Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009125

Physical Location & Seq

Genomic Coordinates Forward (+)

9452771 .. 9455804

Gene Structure 3034 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16998

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGAGGGCTTCTCTTCTCAGCCGTCCGATTCCAATCAAGCGGCTTCCGGCGCTTCCATTTCCCTCCAAAACCTCCCCTCCCGCGGCCTCTTCTCCGCCCCCGTTCTCTCTTTGAATCCGGAGTATGGTAGGATGCGAGTTTGTGTCTGTGAGTACGAGACATCACTCCCAGAGGATGAACATATAAAAACAAACCAACAAAACATATTGATTAGATCACTTAAGCTTAAGAAACAGAAGGAGAAGGGAGATTCCAGTTCAAAGGATGTGAAAGGTGCAGGTGCAGCTGAGGGCTCAAGAAAGAGGGTTGCTGAAAGAGTTTTGGACCGGGCGCCAGCTAAGAAAGCCTCTATGCAACCTCGTCAAGAGGAATCAAGCAATCAAGCATCTAGTAGGGACTTCCAGGGATTAACTGTAGAGAGGCTCCGTGCCCTTTTGAAGGCTAAAGGTCTTTCCGTAAAGGGAAAGAAGGAGGAATTGATTGCACGGCTGAGGAGTTCAAGTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDA1 SAP

Protein Analysis

169

Amino Acids

18.42

Weight (kDa)

9.82

Isoelectric Point (pI)

53.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DDA1	PF10172	22 - 80	6.4e-07	Det1 complexing ubiquitin ligase
SAP	PF02037	133 - 165	3.1e-10	SAP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63460 AT5G63460 AT5G63460 AT5G63460
fragaria_vesca	FvH4_5g08180 FvH4_5g08180
malus_domestica	MD06G1142800.v1.1 MD14G1158000.v1.1
prunus_persica	Prupe.5G152100_v2.0.a1
pyrus_communis	pycom06g13260 pycom14g13150
rosa_chinensis	RchiOBHm_Chr7g0190331
rosa_laevigata	RLG00000004541
rosa_multiflora	Rmu_sc0005487.1_g000001 Rmu_ssc0000038.1_g000005
rosa_roxburghii	Rroxscaffold_3G00264720
rosa_rugosa	Rorug06G0504000
rosa_samantha	Rh7AG109600 Rh7BG112200 Rh7CG114500 Rh7DG112600
rosa_wichuraiana	Rw7G009510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	269
Acc36I	ACCTGC	1 cut(s)	269
AccB1I	GGYRCC	1 cut(s)	331
AccII	CGCG	1 cut(s)	84
AccIII	TCCGGA	1 cut(s)	118
AciI	CCGC	4 cut(s)	41, 82, 84, 96
AcyI	GRCGYC	1 cut(s)	332
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	3 cut(s)	83, 125, 439
AflII	CTTAAG	2 cut(s)	221, 227
AgsI	TTSAA	4 cut(s)	115, 261, 439, 501
AjnI	CCWGG	1 cut(s)	402
AluBI	AGCT	3 cut(s)	226, 287, 338
AluI	AGCT	3 cut(s)	226, 287, 338
Alw26I	GTCTC	1 cut(s)	152
Aor13HI	TCCGGA	1 cut(s)	118
AoxI	GGCC	1 cut(s)	85
ApeKI	GCWGC	1 cut(s)	284
AspLEI	GCGC	2 cut(s)	53, 334
AspS9I	GGNCC	1 cut(s)	325
AsuC2I	CCSGG	1 cut(s)	329
AvaII	GGWCC	1 cut(s)	325
BaeGI	GKGCMC	1 cut(s)	433
BanI	GGYRCC	1 cut(s)	331
BanII	GRGCYC	1 cut(s)	296
BbvCI	CCTCAGC	2 cut(s)	288, 491
BbvI	GCAGC	1 cut(s)	296
BceAI	ACGGC	2 cut(s)	7, 503
BciT130I	CCWGG	1 cut(s)	404
BcnI	CCSGG	1 cut(s)	329
BcoDI	GTCTC	1 cut(s)	152
BfaI	CTAG	1 cut(s)	390
BfmI	CTRYAG	1 cut(s)	414
BfoI	RGCGCY	2 cut(s)	54, 335
BfrI	CTTAAG	2 cut(s)	221, 227
BfuAI	ACCTGC	1 cut(s)	269
BisI	GCNGC	3 cut(s)	42, 85, 285
BlsI	GCNGC	3 cut(s)	43, 86, 286
Bme1390I	CCNGG	2 cut(s)	329, 404
Bme18I	GGWCC	1 cut(s)	325
BmgT120I	GGNCC	1 cut(s)	325
BmiI	GGNNCC	2 cut(s)	333, 425
BmrFI	CCNGG	2 cut(s)	329, 404
BmsI	GCATC	2 cut(s)	123, 395
BplI	GAGNNNNNCTC	1 cut(s)	28
Bpu10I	CCTNAGC	2 cut(s)	288, 491
BpuEI	CTTGAG	1 cut(s)	280
BpuMI	CCSGG	1 cut(s)	329
BsaBI	GATNNNNATC	1 cut(s)	33
BsaHI	GRCGYC	1 cut(s)	332
BsaJI	CCNNGG	2 cut(s)	82, 403
BsaWI	WCCGGW	1 cut(s)	118
BsaXI	ACNNNNNCTCC	3 cut(s)	62, 92, 487
Bsc4I	CCNNNNNNNGG	3 cut(s)	83, 125, 439
Bse1I	ACTGG	1 cut(s)	255
Bse8I	GATNNNNATC	1 cut(s)	33
BseAI	TCCGGA	1 cut(s)	118
BseBI	CCWGG	1 cut(s)	404
BseDI	CCNNGG	2 cut(s)	82, 403
BseGI	GGATG	3 cut(s)	138, 181, 271
BseJI	GATNNNNATC	1 cut(s)	33
BseLI	CCNNNNNNNGG	3 cut(s)	83, 125, 439
BseMII	CTCAG	3 cut(s)	32, 279, 482
BseNI	ACTGG	1 cut(s)	255
BseRI	GAGGAG	1 cut(s)	508
BseSI	GKGCMC	1 cut(s)	433
BseXI	GCAGC	1 cut(s)	296
BsgI	GTGCAG	2 cut(s)	297, 303
Bsh1236I	CGCG	1 cut(s)	84
BshFI	GGCC	1 cut(s)	87
BshNI	GGYRCC	1 cut(s)	331
BsiSI	CCGG	3 cut(s)	48, 119, 328
BslFI	GGGAC	1 cut(s)	410
BslI	CCNNNNNNNGG	3 cut(s)	83, 125, 439
BsmAI	GTCTC	1 cut(s)	152
BsmFI	GGGAC	1 cut(s)	410
BsnI	GGCC	1 cut(s)	87
Bsp1286I	GDGCHC	2 cut(s)	296, 433
Bsp13I	TCCGGA	1 cut(s)	118
Bsp143I	GATC	1 cut(s)	215
BspACI	CCGC	4 cut(s)	41, 82, 84, 96
BspANI	GGCC	1 cut(s)	87
BspCNI	CTCAG	3 cut(s)	31, 280, 483
BspEI	TCCGGA	1 cut(s)	118
BspFNI	CGCG	1 cut(s)	84
BspLI	GGNNCC	2 cut(s)	333, 425
BspMI	ACCTGC	1 cut(s)	269
BspT107I	GGYRCC	1 cut(s)	331
BspTI	CTTAAG	2 cut(s)	221, 227
BsrI	ACTGG	1 cut(s)	255
BssECI	CCNNGG	2 cut(s)	82, 403
BssMI	GATC	1 cut(s)	215
BssNI	GRCGYC	1 cut(s)	332
Bst2UI	CCWGG	1 cut(s)	404
Bst4CI	ACNGT	1 cut(s)	415
Bst6I	CTCTTC	2 cut(s)	19, 95
BstACI	GRCGYC	1 cut(s)	332
BstAFI	CTTAAG	2 cut(s)	221, 227
BstC8I	GCNNGC	1 cut(s)	336
BstDEI	CTNAG	4 cut(s)	18, 288, 339, 491
BstDSI	CCRYGG	1 cut(s)	82
BstENI	CCTNNNNNAGG	1 cut(s)	437
BstF5I	GGATG	3 cut(s)	138, 181, 271
BstFNI	CGCG	1 cut(s)	84
BstH2I	RGCGCY	2 cut(s)	54, 335
BstHHI	GCGC	2 cut(s)	53, 334
BstKTI	GATC	1 cut(s)	218
BstMAI	GTCTC	1 cut(s)	152
BstMBI	GATC	1 cut(s)	215
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 284, 344
BstNI	CCWGG	1 cut(s)	404
BstSCI	CCNGG	2 cut(s)	327, 402
BstSFI	CTRYAG	1 cut(s)	414
BstSLI	GKGCMC	1 cut(s)	433
BstUI	CGCG	1 cut(s)	84
BstV1I	GCAGC	1 cut(s)	296
BsuRI	GGCC	1 cut(s)	87
BtgI	CCRYGG	1 cut(s)	82
BtsCI	GGATG	3 cut(s)	138, 181, 271
BveI	ACCTGC	1 cut(s)	269
Cac8I	GCNNGC	1 cut(s)	336
CfoI	GCGC	2 cut(s)	53, 334
Cfr13I	GGNCC	1 cut(s)	325
Cfr42I	CCGCGG	1 cut(s)	85
Csp6I	GTAC	1 cut(s)	154
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	4 cut(s)	18, 288, 339, 491
DinI	GGCGCC	1 cut(s)	333
DpnI	GATC	1 cut(s)	217
DpnII	GATC	1 cut(s)	215
Eam1104I	CTCTTC	2 cut(s)	19, 95
EarI	CTCTTC	2 cut(s)	19, 95
EciI	GGCGGA	1 cut(s)	85
Eco24I	GRGCYC	1 cut(s)	296
Eco47I	GGWCC	1 cut(s)	325
EcoNI	CCTNNNNNAGG	1 cut(s)	437
EcoRII	CCWGG	1 cut(s)	402
EcoT38I	GRGCYC	1 cut(s)	296
EgeI	GGCGCC	1 cut(s)	333
EheI	GGCGCC	1 cut(s)	333
FaiI	YATR	5 cut(s)	126, 183, 185, 206, 353
FaqI	GGGAC	1 cut(s)	410
FauI	CCCGC	1 cut(s)	89
Fnu4HI	GCNGC	3 cut(s)	42, 85, 285
FokI	GGATG	3 cut(s)	145, 188, 278
FriOI	GRGCYC	1 cut(s)	296
Fsp4HI	GCNGC	3 cut(s)	42, 85, 285
FspBI	CTAG	1 cut(s)	390
GlaI	GCGC	2 cut(s)	52, 333
GluI	GCNGC	3 cut(s)	42, 85, 285
HaeII	RGCGCY	2 cut(s)	54, 335
HaeIII	GGCC	1 cut(s)	87
HapII	CCGG	3 cut(s)	48, 119, 328
HhaI	GCGC	2 cut(s)	53, 334
Hin1I	GRCGYC	1 cut(s)	332
Hin6I	GCGC	2 cut(s)	51, 332
HinP1I	GCGC	2 cut(s)	51, 332
HindIII	AAGCTT	1 cut(s)	224
HinfI	GANTC	4 cut(s)	29, 115, 251, 371
HpaII	CCGG	3 cut(s)	48, 119, 328
Hpy188I	TCNGA	1 cut(s)	28
Hpy188III	TCNNGA	3 cut(s)	119, 297, 365
HpyAV	CCTTC	4 cut(s)	232, 238, 433, 463
HpyCH4III	ACNGT	1 cut(s)	415
HpyCH4V	TGCA	4 cut(s)	278, 284, 355, 485
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 284, 344
HpyF3I	CTNAG	4 cut(s)	18, 288, 339, 491
Hsp92I	GRCGYC	1 cut(s)	332
HspAI	GCGC	2 cut(s)	51, 332
KasI	GGCGCC	1 cut(s)	331
Kpn2I	TCCGGA	1 cut(s)	118
KspI	CCGCGG	1 cut(s)	85
Kzo9I	GATC	1 cut(s)	215
LmnI	GCTCC	1 cut(s)	429
LpnPI	CCDG	9 cut(s)	61, 132, 183, 264, 268, 341, 348, 389, 416
Lsp1109I	GCAGC	1 cut(s)	296
LweI	GCATC	2 cut(s)	123, 395
MaeI	CTAG	1 cut(s)	390
MalI	GATC	1 cut(s)	217
MboI	GATC	1 cut(s)	215
MboII	GAAGA	2 cut(s)	6, 82
MhlI	GDGCHC	2 cut(s)	296, 433
MluCI	AATT	1 cut(s)	476
Mly113I	GGCGCC	1 cut(s)	332
MroI	TCCGGA	1 cut(s)	118
MseI	TTAA	3 cut(s)	222, 228, 410
MspA1I	CMGCKG	2 cut(s)	84, 287
MspCI	CTTAAG	2 cut(s)	221, 227
MspI	CCGG	3 cut(s)	48, 119, 328
MspR9I	CCNGG	2 cut(s)	329, 404
MvaI	CCWGG	1 cut(s)	404
MvnI	CGCG	1 cut(s)	84
MwoI	GCNNNNNNNGC	3 cut(s)	50, 284, 344
NarI	GGCGCC	1 cut(s)	332
NciI	CCSGG	1 cut(s)	329
NdeII	GATC	1 cut(s)	215
NlaIV	GGNNCC	2 cut(s)	333, 425
PaqCI	CACCTGC	1 cut(s)	269
PfeI	GAWTC	4 cut(s)	29, 115, 251, 371
PkrI	GCNGC	3 cut(s)	43, 86, 286
PluTI	GGCGCC	1 cut(s)	335
Psp6I	CCWGG	1 cut(s)	402
PspGI	CCWGG	1 cut(s)	402
PspN4I	GGNNCC	2 cut(s)	333, 425
PspPI	GGNCC	1 cut(s)	325
PvuII	CAGCTG	1 cut(s)	287
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
SacII	CCGCGG	1 cut(s)	85
SaqAI	TTAA	3 cut(s)	222, 228, 410
SatI	GCNGC	3 cut(s)	42, 85, 285
Sau3AI	GATC	1 cut(s)	215
Sau96I	GGNCC	1 cut(s)	325
ScrFI	CCNGG	2 cut(s)	329, 404
SduI	GDGCHC	2 cut(s)	296, 433
SetI	ASST	8 cut(s)	75, 228, 277, 283, 289, 340, 361, 451
SfaNI	GCATC	2 cut(s)	123, 395
SfcI	CTRYAG	1 cut(s)	414
SfoI	GGCGCC	1 cut(s)	333
Sfr303I	CCGCGG	1 cut(s)	85
SgrBI	CCGCGG	1 cut(s)	85
SinI	GGWCC	1 cut(s)	325
SmlI	CTYRAG	3 cut(s)	221, 227, 295
SmoI	CTYRAG	3 cut(s)	221, 227, 295
Sse9I	AATT	1 cut(s)	476
SsiI	CCGC	4 cut(s)	41, 82, 84, 96
SspDI	GGCGCC	1 cut(s)	331
SspMI	CTAG	1 cut(s)	390
StyD4I	CCNGG	2 cut(s)	327, 402
TaaI	ACNGT	1 cut(s)	415
TasI	AATT	1 cut(s)	476
TauI	GCSGC	2 cut(s)	44, 87
TfiI	GAWTC	4 cut(s)	29, 115, 251, 371
Tru1I	TTAA	3 cut(s)	222, 228, 410
Tru9I	TTAA	3 cut(s)	222, 228, 410
TseI	GCWGC	1 cut(s)	284
TspDTI	ATGAA	1 cut(s)	192
TspGWI	ACGGA	2 cut(s)	416, 445
Vha464I	CTTAAG	2 cut(s)	221, 227
VpaK11BI	GGWCC	1 cut(s)	325
XagI	CCTNNNNNAGG	1 cut(s)	437
XspI	CTAG	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.