Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8407537.1

Orthogroup ID

OG0009901

Physical Location & Seq

Genomic Coordinates Forward (+)

436 .. 1263

Gene Structure 828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8407537.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

atgttcatcactctcctcatactctggtctctaactctgctcctcctctgcttcttgttctccatcatccaacaatcctatagcatcaaatcatcaaaaaagccttcgctgttctcctcttacggtcctccttcctaccccataatcggttgcctaatctccttctacaaaaaccagcaccgcctcttggactggtacaccgacatgttgtccagctcgccgtcacaaaccatcgtcttgcgccgcctagggatgcgccgccgcatcattgtgacggcgaaccccgccaacgtggagtacattctcaagaccaacttctcaaacttccccaagggcgagccgctcacggagttcctcggcgactttctcggctgcggcatattcaacgttgacggcgagctctggtcaacgcagcgtaagctggccagccacgagtttagcacaaagtcgctgagggagttcgtcgtgaaatctctagaggatgaagtggagcagcgactggttcctcttctagaagaagctgcggatagtcaaagggttttggacatgcaagacgtgttgaggaggtttgcttttgacacggtttgtaaggtctctttgggtaccgacccgttttgcttggatttgggccggcccgtgccggctcttgtcaaagccttcgactgcgcggcggagataagtgcccggcgcgcgtcggcgccggtgtacttgatttggaagttgaagcgcgctttgggtgttgggtctgaaaacaagctcaaagaagctgtcaaagtcgtacatgattctgtacaaggtatgaaaatatctacattttttttttcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002213 GO:0003006 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009611 GO:0009694 GO:0009791 GO:0009908 GO:0009987 GO:0010154 GO:0010817 GO:0012505 GO:0016020 GO:0016491 GO:0019752 GO:0022414 GO:0031984 GO:0032501 GO:0032502 GO:0032787 GO:0042175 GO:0042445 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048466 GO:0048467 GO:0048480 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0052694 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0090567 GO:0098827 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

275

Amino Acids

31.11

Weight (kDa)

8.98

Isoelectric Point (pI)

45.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009901)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48520 AT5G63450 AT5G63450
fragaria_vesca	FvH4_5g08100 FvH4_5g08170
malus_domestica	MD06G1142900.v1.1 MD14G1158100.v1.1
prunus_persica	Prupe.5G152200_v2.0.a1
pyrus_communis	pycom06g13270 pycom14g13170
rosa_chinensis	RchiOBHm_Chr7g0190341
rosa_laevigata	RLG00000004540
rosa_multiflora	Rmu_co8407537.1_g000001 Rmu_ssc0000038.1_g000004
rosa_roxburghii	Rroxscaffold_3G00264710
rosa_rugosa	Rorug06G0504000
rosa_samantha	Rh7AG109700 Rh7BG112300 Rh7CG114600 Rh7DG112700
rosa_wichuraiana	Rw7G009520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	602
AccB1I	GGYRCC	2 cut(s)	602, 697
AccBSI	CCGCTC	1 cut(s)	343
AccII	CGCG	4 cut(s)	668, 690, 692, 729
AclI	AACGTT	1 cut(s)	387
AcoI	YGGCCR	1 cut(s)	423
AcyI	GRCGYC	1 cut(s)	698
AfaI	GTAC	6 cut(s)	197, 299, 604, 707, 780, 792
AfiI	CCNNNNNNNGG	2 cut(s)	146, 187
AflIII	ACRYGT	2 cut(s)	204, 555
AgsI	TTSAA	2 cut(s)	385, 724
AhdI	GACNNNNNGTC	1 cut(s)	208
AjiI	CACGTC	1 cut(s)	556
AjuI	GAANNNNNNNTTGG	2 cut(s)	716, 748
AluBI	AGCT	6 cut(s)	216, 400, 421, 521, 757, 767
AluI	AGCT	6 cut(s)	216, 400, 421, 521, 757, 767
Alw21I	GWGCWC	1 cut(s)	402
Alw26I	GTCTC	2 cut(s)	33, 598
AlwNI	CAGNNNCTG	1 cut(s)	499
AoxI	GGCC	3 cut(s)	423, 628, 632
ApeKI	GCWGC	4 cut(s)	372, 412, 493, 521
ArsI	GACNNNNNNTTYG	2 cut(s)	753, 785
Asp718I	GGTACC	1 cut(s)	602
AspA2I	CCTAGG	1 cut(s)	247
AspLEI	GCGC	8 cut(s)	243, 258, 668, 690, 692, 700, 729, 731
AspS9I	GGNCC	3 cut(s)	125, 628, 633
AsuC2I	CCSGG	1 cut(s)	685
AvaII	GGWCC	1 cut(s)	125
AvrII	CCTAGG	1 cut(s)	247
BaeGI	GKGCMC	1 cut(s)	685
BalI	TGGCCA	1 cut(s)	425
BanI	GGYRCC	2 cut(s)	602, 697
BanII	GRGCYC	1 cut(s)	402
BauI	CACGAG	1 cut(s)	431
Bbv12I	GWGCWC	1 cut(s)	402
BbvCI	CCTCAGC	1 cut(s)	452
BbvI	GCAGC	4 cut(s)	359, 424, 505, 508
BccI	CCATC	2 cut(s)	71, 239
BceAI	ACGGC	3 cut(s)	205, 291, 409
BcnI	CCSGG	1 cut(s)	685
BcoDI	GTCTC	2 cut(s)	33, 598
BfaI	CTAG	3 cut(s)	248, 476, 512
BfmI	CTRYAG	1 cut(s)	79
BfoI	RGCGCY	1 cut(s)	701
BlnI	CCTAGG	1 cut(s)	247
Bme1390I	CCNGG	1 cut(s)	685
Bme18I	GGWCC	1 cut(s)	125
BmeRI	GACNNNNNGTC	1 cut(s)	208
BmgBI	CACGTC	1 cut(s)	556
BmgT120I	GGNCC	3 cut(s)	125, 628, 633
BmiI	GGNNCC	3 cut(s)	504, 604, 699
BmrFI	CCNGG	1 cut(s)	685
BmsI	GCATC	3 cut(s)	93, 243, 273
Bpu10I	CCTNAGC	1 cut(s)	452
BpuEI	CTTGAG	1 cut(s)	290
BpuMI	CCSGG	1 cut(s)	685
BsaHI	GRCGYC	1 cut(s)	698
BsaI	GGTCTC	2 cut(s)	33, 598
BsaJI	CCNNGG	3 cut(s)	247, 330, 355
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 187
Bse118I	RCCGGY	3 cut(s)	630, 640, 700
Bse1I	ACTGG	2 cut(s)	197, 504
BseDI	CCNNGG	3 cut(s)	247, 330, 355
BseGI	GGATG	3 cut(s)	66, 258, 487
BseLI	CCNNNNNNNGG	2 cut(s)	146, 187
BseMII	CTCAG	1 cut(s)	443
BseNI	ACTGG	2 cut(s)	197, 504
BsePI	GCGCGC	2 cut(s)	688, 727
BseRI	GAGGAG	5 cut(s)	5, 32, 35, 106, 577
BseSI	GKGCMC	1 cut(s)	685
BseXI	GCAGC	4 cut(s)	359, 424, 505, 508
Bsh1236I	CGCG	4 cut(s)	668, 690, 692, 729
BshFI	GGCC	3 cut(s)	425, 630, 634
BshNI	GGYRCC	2 cut(s)	602, 697
BsiHKAI	GWGCWC	1 cut(s)	402
BsiSI	CCGG	4 cut(s)	631, 641, 685, 701
BslI	CCNNNNNNNGG	2 cut(s)	146, 187
BsmAI	GTCTC	2 cut(s)	33, 598
BsnI	GGCC	3 cut(s)	425, 630, 634
Bso31I	GGTCTC	2 cut(s)	33, 598
Bsp1286I	GDGCHC	2 cut(s)	402, 685
Bsp1407I	TGTACA	1 cut(s)	790
BspANI	GGCC	3 cut(s)	425, 630, 634
BspCNI	CTCAG	1 cut(s)	444
BspFNI	CGCG	4 cut(s)	668, 690, 692, 729
BspLI	GGNNCC	3 cut(s)	504, 604, 699
BspT107I	GGYRCC	2 cut(s)	602, 697
BspTNI	GGTCTC	2 cut(s)	33, 598
BsrBI	CCGCTC	1 cut(s)	343
BsrFI	RCCGGY	3 cut(s)	630, 640, 700
BsrGI	TGTACA	1 cut(s)	790
BsrI	ACTGG	2 cut(s)	197, 504
BssAI	RCCGGY	3 cut(s)	630, 640, 700
BssECI	CCNNGG	3 cut(s)	247, 330, 355
BssHII	GCGCGC	2 cut(s)	688, 727
BssNI	GRCGYC	1 cut(s)	698
BssSI	CACGAG	1 cut(s)	431
BssT1I	CCWWGG	2 cut(s)	247, 330
Bst2BI	CACGAG	1 cut(s)	431
Bst4CI	ACNGT	2 cut(s)	125, 583
Bst6I	CTCTTC	1 cut(s)	513
BstACI	GRCGYC	1 cut(s)	698
BstAUI	TGTACA	1 cut(s)	790
BstC8I	GCNNGC	9 cut(s)	218, 338, 398, 423, 427, 632, 642, 690, 729
BstDEI	CTNAG	2 cut(s)	452, 825
BstF5I	GGATG	3 cut(s)	66, 258, 487
BstFNI	CGCG	4 cut(s)	668, 690, 692, 729
BstH2I	RGCGCY	1 cut(s)	701
BstHHI	GCGC	8 cut(s)	243, 258, 668, 690, 692, 700, 729, 731
BstMAI	GTCTC	2 cut(s)	33, 598
BstMWI	GCNNNNNNNGC	3 cut(s)	284, 418, 689
BstNSI	RCATGY	2 cut(s)	208, 550
BstSCI	CCNGG	1 cut(s)	683
BstSFI	CTRYAG	1 cut(s)	79
BstSLI	GKGCMC	1 cut(s)	685
BstUI	CGCG	4 cut(s)	668, 690, 692, 729
BstV1I	GCAGC	4 cut(s)	359, 424, 505, 508
BsuRI	GGCC	3 cut(s)	425, 630, 634
BtrI	CACGTC	1 cut(s)	556
BtsCI	GGATG	3 cut(s)	66, 258, 487
Cac8I	GCNNGC	9 cut(s)	218, 338, 398, 423, 427, 632, 642, 690, 729
CaiI	CAGNNNCTG	1 cut(s)	499
CfoI	GCGC	8 cut(s)	243, 258, 668, 690, 692, 700, 729, 731
Cfr10I	RCCGGY	3 cut(s)	630, 640, 700
Cfr13I	GGNCC	3 cut(s)	125, 628, 633
CseI	GACGC	1 cut(s)	681
Csp6I	GTAC	6 cut(s)	196, 298, 603, 706, 779, 791
CviAII	CATG	3 cut(s)	205, 547, 782
CviQI	GTAC	6 cut(s)	196, 298, 603, 706, 779, 791
DdeI	CTNAG	2 cut(s)	452, 825
DinI	GGCGCC	1 cut(s)	699
DriI	GACNNNNNGTC	1 cut(s)	208
EaeI	YGGCCR	1 cut(s)	423
Eam1104I	CTCTTC	1 cut(s)	513
Eam1105I	GACNNNNNGTC	1 cut(s)	208
EarI	CTCTTC	1 cut(s)	513
EciI	GGCGGA	1 cut(s)	686
Ecl136II	GAGCTC	1 cut(s)	400
Eco130I	CCWWGG	2 cut(s)	247, 330
Eco24I	GRGCYC	1 cut(s)	402
Eco31I	GGTCTC	2 cut(s)	33, 598
Eco47I	GGWCC	1 cut(s)	125
Eco53kI	GAGCTC	1 cut(s)	400
EcoICRI	GAGCTC	1 cut(s)	400
EcoT14I	CCWWGG	2 cut(s)	247, 330
EcoT38I	GRGCYC	1 cut(s)	402
EgeI	GGCGCC	1 cut(s)	699
EheI	GGCGCC	1 cut(s)	699
ErhI	CCWWGG	2 cut(s)	247, 330
FaeI	CATG	3 cut(s)	208, 550, 785
FaiI	YATR	8 cut(s)	20, 81, 143, 206, 380, 548, 783, 800
FalI	AAGNNNNNCTT	2 cut(s)	299, 331
FatI	CATG	3 cut(s)	204, 546, 781
FauI	CCCGC	1 cut(s)	292
FokI	GGATG	3 cut(s)	53, 265, 494
FriOI	GRGCYC	1 cut(s)	402
FseI	GGCCGGCC	1 cut(s)	634
FspBI	CTAG	3 cut(s)	248, 476, 512
GlaI	GCGC	8 cut(s)	242, 257, 667, 689, 691, 699, 728, 730
HaeII	RGCGCY	1 cut(s)	701
HaeIII	GGCC	3 cut(s)	425, 630, 634
HapII	CCGG	4 cut(s)	631, 641, 685, 701
HgaI	GACGC	1 cut(s)	681
HhaI	GCGC	8 cut(s)	243, 258, 668, 690, 692, 700, 729, 731
Hin1I	GRCGYC	1 cut(s)	698
Hin1II	CATG	3 cut(s)	208, 550, 785
Hin6I	GCGC	8 cut(s)	241, 256, 666, 688, 690, 698, 727, 729
HinP1I	GCGC	8 cut(s)	241, 256, 666, 688, 690, 698, 727, 729
HincII	GTYRAC	2 cut(s)	391, 408
HindII	GTYRAC	2 cut(s)	391, 408
HinfI	GANTC	1 cut(s)	785
HpaII	CCGG	4 cut(s)	631, 641, 685, 701
Hpy166II	GTNNAC	4 cut(s)	198, 391, 408, 706
Hpy188I	TCNGA	1 cut(s)	748
Hpy188III	TCNNGA	4 cut(s)	307, 466, 476, 512
Hpy8I	GTNNAC	4 cut(s)	198, 391, 408, 706
Hpy99I	CGWCG	2 cut(s)	467, 697
HpyAV	CCTTC	4 cut(s)	114, 141, 172, 667
HpyCH4III	ACNGT	2 cut(s)	125, 583
HpyCH4IV	ACGT	3 cut(s)	291, 387, 555
HpyCH4V	TGCA	1 cut(s)	550
HpyF10VI	GCNNNNNNNGC	3 cut(s)	284, 418, 689
HpyF3I	CTNAG	2 cut(s)	452, 825
HpySE526I	ACGT	3 cut(s)	291, 387, 555
Hsp92I	GRCGYC	1 cut(s)	698
Hsp92II	CATG	3 cut(s)	208, 550, 785
HspAI	GCGC	8 cut(s)	241, 256, 666, 688, 690, 698, 727, 729
KasI	GGCGCC	1 cut(s)	697
KpnI	GGTACC	1 cut(s)	606
KroI	GCCGGC	2 cut(s)	630, 640
KroNI	GCCGGC	2 cut(s)	632, 642
LmnI	GCTCC	2 cut(s)	45, 490
Lsp1109I	GCAGC	4 cut(s)	359, 424, 505, 508
LweI	GCATC	3 cut(s)	93, 243, 273
MaeI	CTAG	3 cut(s)	248, 476, 512
MaeII	ACGT	3 cut(s)	291, 387, 555
MaeIII	GTNAC	2 cut(s)	222, 271
MbiI	CCGCTC	1 cut(s)	343
MboII	GAAGA	2 cut(s)	500, 527
MhlI	GDGCHC	2 cut(s)	402, 685
MlsI	TGGCCA	1 cut(s)	425
MluNI	TGGCCA	1 cut(s)	425
Mly113I	GGCGCC	1 cut(s)	698
MmeI	TCCRAC	1 cut(s)	94
Mox20I	TGGCCA	1 cut(s)	425
MroNI	GCCGGC	2 cut(s)	630, 640
MscI	TGGCCA	1 cut(s)	425
MslI	CAYNNNNRTG	2 cut(s)	203, 269
Msp20I	TGGCCA	1 cut(s)	425
MspI	CCGG	4 cut(s)	631, 641, 685, 701
MspR9I	CCNGG	1 cut(s)	685
MvnI	CGCG	4 cut(s)	668, 690, 692, 729
MwoI	GCNNNNNNNGC	3 cut(s)	284, 418, 689
NaeI	GCCGGC	2 cut(s)	632, 642
NarI	GGCGCC	1 cut(s)	698
NciI	CCSGG	1 cut(s)	685
NgoMIV	GCCGGC	2 cut(s)	630, 640
NlaIII	CATG	3 cut(s)	208, 550, 785
NlaIV	GGNNCC	3 cut(s)	504, 604, 699
NmeAIII	GCCGAG	2 cut(s)	336, 348
NmuCI	GTSAC	2 cut(s)	222, 271
NspI	RCATGY	2 cut(s)	208, 550
PauI	GCGCGC	2 cut(s)	688, 727
PciI	ACATGT	1 cut(s)	204
PcsI	WCGNNNNNNNCGW	1 cut(s)	393
PdiI	GCCGGC	2 cut(s)	632, 642
PfeI	GAWTC	1 cut(s)	785
PluTI	GGCGCC	1 cut(s)	701
PscI	ACATGT	1 cut(s)	204
Psp124BI	GAGCTC	1 cut(s)	402
Psp1406I	AACGTT	1 cut(s)	387
PspN4I	GGNNCC	3 cut(s)	504, 604, 699
PspPI	GGNCC	3 cut(s)	125, 628, 633
PstNI	CAGNNNCTG	1 cut(s)	499
PteI	GCGCGC	2 cut(s)	688, 727
RigI	GGCCGGCC	1 cut(s)	634
RsaI	GTAC	6 cut(s)	197, 299, 604, 707, 780, 792
RsaNI	GTAC	6 cut(s)	196, 298, 603, 706, 779, 791
RseI	CAYNNNNRTG	2 cut(s)	203, 269
SacI	GAGCTC	1 cut(s)	402
Sau96I	GGNCC	3 cut(s)	125, 628, 633
ScrFI	CCNGG	1 cut(s)	685
SduI	GDGCHC	2 cut(s)	402, 685
SfaNI	GCATC	3 cut(s)	93, 243, 273
SfcI	CTRYAG	1 cut(s)	79
SfoI	GGCGCC	1 cut(s)	699
SgrAI	CRCCGGYG	1 cut(s)	700
SinI	GGWCC	1 cut(s)	125
SmiMI	CAYNNNNRTG	2 cut(s)	203, 269
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
SspDI	GGCGCC	1 cut(s)	697
SspMI	CTAG	3 cut(s)	248, 476, 512
SstI	GAGCTC	1 cut(s)	402
StyD4I	CCNGG	1 cut(s)	683
StyI	CCWWGG	2 cut(s)	247, 330
TaaI	ACNGT	2 cut(s)	125, 583
TaiI	ACGT	3 cut(s)	294, 390, 558
TaqI	TCGA	1 cut(s)	660
TatI	WGTACW	3 cut(s)	297, 705, 790
TauI	GCSGC	6 cut(s)	246, 261, 264, 343, 378, 671
TfiI	GAWTC	1 cut(s)	785
TseFI	GTSAC	2 cut(s)	222, 271
TseI	GCWGC	4 cut(s)	372, 412, 493, 521
Tsp45I	GTSAC	2 cut(s)	222, 271
TspDTI	ATGAA	2 cut(s)	498, 815
TspGWI	ACGGA	1 cut(s)	362
VpaK11BI	GGWCC	1 cut(s)	125
XbaI	TCTAGA	2 cut(s)	475, 511
XceI	RCATGY	2 cut(s)	208, 550
XmaJI	CCTAGG	1 cut(s)	247
XspI	CTAG	3 cut(s)	248, 476, 512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.