MD14G1170200.v1.1

Manganese-dependent ADP-ribose CDP-alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0012506
Physical Location & Seq
Forward (+)
26463657 .. 26465994
2338 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1170200.v1.1.491

Sequence Viewer

Length: 1005 bp
ATGGGCAGCACAAATGGCTTAACAAGTGTGCGGGGGAATCAACCTCTATTTTCGTTTGGGGTAATTTCTGACGTTCAGTATGCTGATATTCCTGATGGCTGCTCTTTCCTTGGTGTTCCACGATACTATCGTCATAGCATTGTTGTATTGCAAAGGGCCGTCCAAAGATGGAATGATCAGAAGAAGCATAAATTTGTGATCAATTTTGGGGACATTGTTGATGGTTTTTGCCCAAAAGACCAATCATTGAATGCTGTAAGAAGAGTTGTTGACGGATTTGAGAATTTCAATGGCCCCGTCTATCATATGATTGGTAATCATTGTCTGTACAATCTTCCCCACAACAAATTAATTCCGATATTGAACATTCCAAGTGTCGATGGTCGTGCCTACTACGACTTTTCACCAGCCCCAGAATTCAGATTTGTTGTTTTGGATGGCTATGATATCAGTGCTATTGGCTGGCCTCAAGATCATCCATGTACAATCGAGGCTTTGAAATTCCTTCAAGAGAAAAATCCAAATTCAGATAAGAACAGTCCGTCTGGACTGGAGGGCCTCGAGAGAAGGTTCCTTATGTTCAACGGAGCTGTTGGAAAGGAACAATTAGAATGGTTAGACGGCATCCTTCAGGAAGCAACAAGTTTGCAACAGAAAGTAGTGATTTGTTGCCATCTGCCTTTAGATCCCGGGGTATCAACCAAAGAAGCACTTTTGTGGAACTACGATGAAGTCATGAGTGTGATACACCGGTACAACTGCGTGAAGGTTTGCCTAGCTGGCCACGACCACAAAGGTGGCCACGCAGTTGATTCCCATGGAATACACCATAGAGTTCTTGAAGCTGCCCTTGAGTGCCCTCCCGGAACAGATGCTTATGGGTACATAGATGTTTATGATGATAAGCTTTCACTCAATGGTACTGACCGAATGGCGAGCACAGACATGCTATTCAATCCTCAAGCACACTTACAAGATAAACGGCATCAAGAAGTTCGTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00564 map00230 map00564
Pfam Domains
Protein Families
Metallophos

Protein Analysis

335

Amino Acids

37.58

Weight (kDa)

5.94

Isoelectric Point (pI)

44.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Metallophos PF00149 18 - 265 1.7e-10 Calcineurin-like phosphoesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012506)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24730 AT4G24730
fragaria_vesca FvH4_5g06420 FvH4_5g06420 FvH4_5g06420 FvH4_5g06420 FvH4_5g06420 FvH4_5g06420
malus_domestica MD14G1170200.v1.1
prunus_persica Prupe.5G164400_v2.0.a1
pyrus_communis pycom14g14210
rosa_chinensis RchiOBHm_Chr7g0192361
rosa_laevigata RLG00000004376
rosa_roxburghii Rroxscaffold_3G00263100
rosa_rugosa Rorug07G0000800
rosa_samantha Rh7BG126900 Rh7CG128500 Rh7DG128600
rosa_wichuraiana Rw7G010720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 31
AclWI GGATC 1 cut(s) 680
AcoI YGGCCR 2 cut(s) 781, 799
AcsI RAATTY 5 cut(s) 191, 283, 416, 500, 523
AcuI CTGAAG 1 cut(s) 614
AfaI GTAC 5 cut(s) 329, 484, 755, 884, 922
AgeI ACCGGT 1 cut(s) 750
AgsI TTSAA 8 cut(s) 250, 289, 364, 499, 509, 583, 842, 955
AleI CACNNNNGTG 2 cut(s) 715, 795
AluBI AGCT 4 cut(s) 590, 779, 845, 907
AluI AGCT 4 cut(s) 590, 779, 845, 907
Alw21I GWGCWC 1 cut(s) 941
AlwI GGATC 1 cut(s) 680
Ama87I CYCGRG 2 cut(s) 560, 689
AoxI GGCC 6 cut(s) 156, 292, 464, 556, 781, 799
ApeKI GCWGC 3 cut(s) 6, 99, 845
ApoI RAATTY 5 cut(s) 191, 283, 416, 500, 523
AseI ATTAAT 1 cut(s) 350
AsiGI ACCGGT 1 cut(s) 750
AspS9I GGNCC 3 cut(s) 156, 293, 556
AsuC2I CCSGG 3 cut(s) 690, 691, 864
AsuHPI GGTGA 1 cut(s) 396
AvaI CYCGRG 2 cut(s) 560, 689
BaeGI GKGCMC 1 cut(s) 860
BaeI ACNNNNGTAYC 4 cut(s) 115, 148, 737, 770
BalI TGGCCA 2 cut(s) 783, 801
Bbv12I GWGCWC 1 cut(s) 941
BbvI GCAGC 3 cut(s) 18, 86, 832
BccI CCATC 6 cut(s) 89, 162, 215, 374, 431, 681
BceAI ACGGC 3 cut(s) 143, 637, 998
BcgI CGANNNNNNTGC 2 cut(s) 368, 402
BclI TGATCA 2 cut(s) 175, 198
BcnI CCSGG 3 cut(s) 690, 691, 864
BfaI CTAG 1 cut(s) 776
BglI GCCNNNNNGGC 1 cut(s) 780
BisI GCNGC 3 cut(s) 7, 100, 846
BlsI GCNGC 3 cut(s) 8, 101, 847
Bme1390I CCNGG 3 cut(s) 690, 691, 864
BmeT110I CYCGRG 2 cut(s) 560, 689
BmgT120I GGNCC 3 cut(s) 156, 293, 556
BmiI GGNNCC 2 cut(s) 295, 572
BmrFI CCNGG 3 cut(s) 690, 691, 864
BmsI GCATC 3 cut(s) 633, 862, 994
BpmI CTGGAG 1 cut(s) 572
BpuEI CTTGAG 3 cut(s) 453, 872, 945
BpuMI CCSGG 3 cut(s) 690, 691, 864
BsaJI CCNNGG 4 cut(s) 109, 689, 690, 817
BsaWI WCCGGW 1 cut(s) 750
Bse118I RCCGGY 1 cut(s) 750
Bse1I ACTGG 1 cut(s) 555
BseDI CCNNGG 4 cut(s) 109, 689, 690, 817
BseGI GGATG 3 cut(s) 442, 475, 624
BseNI ACTGG 1 cut(s) 555
BseSI GKGCMC 1 cut(s) 860
BseXI GCAGC 3 cut(s) 18, 86, 832
BshFI GGCC 6 cut(s) 158, 294, 466, 558, 783, 801
BshTI ACCGGT 1 cut(s) 750
BsiHKAI GWGCWC 1 cut(s) 941
BsiHKCI CYCGRG 2 cut(s) 560, 689
BsiSI CCGG 3 cut(s) 690, 751, 864
BslFI GGGAC 1 cut(s) 224
BsmFI GGGAC 1 cut(s) 224
BsmI GAATGC 1 cut(s) 256
BsnI GGCC 6 cut(s) 158, 294, 466, 558, 783, 801
BsoBI CYCGRG 2 cut(s) 560, 689
Bsp1286I GDGCHC 2 cut(s) 860, 941
Bsp1407I TGTACA 2 cut(s) 327, 482
Bsp143I GATC 4 cut(s) 175, 198, 472, 685
Bsp19I CCATGG 1 cut(s) 817
BspACI CCGC 1 cut(s) 31
BspANI GGCC 6 cut(s) 158, 294, 466, 558, 783, 801
BspHI TCATGA 1 cut(s) 735
BspLI GGNNCC 2 cut(s) 295, 572
BspPI GGATC 1 cut(s) 680
BsrFI RCCGGY 1 cut(s) 750
BsrGI TGTACA 2 cut(s) 327, 482
BsrI ACTGG 1 cut(s) 555
BssAI RCCGGY 1 cut(s) 750
BssECI CCNNGG 4 cut(s) 109, 689, 690, 817
BssMI GATC 4 cut(s) 175, 198, 472, 685
BssT1I CCWWGG 2 cut(s) 109, 817
Bst4CI ACNGT 1 cut(s) 539
Bst6I CTCTTC 1 cut(s) 256
BstAUI TGTACA 2 cut(s) 327, 482
BstC8I GCNNGC 3 cut(s) 464, 781, 937
BstDSI CCRYGG 1 cut(s) 817
BstF5I GGATG 3 cut(s) 442, 475, 624
BstKTI GATC 4 cut(s) 178, 201, 475, 688
BstMBI GATC 4 cut(s) 175, 198, 472, 685
BstMWI GCNNNNNNNGC 2 cut(s) 15, 780
BstNSI RCATGY 1 cut(s) 949
BstSCI CCNGG 3 cut(s) 688, 689, 862
BstSLI GKGCMC 1 cut(s) 860
BstV1I GCAGC 3 cut(s) 18, 86, 832
BstX2I RGATCY 1 cut(s) 685
BstXI CCANNNNNNTGG 1 cut(s) 797
BstYI RGATCY 1 cut(s) 685
BsuRI GGCC 6 cut(s) 158, 294, 466, 558, 783, 801
BtgI CCRYGG 1 cut(s) 817
BtsCI GGATG 3 cut(s) 442, 475, 624
BtsIMutI CAGTG 1 cut(s) 457
Cac8I GCNNGC 3 cut(s) 464, 781, 937
CciI TCATGA 1 cut(s) 735
Cfr10I RCCGGY 1 cut(s) 750
Cfr13I GGNCC 3 cut(s) 156, 293, 556
Cfr9I CCCGGG 1 cut(s) 689
Csp6I GTAC 5 cut(s) 328, 483, 754, 883, 921
CspAI ACCGGT 1 cut(s) 750
CviAII CATG 4 cut(s) 480, 736, 818, 946
CviQI GTAC 5 cut(s) 328, 483, 754, 883, 921
DpnI GATC 4 cut(s) 177, 200, 474, 687
DpnII GATC 4 cut(s) 175, 198, 472, 685
EaeI YGGCCR 2 cut(s) 781, 799
Eam1104I CTCTTC 1 cut(s) 256
EarI CTCTTC 1 cut(s) 256
Eco130I CCWWGG 2 cut(s) 109, 817
Eco32I GATATC 1 cut(s) 448
Eco57I CTGAAG 1 cut(s) 614
Eco88I CYCGRG 2 cut(s) 560, 689
EcoO109I RGGNCCY 1 cut(s) 556
EcoRI GAATTC 1 cut(s) 416
EcoRV GATATC 1 cut(s) 448
EcoT14I CCWWGG 2 cut(s) 109, 817
ErhI CCWWGG 2 cut(s) 109, 817
FaeI CATG 4 cut(s) 483, 739, 821, 949
FalI AAGNNNNNCTT 4 cut(s) 696, 728, 834, 866
FaqI GGGAC 1 cut(s) 224
FatI CATG 4 cut(s) 479, 735, 817, 945
FauI CCCGC 1 cut(s) 24
FauNDI CATATG 1 cut(s) 306
FbaI TGATCA 2 cut(s) 175, 198
Fnu4HI GCNGC 3 cut(s) 7, 100, 846
FokI GGATG 3 cut(s) 449, 462, 611
Fsp4HI GCNGC 3 cut(s) 7, 100, 846
FspBI CTAG 1 cut(s) 776
GluI GCNGC 3 cut(s) 7, 100, 846
GsuI CTGGAG 1 cut(s) 572
HaeIII GGCC 6 cut(s) 158, 294, 466, 558, 783, 801
HapII CCGG 3 cut(s) 690, 751, 864
Hin1II CATG 4 cut(s) 483, 739, 821, 949
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HindIII AAGCTT 1 cut(s) 905
HinfI GANTC 2 cut(s) 37, 812
HpaII CCGG 3 cut(s) 690, 751, 864
HphI GGTGA 1 cut(s) 396
Hpy166II GTNNAC 1 cut(s) 271
Hpy188I TCNGA 5 cut(s) 70, 180, 357, 422, 529
Hpy188III TCNNGA 9 cut(s) 92, 470, 509, 546, 562, 632, 736, 839, 989
Hpy8I GTNNAC 1 cut(s) 271
HpyAV CCTTC 4 cut(s) 515, 561, 638, 760
HpyCH4III ACNGT 1 cut(s) 539
HpyCH4IV ACGT 1 cut(s) 72
HpyCH4V TGCA 2 cut(s) 151, 649
HpyF10VI GCNNNNNNNGC 2 cut(s) 15, 780
HpySE526I ACGT 1 cut(s) 72
Hsp92II CATG 4 cut(s) 483, 739, 821, 949
Ksp22I TGATCA 2 cut(s) 175, 198
Kzo9I GATC 4 cut(s) 175, 198, 472, 685
LmnI GCTCC 1 cut(s) 587
Lsp1109I GCAGC 3 cut(s) 18, 86, 832
LweI GCATC 3 cut(s) 633, 862, 994
MaeI CTAG 1 cut(s) 776
MaeII ACGT 1 cut(s) 72
MaeIII GTNAC 1 cut(s) 998
MalI GATC 4 cut(s) 177, 200, 474, 687
MboI GATC 4 cut(s) 175, 198, 472, 685
MboII GAAGA 3 cut(s) 193, 273, 326
MflI RGATCY 1 cut(s) 685
MhlI GDGCHC 2 cut(s) 860, 941
MlsI TGGCCA 2 cut(s) 783, 801
MluNI TGGCCA 2 cut(s) 783, 801
MmeI TCCRAC 1 cut(s) 574
MnlI CCTC 7 cut(s) 54, 477, 484, 547, 569, 870, 969
Mox20I TGGCCA 2 cut(s) 783, 801
MscI TGGCCA 2 cut(s) 783, 801
MseI TTAA 2 cut(s) 20, 350
MslI CAYNNNNRTG 4 cut(s) 715, 740, 795, 944
Msp20I TGGCCA 2 cut(s) 783, 801
MspI CCGG 3 cut(s) 690, 751, 864
MspR9I CCNGG 3 cut(s) 690, 691, 864
Mva1269I GAATGC 1 cut(s) 256
MwoI GCNNNNNNNGC 2 cut(s) 15, 780
NciI CCSGG 3 cut(s) 690, 691, 864
NcoI CCATGG 1 cut(s) 817
NdeI CATATG 1 cut(s) 306
NdeII GATC 4 cut(s) 175, 198, 472, 685
NlaIII CATG 4 cut(s) 483, 739, 821, 949
NlaIV GGNNCC 2 cut(s) 295, 572
NspI RCATGY 1 cut(s) 949
OliI CACNNNNGTG 2 cut(s) 715, 795
PaeR7I CTCGAG 1 cut(s) 560
PagI TCATGA 1 cut(s) 735
PcsI WCGNNNNNNNCGW 1 cut(s) 127
PctI GAATGC 1 cut(s) 256
PfeI GAWTC 2 cut(s) 37, 812
PfoI TCCNGGA 1 cut(s) 862
PinAI ACCGGT 1 cut(s) 750
PkrI GCNGC 3 cut(s) 8, 101, 847
PshBI ATTAAT 1 cut(s) 350
PspN4I GGNNCC 2 cut(s) 295, 572
PspPI GGNCC 3 cut(s) 156, 293, 556
PsuI RGATCY 1 cut(s) 685
RsaI GTAC 5 cut(s) 329, 484, 755, 884, 922
RsaNI GTAC 5 cut(s) 328, 483, 754, 883, 921
RseI CAYNNNNRTG 4 cut(s) 715, 740, 795, 944
SaqAI TTAA 2 cut(s) 20, 350
SatI GCNGC 3 cut(s) 7, 100, 846
Sau3AI GATC 4 cut(s) 175, 198, 472, 685
Sau96I GGNCC 3 cut(s) 156, 293, 556
ScrFI CCNGG 3 cut(s) 690, 691, 864
SduI GDGCHC 2 cut(s) 860, 941
SetI ASST 9 cut(s) 46, 75, 572, 592, 771, 781, 799, 847, 909
SfaNI GCATC 3 cut(s) 633, 862, 994
Sfr274I CTCGAG 1 cut(s) 560
SlaI CTCGAG 1 cut(s) 560
SmaI CCCGGG 1 cut(s) 691
SmiMI CAYNNNNRTG 4 cut(s) 715, 740, 795, 944
SmlI CTYRAG 4 cut(s) 468, 560, 851, 960
SmoI CTYRAG 4 cut(s) 468, 560, 851, 960
SsiI CCGC 1 cut(s) 31
SspMI CTAG 1 cut(s) 776
StyD4I CCNGG 3 cut(s) 688, 689, 862
StyI CCWWGG 2 cut(s) 109, 817
TaaI ACNGT 1 cut(s) 539
TaiI ACGT 1 cut(s) 75
TaqI TCGA 3 cut(s) 378, 489, 561
TaqII GACCGA 1 cut(s) 942
TatI WGTACW 2 cut(s) 327, 482
TfiI GAWTC 2 cut(s) 37, 812
Tru1I TTAA 2 cut(s) 20, 350
Tru9I TTAA 2 cut(s) 20, 350
TscAI CASTG 1 cut(s) 457
TseI GCWGC 3 cut(s) 6, 99, 845
TspDTI ATGAA 1 cut(s) 744
TspGWI ACGGA 3 cut(s) 288, 531, 600
TspMI CCCGGG 1 cut(s) 689
TspRI CASTG 1 cut(s) 457
VspI ATTAAT 1 cut(s) 350
XapI RAATTY 5 cut(s) 191, 283, 416, 500, 523
XceI RCATGY 1 cut(s) 949
XhoI CTCGAG 1 cut(s) 560
XmaI CCCGGG 1 cut(s) 689
XspI CTAG 1 cut(s) 776
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.