Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0009901

Physical Location & Seq

Genomic Coordinates Reverse (-)

4724281 .. 4726090

Gene Structure 1810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g08100.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGCCAGAGACTTGGAGACGTACTGGTCACCGAGTTGCATGTCACTTGCTTTGCTTGGTCAAGGCAGCCTATCTCAAGGTACACCGACATGTTGTCCACCTCGCCATCACAAACTATCGTCGTCCAACGCCTTGGCGTGGGGCAACGTATCATTGTGACGGCGAACCCGGCCAATGTGGGTACATTCTCAAGACCAACTTCTCTAACTTCCCAAAAGGCAAGCCCCTCACGGAGTTCCTCGGCGACTTGTTCGGCTGCGGCATATTCAACGTCAACGGTGAGCTGTGGTCAACGCAGCGCAAGCTTGCCAGCCATGAGTTTAGCACAAGGTCTTTAAGGGAGTTCGTCGTGAAAACTCTAGAGGAGGAAGTGGAGCAGCGACTTGTTCCGCTTCTAGAAGAAGCTGCAGAGAGTCAAAGGGTTTTAGACATGCAAGACGTGTTGAAGAGGTTTTCATTTGACACGGTTTGTAAGGTCTCCTTGGGTACCGACCCGTTTTGCCTCAACTTGTCCCGCCCTGTGCCGCCGCTCGTCAAGGCCTTCGACTGCGCGTCGGAGATAAGTGCCCGGCGTGCGACGGCGCCGCTCTACGTGATTTGGAAGCTGAAGCGCACTTTGGCTGTTGGTTCTGAAAGCAAGCTCAAAGATGCTATCAAAGTCGTACATGATTCTGTTCAAGAGGTTGCGGCGGCTGGGGTAGCGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002213 GO:0003006 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009611 GO:0009694 GO:0009791 GO:0009908 GO:0009987 GO:0010154 GO:0010817 GO:0012505 GO:0016020 GO:0016491 GO:0019752 GO:0022414 GO:0031984 GO:0032501 GO:0032502 GO:0032787 GO:0042175 GO:0042445 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048466 GO:0048467 GO:0048480 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0052694 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0090567 GO:0098827 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

236

Amino Acids

26.41

Weight (kDa)

9.02

Isoelectric Point (pI)

42.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	66 - 228	3.7e-12	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009901)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48520 AT5G63450 AT5G63450
fragaria_vesca	FvH4_5g08100 FvH4_5g08170
malus_domestica	MD06G1142900.v1.1 MD14G1158100.v1.1
prunus_persica	Prupe.5G152200_v2.0.a1
pyrus_communis	pycom06g13270 pycom14g13170
rosa_chinensis	RchiOBHm_Chr7g0190341
rosa_laevigata	RLG00000004540
rosa_multiflora	Rmu_co8407537.1_g000001 Rmu_ssc0000038.1_g000004
rosa_roxburghii	Rroxscaffold_3G00264710
rosa_rugosa	Rorug06G0504000
rosa_samantha	Rh7AG109700 Rh7BG112300 Rh7CG114600 Rh7DG112700
rosa_wichuraiana	Rw7G009520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	24
Acc65I	GGTACC	1 cut(s)	485
AccB1I	GGYRCC	2 cut(s)	485, 580
AccBSI	CCGCTC	2 cut(s)	529, 586
AccII	CGCG	1 cut(s)	551
AciI	CCGC	9 cut(s)	258, 389, 514, 524, 527, 584, 686, 689, 701
AcoI	YGGCCR	1 cut(s)	169
AcuI	CTGAAG	1 cut(s)	626
AcyI	GRCGYC	1 cut(s)	581
AfaI	GTAC	5 cut(s)	22, 81, 182, 487, 663
AfiI	CCNNNNNNNGG	1 cut(s)	137
AflIII	ACRYGT	2 cut(s)	88, 438
AgsI	TTSAA	3 cut(s)	268, 445, 677
AhdI	GACNNNNNGTC	2 cut(s)	92, 550
AjiI	CACGTC	1 cut(s)	439
AjuI	GAANNNNNNNTTGG	2 cut(s)	599, 631
AluBI	AGCT	5 cut(s)	283, 304, 404, 604, 640
AluI	AGCT	5 cut(s)	283, 304, 404, 604, 640
Alw26I	GTCTC	3 cut(s)	2, 10, 481
AoxI	GGCC	2 cut(s)	169, 537
ApeKI	GCWGC	5 cut(s)	65, 255, 295, 376, 404
Asp718I	GGTACC	1 cut(s)	485
AspLEI	GCGC	4 cut(s)	300, 551, 583, 612
AsuC2I	CCSGG	2 cut(s)	168, 568
AsuHPI	GGTGA	2 cut(s)	20, 290
BaeGI	GKGCMC	1 cut(s)	568
BanI	GGYRCC	2 cut(s)	485, 580
BbvI	GCAGC	5 cut(s)	77, 242, 307, 388, 391
BccI	CCATC	1 cut(s)	113
BceAI	ACGGC	2 cut(s)	175, 594
BcnI	CCSGG	2 cut(s)	168, 568
BcoDI	GTCTC	3 cut(s)	2, 10, 481
BfaI	CTAG	2 cut(s)	359, 395
BfmI	CTRYAG	1 cut(s)	405
BfoI	RGCGCY	1 cut(s)	584
Bme1390I	CCNGG	2 cut(s)	168, 568
BmeRI	GACNNNNNGTC	2 cut(s)	92, 550
BmgBI	CACGTC	1 cut(s)	439
BmiI	GGNNCC	2 cut(s)	487, 582
BmrFI	CCNGG	2 cut(s)	168, 568
BmsI	GCATC	1 cut(s)	637
BpuEI	CTTGAG	2 cut(s)	59, 173
BpuMI	CCSGG	2 cut(s)	168, 568
BsaAI	YACGTR	1 cut(s)	592
BsaHI	GRCGYC	1 cut(s)	581
BsaI	GGTCTC	1 cut(s)	481
BsaJI	CCNNGG	3 cut(s)	131, 238, 480
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
Bse1I	ACTGG	1 cut(s)	28
BseDI	CCNNGG	3 cut(s)	131, 238, 480
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseNI	ACTGG	1 cut(s)	28
BseRI	GAGGAG	1 cut(s)	377
BseSI	GKGCMC	1 cut(s)	568
BseXI	GCAGC	5 cut(s)	77, 242, 307, 388, 391
BseYI	CCCAGC	1 cut(s)	692
Bsh1236I	CGCG	1 cut(s)	551
BshFI	GGCC	2 cut(s)	171, 539
BshNI	GGYRCC	2 cut(s)	485, 580
BsiSI	CCGG	2 cut(s)	168, 568
BslFI	GGGAC	1 cut(s)	496
BslI	CCNNNNNNNGG	1 cut(s)	137
BsmAI	GTCTC	3 cut(s)	2, 10, 481
BsmBI	CGTCTC	1 cut(s)	10
BsmFI	GGGAC	1 cut(s)	496
BsnI	GGCC	2 cut(s)	171, 539
Bso31I	GGTCTC	1 cut(s)	481
Bsp1286I	GDGCHC	1 cut(s)	568
BspACI	CCGC	9 cut(s)	258, 389, 514, 524, 527, 584, 686, 689, 701
BspANI	GGCC	2 cut(s)	171, 539
BspFNI	CGCG	1 cut(s)	551
BspLI	GGNNCC	2 cut(s)	487, 582
BspMAI	CTGCAG	1 cut(s)	409
BspT107I	GGYRCC	2 cut(s)	485, 580
BspTNI	GGTCTC	1 cut(s)	481
BsrBI	CCGCTC	2 cut(s)	529, 586
BsrI	ACTGG	1 cut(s)	28
BssECI	CCNNGG	3 cut(s)	131, 238, 480
BssNI	GRCGYC	1 cut(s)	581
BssT1I	CCWWGG	2 cut(s)	131, 480
Bst4CI	ACNGT	2 cut(s)	278, 466
Bst6I	CTCTTC	1 cut(s)	440
BstACI	GRCGYC	1 cut(s)	581
BstBAI	YACGTR	1 cut(s)	592
BstC8I	GCNNGC	6 cut(s)	221, 302, 306, 310, 573, 638
BstEII	GGTNACC	1 cut(s)	26
BstFNI	CGCG	1 cut(s)	551
BstH2I	RGCGCY	1 cut(s)	584
BstHHI	GCGC	4 cut(s)	300, 551, 583, 612
BstMAI	GTCTC	3 cut(s)	2, 10, 481
BstMWI	GCNNNNNNNGC	4 cut(s)	168, 301, 572, 698
BstNSI	RCATGY	3 cut(s)	42, 92, 433
BstPI	GGTNACC	1 cut(s)	26
BstSCI	CCNGG	2 cut(s)	166, 566
BstSFI	CTRYAG	1 cut(s)	405
BstSLI	GKGCMC	1 cut(s)	568
BstUI	CGCG	1 cut(s)	551
BstV1I	GCAGC	5 cut(s)	77, 242, 307, 388, 391
BstXI	CCANNNNNNTGG	2 cut(s)	12, 132
BsuRI	GGCC	2 cut(s)	171, 539
BtrI	CACGTC	1 cut(s)	439
Cac8I	GCNNGC	6 cut(s)	221, 302, 306, 310, 573, 638
CfoI	GCGC	4 cut(s)	300, 551, 583, 612
CseI	GACGC	1 cut(s)	540
Csp6I	GTAC	5 cut(s)	21, 80, 181, 486, 662
CviAII	CATG	5 cut(s)	39, 89, 314, 430, 665
CviQI	GTAC	5 cut(s)	21, 80, 181, 486, 662
DinI	GGCGCC	1 cut(s)	582
DrdI	GACNNNNNNGTC	1 cut(s)	24
DriI	GACNNNNNGTC	2 cut(s)	92, 550
DseDI	GACNNNNNNGTC	1 cut(s)	24
EaeI	YGGCCR	1 cut(s)	169
Eam1104I	CTCTTC	1 cut(s)	440
Eam1105I	GACNNNNNGTC	2 cut(s)	92, 550
EarI	CTCTTC	1 cut(s)	440
Eco130I	CCWWGG	2 cut(s)	131, 480
Eco147I	AGGCCT	1 cut(s)	539
Eco31I	GGTCTC	1 cut(s)	481
Eco57I	CTGAAG	1 cut(s)	626
Eco91I	GGTNACC	1 cut(s)	26
EcoO65I	GGTNACC	1 cut(s)	26
EcoT14I	CCWWGG	2 cut(s)	131, 480
EgeI	GGCGCC	1 cut(s)	582
EheI	GGCGCC	1 cut(s)	582
ErhI	CCWWGG	2 cut(s)	131, 480
Esp3I	CGTCTC	1 cut(s)	10
FaeI	CATG	5 cut(s)	42, 92, 317, 433, 668
FaiI	YATR	7 cut(s)	40, 90, 263, 315, 431, 666, 706
FalI	AAGNNNNNCTT	4 cut(s)	182, 214, 464, 496
FaqI	GGGAC	1 cut(s)	496
FatI	CATG	5 cut(s)	38, 88, 313, 429, 664
FauI	CCCGC	1 cut(s)	521
FspBI	CTAG	2 cut(s)	359, 395
GlaI	GCGC	4 cut(s)	299, 550, 582, 611
GsaI	CCCAGC	1 cut(s)	696
HaeII	RGCGCY	1 cut(s)	584
HaeIII	GGCC	2 cut(s)	171, 539
HapII	CCGG	2 cut(s)	168, 568
HgaI	GACGC	1 cut(s)	540
HhaI	GCGC	4 cut(s)	300, 551, 583, 612
Hin1I	GRCGYC	1 cut(s)	581
Hin1II	CATG	5 cut(s)	42, 92, 317, 433, 668
Hin6I	GCGC	4 cut(s)	298, 549, 581, 610
HinP1I	GCGC	4 cut(s)	298, 549, 581, 610
HincII	GTYRAC	2 cut(s)	274, 291
HindII	GTYRAC	2 cut(s)	274, 291
HindIII	AAGCTT	1 cut(s)	302
HinfI	GANTC	2 cut(s)	412, 668
HpaII	CCGG	2 cut(s)	168, 568
HphI	GGTGA	2 cut(s)	20, 290
Hpy166II	GTNNAC	4 cut(s)	82, 97, 274, 291
Hpy188I	TCNGA	2 cut(s)	556, 631
Hpy188III	TCNNGA	5 cut(s)	190, 349, 359, 395, 677
Hpy8I	GTNNAC	4 cut(s)	82, 97, 274, 291
Hpy99I	CGWCG	4 cut(s)	123, 350, 556, 580
HpyAV	CCTTC	1 cut(s)	550
HpyCH4III	ACNGT	2 cut(s)	278, 466
HpyCH4IV	ACGT	5 cut(s)	19, 146, 270, 438, 591
HpyCH4V	TGCA	3 cut(s)	38, 407, 433
HpyF10VI	GCNNNNNNNGC	4 cut(s)	168, 301, 572, 698
HpySE526I	ACGT	5 cut(s)	19, 146, 270, 438, 591
Hsp92I	GRCGYC	1 cut(s)	581
Hsp92II	CATG	5 cut(s)	42, 92, 317, 433, 668
HspAI	GCGC	4 cut(s)	298, 549, 581, 610
KasI	GGCGCC	1 cut(s)	580
KpnI	GGTACC	1 cut(s)	489
LmnI	GCTCC	1 cut(s)	373
LpnPI	CCDG	7 cut(s)	9, 18, 181, 322, 531, 581, 678
Lsp1109I	GCAGC	5 cut(s)	77, 242, 307, 388, 391
LweI	GCATC	1 cut(s)	637
MaeI	CTAG	2 cut(s)	359, 395
MaeII	ACGT	5 cut(s)	19, 146, 270, 438, 591
MaeIII	GTNAC	3 cut(s)	26, 41, 155
MbiI	CCGCTC	2 cut(s)	529, 586
MboII	GAAGA	2 cut(s)	410, 457
MhlI	GDGCHC	1 cut(s)	568
Mly113I	GGCGCC	1 cut(s)	581
MlyI	GAGTC	1 cut(s)	421
MmeI	TCCRAC	2 cut(s)	149, 534
MnlI	CCTC	8 cut(s)	110, 236, 248, 355, 358, 441, 512, 673
MseI	TTAA	1 cut(s)	335
MslI	CAYNNNNRTG	1 cut(s)	87
MspI	CCGG	2 cut(s)	168, 568
MspR9I	CCNGG	2 cut(s)	168, 568
MvnI	CGCG	1 cut(s)	551
MwoI	GCNNNNNNNGC	4 cut(s)	168, 301, 572, 698
NarI	GGCGCC	1 cut(s)	581
NciI	CCSGG	2 cut(s)	168, 568
NlaIII	CATG	5 cut(s)	42, 92, 317, 433, 668
NlaIV	GGNNCC	2 cut(s)	487, 582
NmeAIII	GCCGAG	1 cut(s)	219
NmuCI	GTSAC	3 cut(s)	26, 41, 155
NspI	RCATGY	3 cut(s)	42, 92, 433
PceI	AGGCCT	1 cut(s)	539
PciI	ACATGT	1 cut(s)	88
PfeI	GAWTC	1 cut(s)	668
PleI	GAGTC	1 cut(s)	420
PluTI	GGCGCC	1 cut(s)	584
PpsI	GAGTC	1 cut(s)	420
Ppu21I	YACGTR	1 cut(s)	592
PscI	ACATGT	1 cut(s)	88
PspEI	GGTNACC	1 cut(s)	26
PspFI	CCCAGC	1 cut(s)	692
PspN4I	GGNNCC	2 cut(s)	487, 582
PstI	CTGCAG	1 cut(s)	409
RsaI	GTAC	5 cut(s)	22, 81, 182, 487, 663
RsaNI	GTAC	5 cut(s)	21, 80, 181, 486, 662
RseI	CAYNNNNRTG	1 cut(s)	87
SaqAI	TTAA	1 cut(s)	335
SchI	GAGTC	1 cut(s)	421
ScrFI	CCNGG	2 cut(s)	168, 568
SduI	GDGCHC	1 cut(s)	568
SfaNI	GCATC	1 cut(s)	637
SfcI	CTRYAG	1 cut(s)	405
SfoI	GGCGCC	1 cut(s)	582
SmiMI	CAYNNNNRTG	1 cut(s)	87
SmlI	CTYRAG	2 cut(s)	74, 188
SmoI	CTYRAG	2 cut(s)	74, 188
SseBI	AGGCCT	1 cut(s)	539
SsiI	CCGC	9 cut(s)	258, 389, 514, 524, 527, 584, 686, 689, 701
SspDI	GGCGCC	1 cut(s)	580
SspMI	CTAG	2 cut(s)	359, 395
StuI	AGGCCT	1 cut(s)	539
StyD4I	CCNGG	2 cut(s)	166, 566
StyI	CCWWGG	2 cut(s)	131, 480
TaaI	ACNGT	2 cut(s)	278, 466
TaiI	ACGT	5 cut(s)	22, 149, 273, 441, 594
TaqI	TCGA	1 cut(s)	543
TauI	GCSGC	6 cut(s)	261, 526, 529, 586, 689, 692
TfiI	GAWTC	1 cut(s)	668
Tru1I	TTAA	1 cut(s)	335
Tru9I	TTAA	1 cut(s)	335
TseFI	GTSAC	3 cut(s)	26, 41, 155
TseI	GCWGC	5 cut(s)	65, 255, 295, 376, 404
Tsp45I	GTSAC	3 cut(s)	26, 41, 155
TspDTI	ATGAA	1 cut(s)	444
TspGWI	ACGGA	1 cut(s)	245
XbaI	TCTAGA	2 cut(s)	358, 394
XceI	RCATGY	3 cut(s)	42, 92, 433
XspI	CTAG	2 cut(s)	359, 395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.