1 cut(s) 587
Lsp1109I GCAGC 1 cut(s) 832
LweI GCATC 3 cut(s) 427, 862, 994
MaeIII GTNAC 3 cut(s) 243, 256, 800
MalI GATC 6 cut(s) 103, 177, 200, 240, 474, 687
MboI GATC 6 cut(s) 101, 175, 198, 238, 472, 685
MboII GAAGA 4 cut(s) 193, 326, 526, 620
MfeI CAATTG 4 cut(s) 486, 605, 757, 807
MflI RGATCY 1 cut(s) 685
MhlI GDGCHC 3 cut(s) 8, 31, 860
MmeI TCCRAC 1 cut(s) 574
MnlI CCTC 7 cut(s) 54, 265, 335, 477, 484, 492, 969
MseI TTAA 1 cut(s) 362
MslI CAYNNNNRTG 4 cut(s) 480, 715, 795, 944
MspI CCGG 2 cut(s) 542, 928
MspR9I CCNGG 3 cut(s) 542, 690, 864
MunI CAATTG 4 cut(s) 486, 605, 757, 807
Mva1269I GAATGC 1 cut(s) 624
MvaI CCWGG 2 cut(s) 690, 864
MwoI GCNNNNNNNGC 1 cut(s) 491
NciI CCSGG 1 cut(s) 542
NdeI CATATG 1 cut(s) 306
NdeII GATC 6 cut(s) 101, 175, 198, 238, 472, 685
NlaIII CATG 4 cut(s) 35, 739, 788, 949
NlaIV GGNNCC 2 cut(s) 295, 572
NmuCI GTSAC 2 cut(s) 243, 800
NspI RCATGY 1 cut(s) 949
OliI CACNNNNGTG 2 cut(s) 715, 795
PctI GAATGC 1 cut(s) 624
PfeI GAWTC 3 cut(s) 367, 517, 812
PflFI GACNNNGTC 1 cut(s) 731
PflMI CCANNNNNTGG 1 cut(s) 462
PkrI GCNGC 1 cut(s) 847
Psp6I CCWGG 2 cut(s) 688, 862
PspFI CCCAGC 1 cut(s) 779
PspGI CCWGG 2 cut(s) 688, 862
PspN4I GGNNCC 2 cut(s) 295, 572
PspPI GGNCC 2 cut(s) 293, 387
PsuI RGATCY 1 cut(s) 685
PsyI GACNNNGTC 1 cut(s) 731
RsaI GTAC 2 cut(s) 825, 922
RsaNI GTAC 2 cut(s) 824, 921
RseI CAYNNNNRTG 4 cut(s) 480, 715, 795, 944
SaqAI TTAA 1 cut(s) 362
SatI GCNGC 1 cut(s) 846
Sau3AI GATC 6 cut(s) 101, 175, 198, 238, 472, 685
Sau96I GGNCC 2 cut(s) 293, 387
ScrFI CCNGG 3 cut(s) 542, 690, 864
SduI GDGCHC 3 cut(s) 8, 31, 860
SetI ASST 9 cut(s) 46, 503, 572, 771, 799, 847, 865, 909, 995
SfaNI GCATC 3 cut(s) 427, 862, 994
SfcI CTRYAG 1 cut(s) 506
SmiMI CAYNNNNRTG 4 cut(s) 480, 715, 795, 944
SmlI CTYRAG 2 cut(s) 468, 851
SmoI CTYRAG 2 cut(s) 468, 851
SsiI CCGC 1 cut(s) 340
StyD4I CCNGG 3 cut(s) 540, 688, 862
StyI CCWWGG 1 cut(s) 109
TaqI TCGA 2 cut(s) 378, 973
TatI WGTACW 1 cut(s) 823
TfiI GAWTC 3 cut(s) 367, 517, 812
Tru1I TTAA 1 cut(s) 362
Tru9I TTAA 1 cut(s) 362
TscAI CASTG 4 cut(s) 31, 326, 457, 946
TseFI GTSAC 2 cut(s) 243, 800
TseI GCWGC 1 cut(s) 845
Tsp45I GTSAC 2 cut(s) 243, 800
TspRI CASTG 4 cut(s) 31, 326, 457, 946
Tth111I GACNNNGTC 1 cut(s) 731
Van91I CCANNNNNTGG 1 cut(s) 462
VneI GTGCAC 1 cut(s) 27
XapI RAATTY 4 cut(s) 191, 275, 283, 416
XceI RCATGY 1 cut(s) 949
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.