Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005487.1

Orthogroup ID

OG0009125

Physical Location & Seq

Genomic Coordinates Reverse (-)

5464 .. 8996

Gene Structure 3533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005487.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

atggcaactccccccagtggacgtctaaagatcaatgttgatggcagtttccggtctgagtcgggggatggaggtattagtgttgtggtcatgacgaatttggtacatgcattgcatccatgtctcgctacttcactcatgtcctttccgctactcatatggaagcggaggcttgtagggcggggttcttcttcaaccgccatggagggcttctcttctcagccgtccgattccaatcaagcggcttccggcgcttccatttccctccaaaacctaccctcccgcggcctcttctccgcccccgttctctctttgaatccgggtaggatgcgagtttgtgtctgtgagtatgagacatcactcccagaggatgaacatataaaaacaaaccaacaaaacatattgattagatcacttaagcttaagaaacagaaggagaagggagattccagttcaaaggatgtgaagggtgcaggtgcagctgagggctcaagaaagagggttgctgaaagagttttggaccgggcgccagctaagaaagcctctatgcaacctcgtcaagaggaatcaagcaatcaagcatctagtagggacttccagggattaactgtagagaggctccgtgcccttttgaaggctaaaggtctttccgtaaagggaaagaaggaggaattgattgcacggctgaggagttcaagtggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDA1 SAP

Protein Analysis

234

Amino Acids

25.19

Weight (kDa)

10.13

Isoelectric Point (pI)

52.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63460 AT5G63460 AT5G63460 AT5G63460
fragaria_vesca	FvH4_5g08180 FvH4_5g08180
malus_domestica	MD06G1142800.v1.1 MD14G1158000.v1.1
prunus_persica	Prupe.5G152100_v2.0.a1
pyrus_communis	pycom06g13260 pycom14g13150
rosa_chinensis	RchiOBHm_Chr7g0190331
rosa_laevigata	RLG00000004541
rosa_multiflora	Rmu_sc0005487.1_g000001 Rmu_ssc0000038.1_g000005
rosa_roxburghii	Rroxscaffold_3G00264720
rosa_rugosa	Rorug06G0504000
rosa_samantha	Rh7AG109600 Rh7BG112200 Rh7CG114500 Rh7DG112600
rosa_wichuraiana	Rw7G009510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	464
AatII	GACGTC	1 cut(s)	25
Acc36I	ACCTGC	1 cut(s)	464
AccB1I	GGYRCC	1 cut(s)	526
AccII	CGCG	1 cut(s)	285
AciI	CCGC	8 cut(s)	149, 166, 181, 198, 242, 283, 285, 297
AcsI	RAATTY	1 cut(s)	97
AcyI	GRCGYC	2 cut(s)	22, 527
AfaI	GTAC	1 cut(s)	105
AfiI	CCNNNNNNNGG	3 cut(s)	17, 284, 634
AflII	CTTAAG	2 cut(s)	416, 422
AgsI	TTSAA	5 cut(s)	195, 316, 456, 634, 696
AjnI	CCWGG	1 cut(s)	597
AluBI	AGCT	3 cut(s)	421, 482, 533
AluI	AGCT	3 cut(s)	421, 482, 533
Alw26I	GTCTC	2 cut(s)	128, 347
AoxI	GGCC	1 cut(s)	286
ApeKI	GCWGC	1 cut(s)	479
ApoI	RAATTY	1 cut(s)	97
AspLEI	GCGC	2 cut(s)	254, 529
AspS9I	GGNCC	1 cut(s)	520
AsuC2I	CCSGG	2 cut(s)	321, 524
AvaII	GGWCC	1 cut(s)	520
BaeGI	GKGCMC	1 cut(s)	628
BanI	GGYRCC	1 cut(s)	526
BanII	GRGCYC	1 cut(s)	491
BbvCI	CCTCAGC	2 cut(s)	483, 686
BbvI	GCAGC	1 cut(s)	491
BccI	CCATC	2 cut(s)	35, 62
BceAI	ACGGC	2 cut(s)	208, 698
BciT130I	CCWGG	1 cut(s)	599
BcnI	CCSGG	2 cut(s)	321, 524
BcoDI	GTCTC	2 cut(s)	128, 347
BfaI	CTAG	1 cut(s)	585
BfmI	CTRYAG	1 cut(s)	609
BfoI	RGCGCY	2 cut(s)	255, 530
BfrI	CTTAAG	2 cut(s)	416, 422
BfuAI	ACCTGC	1 cut(s)	464
BisI	GCNGC	3 cut(s)	243, 286, 480
BlsI	GCNGC	3 cut(s)	244, 287, 481
Bme1390I	CCNGG	3 cut(s)	321, 524, 599
Bme18I	GGWCC	1 cut(s)	520
BmgT120I	GGNCC	1 cut(s)	520
BmiI	GGNNCC	2 cut(s)	528, 620
BmrFI	CCNGG	3 cut(s)	321, 524, 599
BmrI	ACTGGG	1 cut(s)	9
BmsI	GCATC	3 cut(s)	124, 318, 590
BmuI	ACTGGG	1 cut(s)	9
BplI	GAGNNNNNCTC	2 cut(s)	197, 229
Bpu10I	CCTNAGC	2 cut(s)	483, 686
BpuEI	CTTGAG	1 cut(s)	475
BpuMI	CCSGG	2 cut(s)	321, 524
BsaBI	GATNNNNATC	1 cut(s)	234
BsaHI	GRCGYC	2 cut(s)	22, 527
BsaJI	CCNNGG	3 cut(s)	201, 283, 598
BsaWI	WCCGGW	1 cut(s)	51
BsaXI	ACNNNNNCTCC	3 cut(s)	263, 293, 682
Bsc4I	CCNNNNNNNGG	3 cut(s)	17, 284, 634
Bse1I	ACTGG	2 cut(s)	15, 450
Bse3DI	GCAATG	1 cut(s)	110
Bse8I	GATNNNNATC	1 cut(s)	234
BseBI	CCWGG	1 cut(s)	599
BseDI	CCNNGG	3 cut(s)	201, 283, 598
BseGI	GGATG	5 cut(s)	73, 115, 333, 376, 466
BseJI	GATNNNNATC	1 cut(s)	234
BseLI	CCNNNNNNNGG	3 cut(s)	17, 284, 634
BseMI	GCAATG	1 cut(s)	110
BseMII	CTCAG	4 cut(s)	48, 233, 474, 677
BseNI	ACTGG	2 cut(s)	15, 450
BseRI	GAGGAG	1 cut(s)	703
BseSI	GKGCMC	1 cut(s)	628
BseXI	GCAGC	1 cut(s)	491
BsgI	GTGCAG	2 cut(s)	492, 498
Bsh1236I	CGCG	1 cut(s)	285
BshFI	GGCC	1 cut(s)	288
BshNI	GGYRCC	1 cut(s)	526
BsiSI	CCGG	4 cut(s)	52, 249, 320, 523
BslFI	GGGAC	1 cut(s)	605
BslI	CCNNNNNNNGG	3 cut(s)	17, 284, 634
BsmAI	GTCTC	2 cut(s)	128, 347
BsmFI	GGGAC	1 cut(s)	605
BsnI	GGCC	1 cut(s)	288
Bsp1286I	GDGCHC	2 cut(s)	491, 628
Bsp143I	GATC	2 cut(s)	30, 410
Bsp19I	CCATGG	1 cut(s)	201
BspACI	CCGC	8 cut(s)	149, 166, 181, 198, 242, 283, 285, 297
BspANI	GGCC	1 cut(s)	288
BspCNI	CTCAG	4 cut(s)	49, 232, 475, 678
BspFNI	CGCG	1 cut(s)	285
BspHI	TCATGA	1 cut(s)	90
BspLI	GGNNCC	2 cut(s)	528, 620
BspMI	ACCTGC	1 cut(s)	464
BspT107I	GGYRCC	1 cut(s)	526
BspTI	CTTAAG	2 cut(s)	416, 422
BsrDI	GCAATG	1 cut(s)	110
BsrI	ACTGG	2 cut(s)	15, 450
BssECI	CCNNGG	3 cut(s)	201, 283, 598
BssMI	GATC	2 cut(s)	30, 410
BssNI	GRCGYC	2 cut(s)	22, 527
BssT1I	CCWWGG	1 cut(s)	201
Bst2UI	CCWGG	1 cut(s)	599
Bst4CI	ACNGT	1 cut(s)	610
Bst6I	CTCTTC	2 cut(s)	220, 296
BstACI	GRCGYC	2 cut(s)	22, 527
BstAFI	CTTAAG	2 cut(s)	416, 422
BstC8I	GCNNGC	1 cut(s)	531
BstDEI	CTNAG	5 cut(s)	57, 219, 483, 534, 686
BstDSI	CCRYGG	2 cut(s)	201, 283
BstENI	CCTNNNNNAGG	1 cut(s)	632
BstF5I	GGATG	5 cut(s)	73, 115, 333, 376, 466
BstFNI	CGCG	1 cut(s)	285
BstH2I	RGCGCY	2 cut(s)	255, 530
BstHHI	GCGC	2 cut(s)	254, 529
BstKTI	GATC	2 cut(s)	33, 413
BstMAI	GTCTC	2 cut(s)	128, 347
BstMBI	GATC	2 cut(s)	30, 410
BstMWI	GCNNNNNNNGC	4 cut(s)	178, 251, 479, 539
BstNI	CCWGG	1 cut(s)	599
BstNSI	RCATGY	1 cut(s)	110
BstSCI	CCNGG	3 cut(s)	319, 522, 597
BstSFI	CTRYAG	1 cut(s)	609
BstSLI	GKGCMC	1 cut(s)	628
BstUI	CGCG	1 cut(s)	285
BstV1I	GCAGC	1 cut(s)	491
BsuRI	GGCC	1 cut(s)	288
BtgI	CCRYGG	2 cut(s)	201, 283
BtsCI	GGATG	5 cut(s)	73, 115, 333, 376, 466
BtsIMutI	CAGTG	1 cut(s)	22
BveI	ACCTGC	1 cut(s)	464
Cac8I	GCNNGC	1 cut(s)	531
CciI	TCATGA	1 cut(s)	90
CfoI	GCGC	2 cut(s)	254, 529
Cfr13I	GGNCC	1 cut(s)	520
Cfr42I	CCGCGG	1 cut(s)	286
Csp6I	GTAC	1 cut(s)	104
CviAII	CATG	5 cut(s)	91, 107, 120, 139, 202
CviQI	GTAC	1 cut(s)	104
DdeI	CTNAG	5 cut(s)	57, 219, 483, 534, 686
DinI	GGCGCC	1 cut(s)	528
DpnI	GATC	2 cut(s)	32, 412
DpnII	GATC	2 cut(s)	30, 410
Eam1104I	CTCTTC	2 cut(s)	220, 296
EarI	CTCTTC	2 cut(s)	220, 296
EciI	GGCGGA	1 cut(s)	286
Eco130I	CCWWGG	1 cut(s)	201
Eco24I	GRGCYC	1 cut(s)	491
Eco47I	GGWCC	1 cut(s)	520
EcoNI	CCTNNNNNAGG	1 cut(s)	632
EcoRII	CCWGG	1 cut(s)	597
EcoT14I	CCWWGG	1 cut(s)	201
EcoT22I	ATGCAT	1 cut(s)	112
EcoT38I	GRGCYC	1 cut(s)	491
EgeI	GGCGCC	1 cut(s)	528
EheI	GGCGCC	1 cut(s)	528
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	5 cut(s)	94, 110, 123, 142, 205
FaqI	GGGAC	1 cut(s)	605
FatI	CATG	5 cut(s)	90, 106, 119, 138, 201
FauI	CCCGC	2 cut(s)	174, 290
FauNDI	CATATG	1 cut(s)	158
Fnu4HI	GCNGC	3 cut(s)	243, 286, 480
FokI	GGATG	5 cut(s)	80, 102, 340, 383, 473
FriOI	GRGCYC	1 cut(s)	491
Fsp4HI	GCNGC	3 cut(s)	243, 286, 480
FspBI	CTAG	1 cut(s)	585
GlaI	GCGC	2 cut(s)	253, 528
GluI	GCNGC	3 cut(s)	243, 286, 480
HaeII	RGCGCY	2 cut(s)	255, 530
HaeIII	GGCC	1 cut(s)	288
HapII	CCGG	4 cut(s)	52, 249, 320, 523
HhaI	GCGC	2 cut(s)	254, 529
Hin1I	GRCGYC	2 cut(s)	22, 527
Hin1II	CATG	5 cut(s)	94, 110, 123, 142, 205
Hin6I	GCGC	2 cut(s)	252, 527
HinP1I	GCGC	2 cut(s)	252, 527
HindIII	AAGCTT	1 cut(s)	419
HinfI	GANTC	5 cut(s)	59, 230, 316, 446, 566
HpaII	CCGG	4 cut(s)	52, 249, 320, 523
Hpy166II	GTNNAC	1 cut(s)	20
Hpy188I	TCNGA	2 cut(s)	58, 229
Hpy188III	TCNNGA	3 cut(s)	91, 492, 560
Hpy8I	GTNNAC	1 cut(s)	20
HpyAV	CCTTC	5 cut(s)	427, 433, 460, 628, 658
HpyCH4III	ACNGT	1 cut(s)	610
HpyCH4IV	ACGT	1 cut(s)	22
HpyCH4V	TGCA	6 cut(s)	110, 115, 473, 479, 550, 680
HpyF10VI	GCNNNNNNNGC	4 cut(s)	178, 251, 479, 539
HpyF3I	CTNAG	5 cut(s)	57, 219, 483, 534, 686
HpySE526I	ACGT	1 cut(s)	22
Hsp92I	GRCGYC	2 cut(s)	22, 527
Hsp92II	CATG	5 cut(s)	94, 110, 123, 142, 205
HspAI	GCGC	2 cut(s)	252, 527
KasI	GGCGCC	1 cut(s)	526
KspI	CCGCGG	1 cut(s)	286
Kzo9I	GATC	2 cut(s)	30, 410
LmnI	GCTCC	1 cut(s)	624
Lsp1109I	GCAGC	1 cut(s)	491
LweI	GCATC	3 cut(s)	124, 318, 590
MaeI	CTAG	1 cut(s)	585
MaeII	ACGT	1 cut(s)	22
MalI	GATC	2 cut(s)	32, 412
MboI	GATC	2 cut(s)	30, 410
MboII	GAAGA	4 cut(s)	180, 183, 207, 283
MhlI	GDGCHC	2 cut(s)	491, 628
MluCI	AATT	2 cut(s)	97, 671
Mly113I	GGCGCC	1 cut(s)	527
MlyI	GAGTC	1 cut(s)	68
Mph1103I	ATGCAT	1 cut(s)	112
MseI	TTAA	3 cut(s)	417, 423, 605
MspA1I	CMGCKG	2 cut(s)	285, 482
MspCI	CTTAAG	2 cut(s)	416, 422
MspI	CCGG	4 cut(s)	52, 249, 320, 523
MspR9I	CCNGG	3 cut(s)	321, 524, 599
MvaI	CCWGG	1 cut(s)	599
MvnI	CGCG	1 cut(s)	285
MwoI	GCNNNNNNNGC	4 cut(s)	178, 251, 479, 539
NarI	GGCGCC	1 cut(s)	527
NciI	CCSGG	2 cut(s)	321, 524
NcoI	CCATGG	1 cut(s)	201
NdeI	CATATG	1 cut(s)	158
NdeII	GATC	2 cut(s)	30, 410
NlaIII	CATG	5 cut(s)	94, 110, 123, 142, 205
NlaIV	GGNNCC	2 cut(s)	528, 620
NsiI	ATGCAT	1 cut(s)	112
NspI	RCATGY	1 cut(s)	110
PagI	TCATGA	1 cut(s)	90
PaqCI	CACCTGC	1 cut(s)	464
PfeI	GAWTC	4 cut(s)	230, 316, 446, 566
PkrI	GCNGC	3 cut(s)	244, 287, 481
PleI	GAGTC	1 cut(s)	67
PluTI	GGCGCC	1 cut(s)	530
PpsI	GAGTC	1 cut(s)	67
Psp6I	CCWGG	1 cut(s)	597
PspGI	CCWGG	1 cut(s)	597
PspN4I	GGNNCC	2 cut(s)	528, 620
PspPI	GGNCC	1 cut(s)	520
PvuII	CAGCTG	1 cut(s)	482
RsaI	GTAC	1 cut(s)	105
RsaNI	GTAC	1 cut(s)	104
SacII	CCGCGG	1 cut(s)	286
SaqAI	TTAA	3 cut(s)	417, 423, 605
SatI	GCNGC	3 cut(s)	243, 286, 480
Sau3AI	GATC	2 cut(s)	30, 410
Sau96I	GGNCC	1 cut(s)	520
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	3 cut(s)	321, 524, 599
SduI	GDGCHC	2 cut(s)	491, 628
SetI	ASST	9 cut(s)	25, 76, 276, 423, 478, 484, 535, 556, 646
SfaNI	GCATC	3 cut(s)	124, 318, 590
SfcI	CTRYAG	1 cut(s)	609
SfoI	GGCGCC	1 cut(s)	528
Sfr303I	CCGCGG	1 cut(s)	286
SgrBI	CCGCGG	1 cut(s)	286
SinI	GGWCC	1 cut(s)	520
SmlI	CTYRAG	3 cut(s)	416, 422, 490
SmoI	CTYRAG	3 cut(s)	416, 422, 490
Sse9I	AATT	2 cut(s)	97, 671
SsiI	CCGC	8 cut(s)	149, 166, 181, 198, 242, 283, 285, 297
SspDI	GGCGCC	1 cut(s)	526
SspMI	CTAG	1 cut(s)	585
StyD4I	CCNGG	3 cut(s)	319, 522, 597
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	1 cut(s)	610
TaiI	ACGT	1 cut(s)	25
TasI	AATT	2 cut(s)	97, 671
TauI	GCSGC	2 cut(s)	245, 288
TfiI	GAWTC	4 cut(s)	230, 316, 446, 566
Tru1I	TTAA	3 cut(s)	417, 423, 605
Tru9I	TTAA	3 cut(s)	417, 423, 605
TscAI	CASTG	1 cut(s)	22
TseI	GCWGC	1 cut(s)	479
TspDTI	ATGAA	1 cut(s)	387
TspGWI	ACGGA	2 cut(s)	611, 640
TspRI	CASTG	1 cut(s)	22
Vha464I	CTTAAG	2 cut(s)	416, 422
VpaK11BI	GGWCC	1 cut(s)	520
XagI	CCTNNNNNAGG	1 cut(s)	632
XapI	RAATTY	1 cut(s)	97
XceI	RCATGY	1 cut(s)	110
XspI	CTAG	1 cut(s)	585
ZraI	GACGTC	1 cut(s)	23
Zsp2I	ATGCAT	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.