Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009125

Physical Location & Seq

Genomic Coordinates Forward (+)

61978377 .. 61980648

Gene Structure 2272 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0504000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGACAGAAGATTTGTTCAGGGTTTGCTTGAAGGGGAGAGAGATGGGGAGAAGCAGTACTTACTATGATAAGAATGATGGACTGAAGAAAGGAGCCTGGGCTGCAAGTGAAGACCAGATTGTCAAAGCCTACGTCAAAAAACACGGTGTCGGAAAATGGGGCAAACTATCCAGGGAAACAGGTCTGAAGAGATGTGGGAAGAGTGTGAGACTCAGATGGTTGAACTATCTGAGGCCTGATATTATCAAAGGCAACATTACAGAAGATGAAGAAGAGCTCATCATCAGGCTCCACAAACTCTTGGGAAACAGATGGTCATTGATAGCCGGAAGGATACCAGGGCGAACTGACAATGAAATCAAAAACTACTGGAATTCCACCTTAAAGAGGAAGCTACAACAAGAAAATCACTTAGAAGTGTCTAAAGATGAGGAGATCAAGGAGGACTTGTCATCCTCTGCCGTTGTTGCCGCTGCCACTGATGAGGACGAAGATCATCATCGTCAGCATCATGATGCTGACGTTGGAATTGGAGTTGCAGCTGAAGCAACTAACTATAAGGGTACTGGTGATGATGAATATCTGAGGGATGACCTTTGGTGGAACTTCATAATGGATTTCAATGATACCCAACTCGACGTATCTGAATTCCAAAACGGCATCCCCGAGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009909 GO:0009987 GO:0010224 GO:0010468 GO:0019222 GO:0022622 GO:0032501 GO:0032502 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048364 GO:0048580 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0090304 GO:0099402 GO:1901360 GO:2000024 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

SWIB

Protein Analysis

224

Amino Acids

25.76

Weight (kDa)

5.57

Isoelectric Point (pI)

37.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	30 - 77	4.4e-13	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	33 - 91	4e-08	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	83 - 127	9e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	87 - 136	4.8e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63460 AT5G63460 AT5G63460 AT5G63460
fragaria_vesca	FvH4_5g08180 FvH4_5g08180
malus_domestica	MD06G1142800.v1.1 MD14G1158000.v1.1
prunus_persica	Prupe.5G152100_v2.0.a1
pyrus_communis	pycom06g13260 pycom14g13150
rosa_chinensis	RchiOBHm_Chr7g0190331
rosa_laevigata	RLG00000004541
rosa_multiflora	Rmu_sc0005487.1_g000001 Rmu_ssc0000038.1_g000005
rosa_roxburghii	Rroxscaffold_3G00264720
rosa_rugosa	Rorug06G0504000
rosa_samantha	Rh7AG109600 Rh7BG112200 Rh7CG114500 Rh7DG112600
rosa_wichuraiana	Rw7G009510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	119
AciI	CCGC	1 cut(s)	471
AcsI	RAATTY	2 cut(s)	373, 647
AcuI	CTGAAG	3 cut(s)	104, 206, 564
AfaI	GTAC	2 cut(s)	58, 565
AfiI	CCNNNNNNNGG	1 cut(s)	387
AgsI	TTSAA	3 cut(s)	31, 223, 622
AjnI	CCWGG	3 cut(s)	95, 170, 337
AluBI	AGCT	3 cut(s)	277, 394, 542
AluI	AGCT	3 cut(s)	277, 394, 542
Alw21I	GWGCWC	1 cut(s)	279
Alw26I	GTCTC	1 cut(s)	202
Ama87I	CYCGRG	1 cut(s)	665
AoxI	GGCC	1 cut(s)	233
ApeKI	GCWGC	3 cut(s)	101, 473, 539
ApoI	RAATTY	2 cut(s)	373, 647
ArsI	GACNNNNNNTTYG	3 cut(s)	27, 117, 149
AsuHPI	GGTGA	1 cut(s)	581
AvaI	CYCGRG	1 cut(s)	665
BanII	GRGCYC	1 cut(s)	279
BbsI	GAAGAC	1 cut(s)	117
Bbv12I	GWGCWC	1 cut(s)	279
BbvI	GCAGC	3 cut(s)	88, 460, 551
BccI	CCATC	4 cut(s)	37, 71, 210, 306
BceAI	ACGGC	2 cut(s)	446, 673
BciT130I	CCWGG	3 cut(s)	97, 172, 339
BciVI	GTATCC	1 cut(s)	327
BcoDI	GTCTC	1 cut(s)	202
BfuI	GTATCC	1 cut(s)	327
BisI	GCNGC	4 cut(s)	102, 471, 474, 540
BlsI	GCNGC	4 cut(s)	103, 472, 475, 541
BmcAI	AGTACT	1 cut(s)	58
Bme1390I	CCNGG	3 cut(s)	97, 172, 339
BmeT110I	CYCGRG	1 cut(s)	665
BmiI	GGNNCC	2 cut(s)	94, 290
BmrFI	CCNGG	3 cut(s)	97, 172, 339
BmsI	GCATC	3 cut(s)	505, 517, 669
BpiI	GAAGAC	1 cut(s)	117
BsaBI	GATNNNNATC	2 cut(s)	498, 579
BsaJI	CCNNGG	3 cut(s)	96, 171, 338
BsaXI	ACNNNNNCTCC	4 cut(s)	40, 70, 434, 464
Bsc4I	CCNNNNNNNGG	1 cut(s)	387
Bse1I	ACTGG	2 cut(s)	374, 571
Bse8I	GATNNNNATC	2 cut(s)	498, 579
BseBI	CCWGG	3 cut(s)	97, 172, 339
BseDI	CCNNGG	3 cut(s)	96, 171, 338
BseGI	GGATG	3 cut(s)	452, 595, 660
BseJI	GATNNNNATC	2 cut(s)	498, 579
BseLI	CCNNNNNNNGG	1 cut(s)	387
BseMII	CTCAG	3 cut(s)	221, 226, 575
BseNI	ACTGG	2 cut(s)	374, 571
BseRI	GAGGAG	1 cut(s)	446
BseXI	GCAGC	3 cut(s)	88, 460, 551
BshFI	GGCC	1 cut(s)	235
BsiHKAI	GWGCWC	1 cut(s)	279
BsiHKCI	CYCGRG	1 cut(s)	665
BsiSI	CCGG	1 cut(s)	327
BslI	CCNNNNNNNGG	1 cut(s)	387
BsmAI	GTCTC	1 cut(s)	202
BsnI	GGCC	1 cut(s)	235
BsoBI	CYCGRG	1 cut(s)	665
Bsp1286I	GDGCHC	1 cut(s)	279
Bsp143I	GATC	2 cut(s)	435, 493
BspACI	CCGC	1 cut(s)	471
BspANI	GGCC	1 cut(s)	235
BspCNI	CTCAG	3 cut(s)	222, 225, 576
BspHI	TCATGA	1 cut(s)	511
BspLI	GGNNCC	2 cut(s)	94, 290
BspQI	GCTCTTC	1 cut(s)	267
BsrI	ACTGG	2 cut(s)	374, 571
BssECI	CCNNGG	3 cut(s)	96, 171, 338
BssMI	GATC	2 cut(s)	435, 493
Bst2UI	CCWGG	3 cut(s)	97, 172, 339
Bst4CI	ACNGT	1 cut(s)	146
Bst6I	CTCTTC	3 cut(s)	182, 194, 267
BstDEI	CTNAG	4 cut(s)	212, 230, 412, 584
BstENI	CCTNNNNNAGG	1 cut(s)	385
BstF5I	GGATG	3 cut(s)	452, 595, 660
BstKTI	GATC	2 cut(s)	438, 496
BstMAI	GTCTC	1 cut(s)	202
BstMBI	GATC	2 cut(s)	435, 493
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 467, 545
BstNI	CCWGG	3 cut(s)	97, 172, 339
BstSCI	CCNGG	3 cut(s)	95, 170, 337
BstV1I	GCAGC	3 cut(s)	88, 460, 551
BstV2I	GAAGAC	1 cut(s)	117
BsuI	GTATCC	1 cut(s)	327
BsuRI	GGCC	1 cut(s)	235
BtsCI	GGATG	3 cut(s)	452, 595, 660
BtsIMutI	CAGTG	1 cut(s)	477
CciI	TCATGA	1 cut(s)	511
Csp6I	GTAC	2 cut(s)	57, 564
CviAII	CATG	1 cut(s)	512
CviJI	RGCY	9 cut(s)	95, 101, 128, 235, 277, 289, 326, 394, 542
CviKI_1	RGCY	9 cut(s)	95, 101, 128, 235, 277, 289, 326, 394, 542
CviQI	GTAC	2 cut(s)	57, 564
DdeI	CTNAG	4 cut(s)	212, 230, 412, 584
DpnI	GATC	2 cut(s)	437, 495
DpnII	GATC	2 cut(s)	435, 493
DrdI	GACNNNNNNGTC	1 cut(s)	119
DseDI	GACNNNNNNGTC	1 cut(s)	119
Eam1104I	CTCTTC	3 cut(s)	182, 194, 267
EarI	CTCTTC	3 cut(s)	182, 194, 267
Ecl136II	GAGCTC	1 cut(s)	277
Eco147I	AGGCCT	1 cut(s)	235
Eco24I	GRGCYC	1 cut(s)	279
Eco53kI	GAGCTC	1 cut(s)	277
Eco57I	CTGAAG	3 cut(s)	104, 206, 564
Eco88I	CYCGRG	1 cut(s)	665
EcoICRI	GAGCTC	1 cut(s)	277
EcoNI	CCTNNNNNAGG	1 cut(s)	385
EcoRI	GAATTC	2 cut(s)	373, 647
EcoRII	CCWGG	3 cut(s)	95, 170, 337
EcoT38I	GRGCYC	1 cut(s)	279
FaeI	CATG	1 cut(s)	515
FaiI	YATR	4 cut(s)	66, 513, 558, 611
FalI	AAGNNNNNCTT	4 cut(s)	43, 75, 431, 463
FatI	CATG	1 cut(s)	511
Fnu4HI	GCNGC	4 cut(s)	102, 471, 474, 540
FokI	GGATG	3 cut(s)	439, 602, 647
FriOI	GRGCYC	1 cut(s)	279
Fsp4HI	GCNGC	4 cut(s)	102, 471, 474, 540
GluI	GCNGC	4 cut(s)	102, 471, 474, 540
HaeIII	GGCC	1 cut(s)	235
HapII	CCGG	1 cut(s)	327
Hin1II	CATG	1 cut(s)	515
HinfI	GANTC	1 cut(s)	210
HpaII	CCGG	1 cut(s)	327
HphI	GGTGA	1 cut(s)	581
Hpy188I	TCNGA	6 cut(s)	152, 186, 215, 231, 585, 646
Hpy188III	TCNNGA	1 cut(s)	512
Hpy99I	CGWCG	1 cut(s)	641
HpyAV	CCTTC	2 cut(s)	25, 324
HpyCH4III	ACNGT	1 cut(s)	146
HpyCH4IV	ACGT	3 cut(s)	132, 522, 639
HpyCH4V	TGCA	2 cut(s)	104, 539
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 467, 545
HpyF3I	CTNAG	4 cut(s)	212, 230, 412, 584
HpySE526I	ACGT	3 cut(s)	132, 522, 639
Hsp92II	CATG	1 cut(s)	515
Kzo9I	GATC	2 cut(s)	435, 493
LguI	GCTCTTC	1 cut(s)	267
LmnI	GCTCC	2 cut(s)	92, 294
Lsp1109I	GCAGC	3 cut(s)	88, 460, 551
LweI	GCATC	3 cut(s)	505, 517, 669
MaeII	ACGT	3 cut(s)	132, 522, 639
MalI	GATC	2 cut(s)	437, 495
MboI	GATC	2 cut(s)	435, 493
MboII	GAAGA	9 cut(s)	20, 97, 122, 199, 211, 275, 281, 284, 503
MhlI	GDGCHC	1 cut(s)	279
MluCI	AATT	3 cut(s)	373, 528, 647
MlyI	GAGTC	1 cut(s)	204
MmeI	TCCRAC	2 cut(s)	130, 505
MnlI	CCTC	7 cut(s)	225, 381, 424, 436, 466, 478, 579
MseI	TTAA	1 cut(s)	383
MslI	CAYNNNNRTG	1 cut(s)	513
MspA1I	CMGCKG	2 cut(s)	473, 542
MspI	CCGG	1 cut(s)	327
MspR9I	CCNGG	3 cut(s)	97, 172, 339
MvaI	CCWGG	3 cut(s)	97, 172, 339
MwoI	GCNNNNNNNGC	3 cut(s)	101, 467, 545
NdeII	GATC	2 cut(s)	435, 493
NlaIII	CATG	1 cut(s)	515
NlaIV	GGNNCC	2 cut(s)	94, 290
PagI	TCATGA	1 cut(s)	511
PceI	AGGCCT	1 cut(s)	235
PciSI	GCTCTTC	1 cut(s)	267
PcsI	WCGNNNNNNNCGW	1 cut(s)	663
PkrI	GCNGC	4 cut(s)	103, 472, 475, 541
PleI	GAGTC	1 cut(s)	204
PpsI	GAGTC	1 cut(s)	204
Psp124BI	GAGCTC	1 cut(s)	279
Psp6I	CCWGG	3 cut(s)	95, 170, 337
PspGI	CCWGG	3 cut(s)	95, 170, 337
PspN4I	GGNNCC	2 cut(s)	94, 290
PvuII	CAGCTG	1 cut(s)	542
RsaI	GTAC	2 cut(s)	58, 565
RsaNI	GTAC	2 cut(s)	57, 564
RseI	CAYNNNNRTG	1 cut(s)	513
SacI	GAGCTC	1 cut(s)	279
SapI	GCTCTTC	1 cut(s)	267
SaqAI	TTAA	1 cut(s)	383
SatI	GCNGC	4 cut(s)	102, 471, 474, 540
Sau3AI	GATC	2 cut(s)	435, 493
ScaI	AGTACT	1 cut(s)	58
SchI	GAGTC	1 cut(s)	204
ScrFI	CCNGG	3 cut(s)	97, 172, 339
SduI	GDGCHC	1 cut(s)	279
SetI	ASST	9 cut(s)	135, 184, 279, 383, 396, 525, 544, 597, 642
SfaNI	GCATC	3 cut(s)	505, 517, 669
SmiMI	CAYNNNNRTG	1 cut(s)	513
Sse9I	AATT	3 cut(s)	373, 528, 647
SseBI	AGGCCT	1 cut(s)	235
SsiI	CCGC	1 cut(s)	471
SstI	GAGCTC	1 cut(s)	279
StuI	AGGCCT	1 cut(s)	235
StyD4I	CCNGG	3 cut(s)	95, 170, 337
TaaI	ACNGT	1 cut(s)	146
TaiI	ACGT	3 cut(s)	135, 525, 642
TaqI	TCGA	1 cut(s)	636
TasI	AATT	3 cut(s)	373, 528, 647
TatI	WGTACW	1 cut(s)	56
TauI	GCSGC	1 cut(s)	473
Tru1I	TTAA	1 cut(s)	383
Tru9I	TTAA	1 cut(s)	383
TscAI	CASTG	1 cut(s)	484
TseI	GCWGC	3 cut(s)	101, 473, 539
TspDTI	ATGAA	4 cut(s)	282, 369, 591, 598
TspRI	CASTG	1 cut(s)	484
XagI	CCTNNNNNAGG	1 cut(s)	385
XapI	RAATTY	2 cut(s)	373, 647
ZrmI	AGTACT	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.