Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0009125

Physical Location & Seq

Genomic Coordinates Forward (+)

9618572 .. 9621475

Gene Structure 2904 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG112600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGAGGGCTTCTCTTCTCAGCCGTCCGATTCCAATCAAGCGGCTTCCGGCGCTTCCATTTCCCTCCAAAACCTACCCTCCCGCGGCCTCTTCTCCGCCCCCGTTCTCTCTTTGAATCCGGGTAGGATGCGAGTTTGTGTCTGTGAGTACGAGACATCACTCCCAGAGGATGAACATATAAAAACAAACCAACAAAACATATTGATTAGATCACTTAAGCTTAAGAAACAGAAGGAGAAGGGAGATTCCAGTTCAAAGGATGTGAAGGGTGCAGGTGCAGCTGAGGGCTCAAGAAAGAGGGTTGCTGAAAGAGTTTTGGACCGGGCGCCAGCTAAGAAAGCCTCTATGCAACCTCGTCAAGAGGAATCAAGCAATCAAGCATCTAGTAGGGACTTCCAGGGATTAACTGTAGAGAGGCTCCGTGCCCTTTTGAAGGCTAAAGGTCTTTCCGTAAAGGGAAAGAAGGAGGAATTGATTGCACGGCTGAGGAGTTCAAGTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDA1 SAP

Protein Analysis

167

Amino Acids

18.13

Weight (kDa)

9.96

Isoelectric Point (pI)

52.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DDA1	PF10172	22 - 78	3.6e-07	Det1 complexing ubiquitin ligase
SAP	PF02037	131 - 163	3e-10	SAP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63460 AT5G63460 AT5G63460 AT5G63460
fragaria_vesca	FvH4_5g08180 FvH4_5g08180
malus_domestica	MD06G1142800.v1.1 MD14G1158000.v1.1
prunus_persica	Prupe.5G152100_v2.0.a1
pyrus_communis	pycom06g13260 pycom14g13150
rosa_chinensis	RchiOBHm_Chr7g0190331
rosa_laevigata	RLG00000004541
rosa_multiflora	Rmu_sc0005487.1_g000001 Rmu_ssc0000038.1_g000005
rosa_roxburghii	Rroxscaffold_3G00264720
rosa_rugosa	Rorug06G0504000
rosa_samantha	Rh7AG109600 Rh7BG112200 Rh7CG114500 Rh7DG112600
rosa_wichuraiana	Rw7G009510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	263
Acc36I	ACCTGC	1 cut(s)	263
AccB1I	GGYRCC	1 cut(s)	325
AccII	CGCG	1 cut(s)	84
AciI	CCGC	4 cut(s)	41, 82, 84, 96
AcyI	GRCGYC	1 cut(s)	326
AfaI	GTAC	1 cut(s)	149
AfiI	CCNNNNNNNGG	2 cut(s)	83, 433
AflII	CTTAAG	2 cut(s)	215, 221
AgsI	TTSAA	4 cut(s)	115, 255, 433, 495
AjnI	CCWGG	1 cut(s)	396
AluBI	AGCT	3 cut(s)	220, 281, 332
AluI	AGCT	3 cut(s)	220, 281, 332
Alw26I	GTCTC	1 cut(s)	146
AoxI	GGCC	1 cut(s)	85
ApeKI	GCWGC	1 cut(s)	278
AspLEI	GCGC	2 cut(s)	53, 328
AspS9I	GGNCC	1 cut(s)	319
AsuC2I	CCSGG	2 cut(s)	120, 323
AvaII	GGWCC	1 cut(s)	319
BaeGI	GKGCMC	1 cut(s)	427
BanI	GGYRCC	1 cut(s)	325
BanII	GRGCYC	1 cut(s)	290
BbvCI	CCTCAGC	2 cut(s)	282, 485
BbvI	GCAGC	1 cut(s)	290
BceAI	ACGGC	2 cut(s)	7, 497
BciT130I	CCWGG	1 cut(s)	398
BcnI	CCSGG	2 cut(s)	120, 323
BcoDI	GTCTC	1 cut(s)	146
BfaI	CTAG	1 cut(s)	384
BfmI	CTRYAG	1 cut(s)	408
BfoI	RGCGCY	2 cut(s)	54, 329
BfrI	CTTAAG	2 cut(s)	215, 221
BfuAI	ACCTGC	1 cut(s)	263
BisI	GCNGC	3 cut(s)	42, 85, 279
BlsI	GCNGC	3 cut(s)	43, 86, 280
Bme1390I	CCNGG	3 cut(s)	120, 323, 398
Bme18I	GGWCC	1 cut(s)	319
BmgT120I	GGNCC	1 cut(s)	319
BmiI	GGNNCC	2 cut(s)	327, 419
BmrFI	CCNGG	3 cut(s)	120, 323, 398
BmsI	GCATC	2 cut(s)	117, 389
BplI	GAGNNNNNCTC	1 cut(s)	28
Bpu10I	CCTNAGC	2 cut(s)	282, 485
BpuEI	CTTGAG	1 cut(s)	274
BpuMI	CCSGG	2 cut(s)	120, 323
BsaBI	GATNNNNATC	1 cut(s)	33
BsaHI	GRCGYC	1 cut(s)	326
BsaJI	CCNNGG	2 cut(s)	82, 397
BsaXI	ACNNNNNCTCC	3 cut(s)	62, 92, 481
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 433
Bse1I	ACTGG	1 cut(s)	249
Bse8I	GATNNNNATC	1 cut(s)	33
BseBI	CCWGG	1 cut(s)	398
BseDI	CCNNGG	2 cut(s)	82, 397
BseGI	GGATG	3 cut(s)	132, 175, 265
BseJI	GATNNNNATC	1 cut(s)	33
BseLI	CCNNNNNNNGG	2 cut(s)	83, 433
BseMII	CTCAG	3 cut(s)	32, 273, 476
BseNI	ACTGG	1 cut(s)	249
BseRI	GAGGAG	1 cut(s)	502
BseSI	GKGCMC	1 cut(s)	427
BseXI	GCAGC	1 cut(s)	290
BsgI	GTGCAG	2 cut(s)	291, 297
Bsh1236I	CGCG	1 cut(s)	84
BshFI	GGCC	1 cut(s)	87
BshNI	GGYRCC	1 cut(s)	325
BsiSI	CCGG	3 cut(s)	48, 119, 322
BslFI	GGGAC	1 cut(s)	404
BslI	CCNNNNNNNGG	2 cut(s)	83, 433
BsmAI	GTCTC	1 cut(s)	146
BsmFI	GGGAC	1 cut(s)	404
BsnI	GGCC	1 cut(s)	87
Bsp1286I	GDGCHC	2 cut(s)	290, 427
Bsp143I	GATC	1 cut(s)	209
BspACI	CCGC	4 cut(s)	41, 82, 84, 96
BspANI	GGCC	1 cut(s)	87
BspCNI	CTCAG	3 cut(s)	31, 274, 477
BspFNI	CGCG	1 cut(s)	84
BspLI	GGNNCC	2 cut(s)	327, 419
BspMI	ACCTGC	1 cut(s)	263
BspT107I	GGYRCC	1 cut(s)	325
BspTI	CTTAAG	2 cut(s)	215, 221
BsrI	ACTGG	1 cut(s)	249
BssECI	CCNNGG	2 cut(s)	82, 397
BssMI	GATC	1 cut(s)	209
BssNI	GRCGYC	1 cut(s)	326
Bst2UI	CCWGG	1 cut(s)	398
Bst4CI	ACNGT	1 cut(s)	409
Bst6I	CTCTTC	2 cut(s)	19, 95
BstACI	GRCGYC	1 cut(s)	326
BstAFI	CTTAAG	2 cut(s)	215, 221
BstC8I	GCNNGC	1 cut(s)	330
BstDEI	CTNAG	4 cut(s)	18, 282, 333, 485
BstDSI	CCRYGG	1 cut(s)	82
BstENI	CCTNNNNNAGG	1 cut(s)	431
BstF5I	GGATG	3 cut(s)	132, 175, 265
BstFNI	CGCG	1 cut(s)	84
BstH2I	RGCGCY	2 cut(s)	54, 329
BstHHI	GCGC	2 cut(s)	53, 328
BstKTI	GATC	1 cut(s)	212
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	1 cut(s)	209
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 278, 338
BstNI	CCWGG	1 cut(s)	398
BstSCI	CCNGG	3 cut(s)	118, 321, 396
BstSFI	CTRYAG	1 cut(s)	408
BstSLI	GKGCMC	1 cut(s)	427
BstUI	CGCG	1 cut(s)	84
BstV1I	GCAGC	1 cut(s)	290
BsuRI	GGCC	1 cut(s)	87
BtgI	CCRYGG	1 cut(s)	82
BtsCI	GGATG	3 cut(s)	132, 175, 265
BveI	ACCTGC	1 cut(s)	263
Cac8I	GCNNGC	1 cut(s)	330
CfoI	GCGC	2 cut(s)	53, 328
Cfr13I	GGNCC	1 cut(s)	319
Cfr42I	CCGCGG	1 cut(s)	85
Csp6I	GTAC	1 cut(s)	148
CviQI	GTAC	1 cut(s)	148
DdeI	CTNAG	4 cut(s)	18, 282, 333, 485
DinI	GGCGCC	1 cut(s)	327
DpnI	GATC	1 cut(s)	211
DpnII	GATC	1 cut(s)	209
Eam1104I	CTCTTC	2 cut(s)	19, 95
EarI	CTCTTC	2 cut(s)	19, 95
EciI	GGCGGA	1 cut(s)	85
Eco24I	GRGCYC	1 cut(s)	290
Eco47I	GGWCC	1 cut(s)	319
EcoNI	CCTNNNNNAGG	1 cut(s)	431
EcoRII	CCWGG	1 cut(s)	396
EcoT38I	GRGCYC	1 cut(s)	290
EgeI	GGCGCC	1 cut(s)	327
EheI	GGCGCC	1 cut(s)	327
FaiI	YATR	4 cut(s)	177, 179, 200, 347
FaqI	GGGAC	1 cut(s)	404
FauI	CCCGC	1 cut(s)	89
Fnu4HI	GCNGC	3 cut(s)	42, 85, 279
FokI	GGATG	3 cut(s)	139, 182, 272
FriOI	GRGCYC	1 cut(s)	290
Fsp4HI	GCNGC	3 cut(s)	42, 85, 279
FspBI	CTAG	1 cut(s)	384
GlaI	GCGC	2 cut(s)	52, 327
GluI	GCNGC	3 cut(s)	42, 85, 279
HaeII	RGCGCY	2 cut(s)	54, 329
HaeIII	GGCC	1 cut(s)	87
HapII	CCGG	3 cut(s)	48, 119, 322
HhaI	GCGC	2 cut(s)	53, 328
Hin1I	GRCGYC	1 cut(s)	326
Hin6I	GCGC	2 cut(s)	51, 326
HinP1I	GCGC	2 cut(s)	51, 326
HindIII	AAGCTT	1 cut(s)	218
HinfI	GANTC	4 cut(s)	29, 115, 245, 365
HpaII	CCGG	3 cut(s)	48, 119, 322
Hpy188I	TCNGA	1 cut(s)	28
Hpy188III	TCNNGA	2 cut(s)	291, 359
HpyAV	CCTTC	5 cut(s)	226, 232, 259, 427, 457
HpyCH4III	ACNGT	1 cut(s)	409
HpyCH4V	TGCA	4 cut(s)	272, 278, 349, 479
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 278, 338
HpyF3I	CTNAG	4 cut(s)	18, 282, 333, 485
Hsp92I	GRCGYC	1 cut(s)	326
HspAI	GCGC	2 cut(s)	51, 326
KasI	GGCGCC	1 cut(s)	325
KspI	CCGCGG	1 cut(s)	85
Kzo9I	GATC	1 cut(s)	209
LmnI	GCTCC	1 cut(s)	423
LpnPI	CCDG	9 cut(s)	61, 132, 177, 258, 262, 335, 342, 383, 410
Lsp1109I	GCAGC	1 cut(s)	290
LweI	GCATC	2 cut(s)	117, 389
MaeI	CTAG	1 cut(s)	384
MalI	GATC	1 cut(s)	211
MboI	GATC	1 cut(s)	209
MboII	GAAGA	2 cut(s)	6, 82
MhlI	GDGCHC	2 cut(s)	290, 427
MluCI	AATT	1 cut(s)	470
Mly113I	GGCGCC	1 cut(s)	326
MseI	TTAA	3 cut(s)	216, 222, 404
MspA1I	CMGCKG	2 cut(s)	84, 281
MspCI	CTTAAG	2 cut(s)	215, 221
MspI	CCGG	3 cut(s)	48, 119, 322
MspR9I	CCNGG	3 cut(s)	120, 323, 398
MvaI	CCWGG	1 cut(s)	398
MvnI	CGCG	1 cut(s)	84
MwoI	GCNNNNNNNGC	3 cut(s)	50, 278, 338
NarI	GGCGCC	1 cut(s)	326
NciI	CCSGG	2 cut(s)	120, 323
NdeII	GATC	1 cut(s)	209
NlaIV	GGNNCC	2 cut(s)	327, 419
PaqCI	CACCTGC	1 cut(s)	263
PfeI	GAWTC	4 cut(s)	29, 115, 245, 365
PkrI	GCNGC	3 cut(s)	43, 86, 280
PluTI	GGCGCC	1 cut(s)	329
Psp6I	CCWGG	1 cut(s)	396
PspGI	CCWGG	1 cut(s)	396
PspN4I	GGNNCC	2 cut(s)	327, 419
PspPI	GGNCC	1 cut(s)	319
PvuII	CAGCTG	1 cut(s)	281
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
SacII	CCGCGG	1 cut(s)	85
SaqAI	TTAA	3 cut(s)	216, 222, 404
SatI	GCNGC	3 cut(s)	42, 85, 279
Sau3AI	GATC	1 cut(s)	209
Sau96I	GGNCC	1 cut(s)	319
ScrFI	CCNGG	3 cut(s)	120, 323, 398
SduI	GDGCHC	2 cut(s)	290, 427
SetI	ASST	7 cut(s)	75, 222, 277, 283, 334, 355, 445
SfaNI	GCATC	2 cut(s)	117, 389
SfcI	CTRYAG	1 cut(s)	408
SfoI	GGCGCC	1 cut(s)	327
Sfr303I	CCGCGG	1 cut(s)	85
SgrBI	CCGCGG	1 cut(s)	85
SinI	GGWCC	1 cut(s)	319
SmlI	CTYRAG	3 cut(s)	215, 221, 289
SmoI	CTYRAG	3 cut(s)	215, 221, 289
Sse9I	AATT	1 cut(s)	470
SsiI	CCGC	4 cut(s)	41, 82, 84, 96
SspDI	GGCGCC	1 cut(s)	325
SspMI	CTAG	1 cut(s)	384
StyD4I	CCNGG	3 cut(s)	118, 321, 396
TaaI	ACNGT	1 cut(s)	409
TasI	AATT	1 cut(s)	470
TauI	GCSGC	2 cut(s)	44, 87
TfiI	GAWTC	4 cut(s)	29, 115, 245, 365
Tru1I	TTAA	3 cut(s)	216, 222, 404
Tru9I	TTAA	3 cut(s)	216, 222, 404
TseI	GCWGC	1 cut(s)	278
TspDTI	ATGAA	1 cut(s)	186
TspGWI	ACGGA	2 cut(s)	410, 439
Vha464I	CTTAAG	2 cut(s)	215, 221
VpaK11BI	GGWCC	1 cut(s)	319
XagI	CCTNNNNNAGG	1 cut(s)	431
XspI	CTAG	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.