Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009125

Physical Location & Seq

Genomic Coordinates Reverse (-)

25413286 .. 25415592

Gene Structure 2307 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G63460.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGAGGCTTCATCATCTCAACCATCCGATTCTTCTGATCAAACTGCTTCCAAGTTCCTTTCTGACCTCCCGTCTCGAGGTTTCTTGTCTTCTACCGTCGTCTCTTCCAATCCGGGAAGCTTGCGGGTCTACATTTGTGAGCATGACACATCTCCCCCAGAAGGACAGCTTATCAAAACAAACCAGCAAAATATACTAATCAGATCTCTCTTGTTAAAGAAGCAAAAAGGCGAATCTAGTTCTAAAGACTCAAAAGGAACTGCTGAAGATGGTCCTAAAAAGAGGGCTGCAAATAGAGCTCTGGACGACAGAAGCTCAGCTAAAAGAGCTGCTAATGCATCTAGACAAGAAGGATCAAGCAGTCGCACAGGCGAAAGAGACTTTCAGTCTTTGACCGTTGAGAAGCTCCGCGCCATGCTCAAGGAGAAGGGCCTTCCAACAAAAGGAAGAAAGGATGAGCTCATTGCGCGTCTGAAGAGTGCCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDA1 SAP

Protein Analysis

162

Amino Acids

17.55

Weight (kDa)

9.85

Isoelectric Point (pI)

54.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DDA1	PF10172	18 - 88	1.9e-07	Det1 complexing ubiquitin ligase
SAP	PF02037	139 - 172	4e-11	SAP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63460 AT5G63460 AT5G63460 AT5G63460
fragaria_vesca	FvH4_5g08180 FvH4_5g08180
malus_domestica	MD06G1142800.v1.1 MD14G1158000.v1.1
prunus_persica	Prupe.5G152100_v2.0.a1
pyrus_communis	pycom06g13260 pycom14g13150
rosa_chinensis	RchiOBHm_Chr7g0190331
rosa_laevigata	RLG00000004541
rosa_multiflora	Rmu_sc0005487.1_g000001 Rmu_ssc0000038.1_g000005
rosa_roxburghii	Rroxscaffold_3G00264720
rosa_rugosa	Rorug06G0504000
rosa_samantha	Rh7AG109600 Rh7BG112200 Rh7CG114500 Rh7DG112600
rosa_wichuraiana	Rw7G009510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	129
AccII	CGCG	2 cut(s)	411, 469
AciI	CCGC	2 cut(s)	124, 409
AclWI	GGATC	1 cut(s)	361
AcuI	CTGAAG	1 cut(s)	285
AfiI	CCNNNNNNNGG	3 cut(s)	77, 161, 443
AhdI	GACNNNNNGTC	2 cut(s)	70, 385
AluBI	AGCT	8 cut(s)	120, 169, 299, 315, 320, 329, 406, 460
AluI	AGCT	8 cut(s)	120, 169, 299, 315, 320, 329, 406, 460
Alw21I	GWGCWC	2 cut(s)	301, 462
Alw26I	GTCTC	3 cut(s)	78, 106, 372
AlwI	GGATC	1 cut(s)	361
Ama87I	CYCGRG	1 cut(s)	75
AoxI	GGCC	1 cut(s)	430
ApeKI	GCWGC	2 cut(s)	287, 329
AspLEI	GCGC	2 cut(s)	413, 469
AspS9I	GGNCC	2 cut(s)	272, 430
AsuC2I	CCSGG	1 cut(s)	114
AvaI	CYCGRG	1 cut(s)	75
AvaII	GGWCC	1 cut(s)	272
BanII	GRGCYC	2 cut(s)	301, 462
BbsI	GAAGAC	1 cut(s)	81
Bbv12I	GWGCWC	2 cut(s)	301, 462
BbvI	GCAGC	2 cut(s)	274, 316
BccI	CCATC	2 cut(s)	31, 263
BclI	TGATCA	1 cut(s)	37
BcnI	CCSGG	1 cut(s)	114
BcoDI	GTCTC	3 cut(s)	78, 106, 372
BfaI	CTAG	2 cut(s)	237, 342
BglII	AGATCT	1 cut(s)	203
BisI	GCNGC	2 cut(s)	288, 330
BlpI	GCTNAGC	1 cut(s)	316
BlsI	GCNGC	2 cut(s)	289, 331
Bme1390I	CCNGG	1 cut(s)	114
Bme18I	GGWCC	1 cut(s)	272
BmeRI	GACNNNNNGTC	2 cut(s)	70, 385
BmeT110I	CYCGRG	1 cut(s)	75
BmgT120I	GGNCC	2 cut(s)	272, 430
BmrFI	CCNGG	1 cut(s)	114
BmsI	GCATC	1 cut(s)	347
BpiI	GAAGAC	1 cut(s)	81
Bpu1102I	GCTNAGC	1 cut(s)	316
BpuEI	CTTGAG	1 cut(s)	404
BpuMI	CCSGG	1 cut(s)	114
Bsc4I	CCNNNNNNNGG	3 cut(s)	77, 161, 443
Bse3DI	GCAATG	1 cut(s)	462
BseGI	GGATG	2 cut(s)	23, 460
BseLI	CCNNNNNNNGG	3 cut(s)	77, 161, 443
BseMI	GCAATG	1 cut(s)	462
BseMII	CTCAG	1 cut(s)	330
BseXI	GCAGC	2 cut(s)	274, 316
Bsh1236I	CGCG	2 cut(s)	411, 469
BshFI	GGCC	1 cut(s)	432
BsiHKAI	GWGCWC	2 cut(s)	301, 462
BsiHKCI	CYCGRG	1 cut(s)	75
BsiSI	CCGG	1 cut(s)	113
BslI	CCNNNNNNNGG	3 cut(s)	77, 161, 443
BsmAI	GTCTC	3 cut(s)	78, 106, 372
BsmBI	CGTCTC	2 cut(s)	78, 106
BsnI	GGCC	1 cut(s)	432
BsoBI	CYCGRG	1 cut(s)	75
Bsp1286I	GDGCHC	2 cut(s)	301, 462
Bsp143I	GATC	3 cut(s)	37, 203, 353
Bsp1720I	GCTNAGC	1 cut(s)	316
BspACI	CCGC	2 cut(s)	124, 409
BspANI	GGCC	1 cut(s)	432
BspCNI	CTCAG	1 cut(s)	329
BspFNI	CGCG	2 cut(s)	411, 469
BspPI	GGATC	1 cut(s)	361
BsrDI	GCAATG	1 cut(s)	462
BssMI	GATC	3 cut(s)	37, 203, 353
Bst4CI	ACNGT	2 cut(s)	97, 397
Bst6I	CTCTTC	2 cut(s)	109, 470
BstC8I	GCNNGC	1 cut(s)	122
BstDEI	CTNAG	1 cut(s)	316
BstF5I	GGATG	2 cut(s)	23, 460
BstFNI	CGCG	2 cut(s)	411, 469
BstHHI	GCGC	2 cut(s)	413, 469
BstKTI	GATC	3 cut(s)	40, 206, 356
BstMAI	GTCTC	3 cut(s)	78, 106, 372
BstMBI	GATC	3 cut(s)	37, 203, 353
BstMWI	GCNNNNNNNGC	4 cut(s)	296, 326, 335, 466
BstSCI	CCNGG	1 cut(s)	112
BstUI	CGCG	2 cut(s)	411, 469
BstV1I	GCAGC	2 cut(s)	274, 316
BstV2I	GAAGAC	1 cut(s)	81
BstX2I	RGATCY	1 cut(s)	203
BstYI	RGATCY	1 cut(s)	203
BsuRI	GGCC	1 cut(s)	432
BtsCI	GGATG	2 cut(s)	23, 460
Cac8I	GCNNGC	1 cut(s)	122
CfoI	GCGC	2 cut(s)	413, 469
Cfr13I	GGNCC	2 cut(s)	272, 430
CseI	GACGC	1 cut(s)	458
CviAII	CATG	2 cut(s)	143, 415
DdeI	CTNAG	1 cut(s)	316
DpnI	GATC	3 cut(s)	39, 205, 355
DpnII	GATC	3 cut(s)	37, 203, 353
DriI	GACNNNNNGTC	2 cut(s)	70, 385
Eam1104I	CTCTTC	2 cut(s)	109, 470
Eam1105I	GACNNNNNGTC	2 cut(s)	70, 385
EarI	CTCTTC	2 cut(s)	109, 470
Ecl136II	GAGCTC	2 cut(s)	299, 460
Eco24I	GRGCYC	2 cut(s)	301, 462
Eco47I	GGWCC	1 cut(s)	272
Eco53kI	GAGCTC	2 cut(s)	299, 460
Eco57I	CTGAAG	1 cut(s)	285
Eco88I	CYCGRG	1 cut(s)	75
EcoICRI	GAGCTC	2 cut(s)	299, 460
EcoO109I	RGGNCCY	1 cut(s)	430
EcoT22I	ATGCAT	1 cut(s)	340
EcoT38I	GRGCYC	2 cut(s)	301, 462
Esp3I	CGTCTC	2 cut(s)	78, 106
FaeI	CATG	2 cut(s)	146, 418
FaiI	YATR	3 cut(s)	144, 194, 416
FalI	AAGNNNNNCTT	2 cut(s)	153, 185
FatI	CATG	2 cut(s)	142, 414
FauI	CCCGC	1 cut(s)	117
FbaI	TGATCA	1 cut(s)	37
FblI	GTMKAC	1 cut(s)	129
Fnu4HI	GCNGC	2 cut(s)	288, 330
FokI	GGATG	2 cut(s)	10, 467
FriOI	GRGCYC	2 cut(s)	301, 462
Fsp4HI	GCNGC	2 cut(s)	288, 330
FspBI	CTAG	2 cut(s)	237, 342
GlaI	GCGC	2 cut(s)	412, 468
GluI	GCNGC	2 cut(s)	288, 330
HaeIII	GGCC	1 cut(s)	432
HapII	CCGG	1 cut(s)	113
HgaI	GACGC	1 cut(s)	458
HhaI	GCGC	2 cut(s)	413, 469
Hin1II	CATG	2 cut(s)	146, 418
Hin6I	GCGC	2 cut(s)	411, 467
HinP1I	GCGC	2 cut(s)	411, 467
HindIII	AAGCTT	1 cut(s)	118
HinfI	GANTC	3 cut(s)	29, 233, 248
HpaII	CCGG	1 cut(s)	113
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	5 cut(s)	28, 37, 64, 203, 474
Hpy188III	TCNNGA	3 cut(s)	75, 302, 342
Hpy8I	GTNNAC	1 cut(s)	130
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	4 cut(s)	155, 344, 421, 443
HpyCH4III	ACNGT	2 cut(s)	97, 397
HpyCH4V	TGCA	2 cut(s)	290, 338
HpyF10VI	GCNNNNNNNGC	4 cut(s)	296, 326, 335, 466
HpyF3I	CTNAG	1 cut(s)	316
Hsp92II	CATG	2 cut(s)	146, 418
HspAI	GCGC	2 cut(s)	411, 467
Ksp22I	TGATCA	1 cut(s)	37
Kzo9I	GATC	3 cut(s)	37, 203, 353
LmnI	GCTCC	1 cut(s)	411
LpnPI	CCDG	5 cut(s)	126, 171, 197, 287, 354
Lsp1109I	GCAGC	2 cut(s)	274, 316
LweI	GCATC	1 cut(s)	347
MaeI	CTAG	2 cut(s)	237, 342
MalI	GATC	3 cut(s)	39, 205, 355
MboI	GATC	3 cut(s)	37, 203, 353
MboII	GAAGA	6 cut(s)	24, 81, 96, 278, 459, 487
MflI	RGATCY	1 cut(s)	203
MhlI	GDGCHC	2 cut(s)	301, 462
MlyI	GAGTC	1 cut(s)	242
MmeI	TCCRAC	1 cut(s)	461
MnlI	CCTC	3 cut(s)	71, 77, 276
Mph1103I	ATGCAT	1 cut(s)	340
MseI	TTAA	1 cut(s)	215
MspI	CCGG	1 cut(s)	113
MspR9I	CCNGG	1 cut(s)	114
MvnI	CGCG	2 cut(s)	411, 469
MwoI	GCNNNNNNNGC	4 cut(s)	296, 326, 335, 466
NciI	CCSGG	1 cut(s)	114
NdeII	GATC	3 cut(s)	37, 203, 353
NlaIII	CATG	2 cut(s)	146, 418
NsiI	ATGCAT	1 cut(s)	340
PaeR7I	CTCGAG	1 cut(s)	75
PfeI	GAWTC	2 cut(s)	29, 233
PfoI	TCCNGGA	1 cut(s)	112
PkrI	GCNGC	2 cut(s)	289, 331
PleI	GAGTC	1 cut(s)	242
PpsI	GAGTC	1 cut(s)	242
Psp124BI	GAGCTC	2 cut(s)	301, 462
PspPI	GGNCC	2 cut(s)	272, 430
PsuI	RGATCY	1 cut(s)	203
SacI	GAGCTC	2 cut(s)	301, 462
SaqAI	TTAA	1 cut(s)	215
SatI	GCNGC	2 cut(s)	288, 330
Sau3AI	GATC	3 cut(s)	37, 203, 353
Sau96I	GGNCC	2 cut(s)	272, 430
SchI	GAGTC	1 cut(s)	242
ScrFI	CCNGG	1 cut(s)	114
SduI	GDGCHC	2 cut(s)	301, 462
SfaNI	GCATC	1 cut(s)	347
Sfr274I	CTCGAG	1 cut(s)	75
SinI	GGWCC	1 cut(s)	272
SlaI	CTCGAG	1 cut(s)	75
SmlI	CTYRAG	2 cut(s)	75, 419
SmoI	CTYRAG	2 cut(s)	75, 419
SsiI	CCGC	2 cut(s)	124, 409
SspMI	CTAG	2 cut(s)	237, 342
SstI	GAGCTC	2 cut(s)	301, 462
StyD4I	CCNGG	1 cut(s)	112
TaaI	ACNGT	2 cut(s)	97, 397
TaqI	TCGA	1 cut(s)	76
TfiI	GAWTC	2 cut(s)	29, 233
Tru1I	TTAA	1 cut(s)	215
Tru9I	TTAA	1 cut(s)	215
TseI	GCWGC	2 cut(s)	287, 329
VpaK11BI	GGWCC	1 cut(s)	272
XbaI	TCTAGA	1 cut(s)	341
XhoI	CTCGAG	1 cut(s)	75
XmiI	GTMKAC	1 cut(s)	129
XspI	CTAG	2 cut(s)	237, 342
Zsp2I	ATGCAT	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.