Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0009125

Physical Location & Seq

Genomic Coordinates Forward (+)

28642908 .. 28646035

Gene Structure 3128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1142800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGAGGCCTCGCCTTCTCAGCCGCCGTCAGATTCGAATCAAACGACTTCCGGCCCTTCCATGCTCCTCCAGAACCTCCCCTCCCGCGGCCTCTTCTCCTCCACCGTCCTCTCCTCCAATCCGGGCGGGGTGCGAGTTTATGTATGTACCCATGACACCTCACCCCCAGATGGTCAACTGATACAGACAAACCAACAGAACATATTGATTAGATCACTTACACTTAAGAAACAGAAGGGAGATTCCAGTTCAAAGGATGTGAAAGGCGCCAGTGCAGCTGAAGGTTCTAAAAAGAGGCCTGCTGAAAGAGTTTTGGATAGCAAGGCTTCAGCTAAGAAAGCCATTAATCAAACTAGTTCTCGACAAGGGGGATCAAGCAGTCACGCATCATCTAGTAGGGACTTCAACGGGTTAACTGTCGAGAGGCTCCGTGCCCTTCTGAAGGCTAAGCGTCTTTCTGTAAAGGGAAAAAAGGATGAATTGATTGCACGGCTGAAAAGTTCAAGTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDA1 SAP

Protein Analysis

171

Amino Acids

17.98

Weight (kDa)

10.36

Isoelectric Point (pI)

56.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DDA1	PF10172	22 - 79	1.1e-15	Det1 complexing ubiquitin ligase
SAP	PF02037	134 - 166	3.5e-09	SAP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63460 AT5G63460 AT5G63460 AT5G63460
fragaria_vesca	FvH4_5g08180 FvH4_5g08180
malus_domestica	MD06G1142800.v1.1 MD14G1158000.v1.1
prunus_persica	Prupe.5G152100_v2.0.a1
pyrus_communis	pycom06g13260 pycom14g13150
rosa_chinensis	RchiOBHm_Chr7g0190331
rosa_laevigata	RLG00000004541
rosa_multiflora	Rmu_sc0005487.1_g000001 Rmu_ssc0000038.1_g000005
rosa_roxburghii	Rroxscaffold_3G00264720
rosa_rugosa	Rorug06G0504000
rosa_samantha	Rh7AG109600 Rh7BG112200 Rh7CG114500 Rh7DG112600
rosa_wichuraiana	Rw7G009510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	266
AccII	CGCG	1 cut(s)	87
AciI	CCGC	4 cut(s)	23, 85, 87, 126
AclWI	GGATC	1 cut(s)	379
AcuI	CTGAAG	3 cut(s)	300, 312, 461
AcyI	GRCGYC	1 cut(s)	267
AfaI	GTAC	1 cut(s)	148
AfiI	CCNNNNNNNGG	3 cut(s)	86, 170, 442
AflII	CTTAAG	1 cut(s)	224
AgsI	TTSAA	3 cut(s)	252, 406, 504
AhlI	ACTAGT	1 cut(s)	353
AloI	GAACNNNNNNTCC	2 cut(s)	65, 97
AluBI	AGCT	2 cut(s)	278, 332
AluI	AGCT	2 cut(s)	278, 332
AlwI	GGATC	1 cut(s)	379
AoxI	GGCC	4 cut(s)	6, 52, 88, 296
ApeKI	GCWGC	1 cut(s)	275
AseI	ATTAAT	1 cut(s)	345
AspLEI	GCGC	1 cut(s)	269
AspS9I	GGNCC	1 cut(s)	53
AsuC2I	CCSGG	1 cut(s)	123
AsuHPI	GGTGA	1 cut(s)	153
AsuII	TTCGAA	1 cut(s)	35
BaeGI	GKGCMC	1 cut(s)	436
BanI	GGYRCC	1 cut(s)	266
BbvI	GCAGC	1 cut(s)	287
BccI	CCATC	1 cut(s)	164
BceAI	ACGGC	2 cut(s)	10, 506
BcnI	CCSGG	1 cut(s)	123
BcuI	ACTAGT	1 cut(s)	353
BfaI	CTAG	2 cut(s)	354, 393
BfoI	RGCGCY	1 cut(s)	270
BfrI	CTTAAG	1 cut(s)	224
BisI	GCNGC	3 cut(s)	23, 88, 276
BlpI	GCTNAGC	1 cut(s)	447
BlsI	GCNGC	3 cut(s)	24, 89, 277
Bme1390I	CCNGG	1 cut(s)	123
BmgT120I	GGNCC	1 cut(s)	53
BmiI	GGNNCC	2 cut(s)	268, 428
BmrFI	CCNGG	1 cut(s)	123
BmsI	GCATC	1 cut(s)	395
BpmI	CTGGAG	1 cut(s)	53
Bpu1102I	GCTNAGC	1 cut(s)	447
Bpu14I	TTCGAA	1 cut(s)	35
BpuMI	CCSGG	1 cut(s)	123
BsaBI	GATNNNNATC	1 cut(s)	36
BsaHI	GRCGYC	1 cut(s)	267
BsaJI	CCNNGG	1 cut(s)	85
BsaXI	ACNNNNNCTCC	2 cut(s)	65, 95
Bsc4I	CCNNNNNNNGG	3 cut(s)	86, 170, 442
Bse1I	ACTGG	2 cut(s)	246, 270
Bse8I	GATNNNNATC	1 cut(s)	36
BseDI	CCNNGG	1 cut(s)	85
BseGI	GGATG	2 cut(s)	262, 481
BseJI	GATNNNNATC	1 cut(s)	36
BseLI	CCNNNNNNNGG	3 cut(s)	86, 170, 442
BseMII	CTCAG	1 cut(s)	32
BseNI	ACTGG	2 cut(s)	246, 270
BseRI	GAGGAG	3 cut(s)	56, 88, 103
BseSI	GKGCMC	1 cut(s)	436
BseXI	GCAGC	1 cut(s)	287
BsgI	GTGCAG	1 cut(s)	294
Bsh1236I	CGCG	1 cut(s)	87
BshFI	GGCC	4 cut(s)	8, 54, 90, 298
BshNI	GGYRCC	1 cut(s)	266
BsiSI	CCGG	2 cut(s)	51, 122
BslFI	GGGAC	1 cut(s)	413
BslI	CCNNNNNNNGG	3 cut(s)	86, 170, 442
BsmFI	GGGAC	1 cut(s)	413
BsnI	GGCC	4 cut(s)	8, 54, 90, 298
Bsp119I	TTCGAA	1 cut(s)	35
Bsp1286I	GDGCHC	1 cut(s)	436
Bsp143I	GATC	2 cut(s)	212, 371
Bsp1720I	GCTNAGC	1 cut(s)	447
BspACI	CCGC	4 cut(s)	23, 85, 87, 126
BspANI	GGCC	4 cut(s)	8, 54, 90, 298
BspCNI	CTCAG	1 cut(s)	31
BspFNI	CGCG	1 cut(s)	87
BspLI	GGNNCC	2 cut(s)	268, 428
BspPI	GGATC	1 cut(s)	379
BspT104I	TTCGAA	1 cut(s)	35
BspT107I	GGYRCC	1 cut(s)	266
BspTI	CTTAAG	1 cut(s)	224
BsrI	ACTGG	2 cut(s)	246, 270
BssECI	CCNNGG	1 cut(s)	85
BssMI	GATC	2 cut(s)	212, 371
BssNI	GRCGYC	1 cut(s)	267
Bst4CI	ACNGT	2 cut(s)	106, 418
Bst6I	CTCTTC	1 cut(s)	98
BstACI	GRCGYC	1 cut(s)	267
BstAFI	CTTAAG	1 cut(s)	224
BstBI	TTCGAA	1 cut(s)	35
BstC8I	GCNNGC	1 cut(s)	300
BstDEI	CTNAG	3 cut(s)	18, 333, 447
BstDSI	CCRYGG	1 cut(s)	85
BstENI	CCTNNNNNAGG	1 cut(s)	440
BstF5I	GGATG	2 cut(s)	262, 481
BstFNI	CGCG	1 cut(s)	87
BstH2I	RGCGCY	1 cut(s)	270
BstHHI	GCGC	1 cut(s)	269
BstKTI	GATC	2 cut(s)	215, 374
BstMBI	GATC	2 cut(s)	212, 371
BstMWI	GCNNNNNNNGC	3 cut(s)	19, 275, 338
BstSCI	CCNGG	1 cut(s)	121
BstSLI	GKGCMC	1 cut(s)	436
BstUI	CGCG	1 cut(s)	87
BstV1I	GCAGC	1 cut(s)	287
BsuRI	GGCC	4 cut(s)	8, 54, 90, 298
BtgI	CCRYGG	1 cut(s)	85
BtsCI	GGATG	2 cut(s)	262, 481
BtsIMutI	CAGTG	1 cut(s)	277
Cac8I	GCNNGC	1 cut(s)	300
CfoI	GCGC	1 cut(s)	269
Cfr13I	GGNCC	1 cut(s)	53
Cfr42I	CCGCGG	1 cut(s)	88
CseI	GACGC	1 cut(s)	440
Csp6I	GTAC	1 cut(s)	147
CviAII	CATG	2 cut(s)	61, 152
CviQI	GTAC	1 cut(s)	147
DdeI	CTNAG	3 cut(s)	18, 333, 447
DinI	GGCGCC	1 cut(s)	268
DpnI	GATC	2 cut(s)	214, 373
DpnII	GATC	2 cut(s)	212, 371
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Eco147I	AGGCCT	2 cut(s)	8, 298
Eco57I	CTGAAG	3 cut(s)	300, 312, 461
EcoNI	CCTNNNNNAGG	1 cut(s)	440
EgeI	GGCGCC	1 cut(s)	268
EheI	GGCGCC	1 cut(s)	268
FaeI	CATG	2 cut(s)	64, 155
FaiI	YATR	5 cut(s)	62, 141, 145, 153, 203
FaqI	GGGAC	1 cut(s)	413
FatI	CATG	2 cut(s)	60, 151
FauI	CCCGC	2 cut(s)	92, 119
Fnu4HI	GCNGC	3 cut(s)	23, 88, 276
FokI	GGATG	2 cut(s)	269, 488
Fsp4HI	GCNGC	3 cut(s)	23, 88, 276
FspBI	CTAG	2 cut(s)	354, 393
GlaI	GCGC	1 cut(s)	268
GluI	GCNGC	3 cut(s)	23, 88, 276
GsuI	CTGGAG	1 cut(s)	53
HaeII	RGCGCY	1 cut(s)	270
HaeIII	GGCC	4 cut(s)	8, 54, 90, 298
HapII	CCGG	2 cut(s)	51, 122
HgaI	GACGC	1 cut(s)	440
HhaI	GCGC	1 cut(s)	269
Hin1I	GRCGYC	1 cut(s)	267
Hin1II	CATG	2 cut(s)	64, 155
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HincII	GTYRAC	2 cut(s)	176, 414
HindII	GTYRAC	2 cut(s)	176, 414
HinfI	GANTC	3 cut(s)	32, 37, 242
HpaI	GTTAAC	1 cut(s)	414
HpaII	CCGG	2 cut(s)	51, 122
HphI	GGTGA	1 cut(s)	153
Hpy166II	GTNNAC	2 cut(s)	176, 414
Hpy188I	TCNGA	2 cut(s)	31, 441
Hpy188III	TCNNGA	3 cut(s)	70, 360, 421
Hpy8I	GTNNAC	2 cut(s)	176, 414
HpyAV	CCTTC	6 cut(s)	24, 66, 229, 275, 436, 446
HpyCH4III	ACNGT	2 cut(s)	106, 418
HpyCH4V	TGCA	2 cut(s)	275, 488
HpyF10VI	GCNNNNNNNGC	3 cut(s)	19, 275, 338
HpyF3I	CTNAG	3 cut(s)	18, 333, 447
Hsp92I	GRCGYC	1 cut(s)	267
Hsp92II	CATG	2 cut(s)	64, 155
HspAI	GCGC	1 cut(s)	267
KasI	GGCGCC	1 cut(s)	266
KspAI	GTTAAC	1 cut(s)	414
KspI	CCGCGG	1 cut(s)	88
Kzo9I	GATC	2 cut(s)	212, 371
LmnI	GCTCC	2 cut(s)	69, 432
LpnPI	CCDG	7 cut(s)	64, 83, 135, 180, 259, 283, 312
Lsp1109I	GCAGC	1 cut(s)	287
LweI	GCATC	1 cut(s)	395
MaeI	CTAG	2 cut(s)	354, 393
MaeIII	GTNAC	1 cut(s)	380
MalI	GATC	2 cut(s)	214, 373
MboI	GATC	2 cut(s)	212, 371
MboII	GAAGA	1 cut(s)	85
MhlI	GDGCHC	1 cut(s)	436
MluCI	AATT	1 cut(s)	479
Mly113I	GGCGCC	1 cut(s)	267
MseI	TTAA	4 cut(s)	225, 345, 413, 511
MspA1I	CMGCKG	2 cut(s)	87, 278
MspCI	CTTAAG	1 cut(s)	224
MspI	CCGG	2 cut(s)	51, 122
MspR9I	CCNGG	1 cut(s)	123
MvnI	CGCG	1 cut(s)	87
MwoI	GCNNNNNNNGC	3 cut(s)	19, 275, 338
NarI	GGCGCC	1 cut(s)	267
NciI	CCSGG	1 cut(s)	123
NdeII	GATC	2 cut(s)	212, 371
NlaIII	CATG	2 cut(s)	64, 155
NlaIV	GGNNCC	2 cut(s)	268, 428
NmuCI	GTSAC	1 cut(s)	380
NspV	TTCGAA	1 cut(s)	35
PceI	AGGCCT	2 cut(s)	8, 298
PcsI	WCGNNNNNNNCGW	1 cut(s)	41
PfeI	GAWTC	3 cut(s)	32, 37, 242
PkrI	GCNGC	3 cut(s)	24, 89, 277
PluTI	GGCGCC	1 cut(s)	270
PshBI	ATTAAT	1 cut(s)	345
PspN4I	GGNNCC	2 cut(s)	268, 428
PspPI	GGNCC	1 cut(s)	53
PvuII	CAGCTG	1 cut(s)	278
RsaI	GTAC	1 cut(s)	148
RsaNI	GTAC	1 cut(s)	147
SacII	CCGCGG	1 cut(s)	88
SaqAI	TTAA	4 cut(s)	225, 345, 413, 511
SatI	GCNGC	3 cut(s)	23, 88, 276
Sau3AI	GATC	2 cut(s)	212, 371
Sau96I	GGNCC	1 cut(s)	53
ScrFI	CCNGG	1 cut(s)	123
SduI	GDGCHC	1 cut(s)	436
SetI	ASST	5 cut(s)	78, 161, 280, 286, 334
SfaNI	GCATC	1 cut(s)	395
SfoI	GGCGCC	1 cut(s)	268
Sfr303I	CCGCGG	1 cut(s)	88
SfuI	TTCGAA	1 cut(s)	35
SgrBI	CCGCGG	1 cut(s)	88
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
SpeI	ACTAGT	1 cut(s)	353
Sse9I	AATT	1 cut(s)	479
SseBI	AGGCCT	2 cut(s)	8, 298
SsiI	CCGC	4 cut(s)	23, 85, 87, 126
SspDI	GGCGCC	1 cut(s)	266
SspMI	CTAG	2 cut(s)	354, 393
StuI	AGGCCT	2 cut(s)	8, 298
StyD4I	CCNGG	1 cut(s)	121
TaaI	ACNGT	2 cut(s)	106, 418
TaqI	TCGA	3 cut(s)	35, 361, 420
TasI	AATT	1 cut(s)	479
TauI	GCSGC	2 cut(s)	25, 90
TfiI	GAWTC	3 cut(s)	32, 37, 242
Tru1I	TTAA	4 cut(s)	225, 345, 413, 511
Tru9I	TTAA	4 cut(s)	225, 345, 413, 511
TscAI	CASTG	1 cut(s)	277
TseFI	GTSAC	1 cut(s)	380
TseI	GCWGC	1 cut(s)	275
Tsp45I	GTSAC	1 cut(s)	380
TspDTI	ATGAA	1 cut(s)	492
TspGWI	ACGGA	1 cut(s)	419
TspRI	CASTG	1 cut(s)	277
Vha464I	CTTAAG	1 cut(s)	224
VspI	ATTAAT	1 cut(s)	345
XagI	CCTNNNNNAGG	1 cut(s)	440
XspI	CTAG	2 cut(s)	354, 393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.