FvH4_5g08620

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0016331
Physical Location & Seq
Forward (+)
4957316 .. 4958062
747 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g08620.t1

Sequence Viewer

Length: 747 bp
ATGGAAAGCCAAAAGGCAAATGACCCTAGTGTTAAAAGTCCTCAAGTAGAGAAGCTACAAGAGCAGTTCATGAATTTGCAACAAGAGTGGGAGTCATACAAACAGTCCAACCCCAAAACCAAGAGGAGATCATGTTCTTCATCCTCAAGCACCTTGGCCAAAACTGTTGATCAACTCCTTGACAACTCTCCAAGGCACCTCATGTCTTCACTTCAGCACATAATGCCTCCCTCAAAAGGCGATAGCTGGAATGTCAGGACTAATGATCTGGCAGTGGAAGAGATTAAAAGAGATCGAAGGGCTGTGATTGAGAGTGGCAAGTTGAAGGGAAGGAGGCTTTTTGAAGATCAGCATGAAGAAACTGAAATTGGTTATGGAGGAGAAGAGAGTGAATGGGGTAGCTGGGATGATTGGGATCAAGAAAGTGAGATGAGATCACTTCCATTATGTGGTTCTGGTGGTGAAGAGGTTGAATCAGGTGAGAGCAAAGAGATTAAAGTTTGTTTTCAGGATTCCATTTCATCTTTAACCTCTTCCTTATGCGGTGAGAAAATGAAGGAAGAAGAGAAACTGGTGACTGTGGAAAAGAAGGAGGTTGTTAAGATTAAAGGGGGTAATGGGGTAAGTTGCATTGTTATGATCATGCCTGTGCTTGCCATTGCTGCACTTATATTTGCAGTTTGCAGTATCAGAGGTCTTTATGGATATGGGAATGAACATTATGAGCTGATTCTAGTCCCAACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

249

Amino Acids

27.84

Weight (kDa)

5.1

Isoelectric Point (pI)

73.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016331)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g08620
malus_domestica MD06G1138600.v1.1 MD14G1154600.v1.1
prunus_persica Prupe.5G148800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0189791
rosa_laevigata RLG00000004590
rosa_multiflora Rmu_sc0014337.1_g000002 Rmu_sc0029387.1_g000002
rosa_roxburghii Rroxscaffold_3G00265160
rosa_rugosa Rorug06G0499900
rosa_samantha Rh7AG105000 Rh7BG107600 Rh7CG109600 Rh7DG108000
rosa_wichuraiana Rw7G009090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 195
AccB7I CCANNNNNTGG 1 cut(s) 449
AciI CCGC 1 cut(s) 543
AclWI GGATC 1 cut(s) 423
AcoI YGGCCR 1 cut(s) 156
AcsI RAATTY 1 cut(s) 73
AcuI CTGAAG 1 cut(s) 197
AfiI CCNNNNNNNGG 2 cut(s) 236, 449
AgsI TTSAA 3 cut(s) 325, 344, 473
AjuI GAANNNNNNNTTGG 2 cut(s) 351, 383
AloI GAACNNNNNNTCC 2 cut(s) 118, 150
AluBI AGCT 4 cut(s) 55, 246, 402, 727
AluI AGCT 4 cut(s) 55, 246, 402, 727
AlwI GGATC 1 cut(s) 423
AoxI GGCC 1 cut(s) 156
ApeKI GCWGC 1 cut(s) 662
ApoI RAATTY 1 cut(s) 73
AsuHPI GGTGA 4 cut(s) 473, 491, 557, 586
BalI TGGCCA 1 cut(s) 158
BanI GGYRCC 1 cut(s) 195
BbsI GAAGAC 1 cut(s) 198
BbvI GCAGC 1 cut(s) 649
BclI TGATCA 2 cut(s) 169, 639
BfaI CTAG 2 cut(s) 27, 734
BisI GCNGC 1 cut(s) 663
BlsI GCNGC 1 cut(s) 664
BmiI GGNNCC 1 cut(s) 197
BpiI GAAGAC 1 cut(s) 198
BpuEI CTTGAG 2 cut(s) 27, 130
BsaBI GATNNNNATC 1 cut(s) 414
BsaJI CCNNGG 2 cut(s) 153, 191
BsaXI ACNNNNNCTCC 2 cut(s) 118, 148
Bsc4I CCNNNNNNNGG 2 cut(s) 236, 449
Bse1I ACTGG 1 cut(s) 576
Bse3DI GCAATG 1 cut(s) 657
Bse8I GATNNNNATC 1 cut(s) 414
BseDI CCNNGG 2 cut(s) 153, 191
BseGI GGATG 2 cut(s) 140, 412
BseJI GATNNNNATC 1 cut(s) 414
BseLI CCNNNNNNNGG 2 cut(s) 236, 449
BseMI GCAATG 1 cut(s) 657
BseNI ACTGG 1 cut(s) 576
BseRI GAGGAG 2 cut(s) 139, 393
BseXI GCAGC 1 cut(s) 649
BseYI CCCAGC 1 cut(s) 402
BsgI GTGCAG 1 cut(s) 648
BshFI GGCC 1 cut(s) 158
BshNI GGYRCC 1 cut(s) 195
BslFI GGGAC 1 cut(s) 722
BslI CCNNNNNNNGG 2 cut(s) 236, 449
BsmFI GGGAC 1 cut(s) 722
BsnI GGCC 1 cut(s) 158
Bsp143I GATC 8 cut(s) 128, 169, 265, 292, 346, 415, 434, 639
BspACI CCGC 1 cut(s) 543
BspANI GGCC 1 cut(s) 158
BspHI TCATGA 1 cut(s) 69
BspLI GGNNCC 1 cut(s) 197
BspPI GGATC 1 cut(s) 423
BspT107I GGYRCC 1 cut(s) 195
BsrDI GCAATG 1 cut(s) 657
BsrI ACTGG 1 cut(s) 576
BssECI CCNNGG 2 cut(s) 153, 191
BssMI GATC 8 cut(s) 128, 169, 265, 292, 346, 415, 434, 639
BssT1I CCWWGG 2 cut(s) 153, 191
Bst4CI ACNGT 3 cut(s) 105, 166, 580
Bst6I CTCTTC 5 cut(s) 273, 378, 459, 538, 558
BstAPI GCANNNNNTGC 1 cut(s) 223
BstC8I GCNNGC 1 cut(s) 654
BstF5I GGATG 2 cut(s) 140, 412
BstKTI GATC 8 cut(s) 131, 172, 268, 295, 349, 418, 437, 642
BstMBI GATC 8 cut(s) 128, 169, 265, 292, 346, 415, 434, 639
BstMWI GCNNNNNNNGC 3 cut(s) 61, 223, 662
BstV1I GCAGC 1 cut(s) 649
BstV2I GAAGAC 1 cut(s) 198
BsuRI GGCC 1 cut(s) 158
BtsCI GGATG 2 cut(s) 140, 412
BtsI GCAGTG 1 cut(s) 279
BtsIMutI CAGTG 1 cut(s) 279
Cac8I GCNNGC 1 cut(s) 654
CciI TCATGA 1 cut(s) 69
CspCI CAANNNNNGTGG 2 cut(s) 68, 103
CviAII CATG 5 cut(s) 70, 132, 202, 353, 643
CviJI RGCY 8 cut(s) 9, 55, 158, 246, 302, 337, 402, 727
CviKI_1 RGCY 8 cut(s) 9, 55, 158, 246, 302, 337, 402, 727
DpnI GATC 8 cut(s) 130, 171, 267, 294, 348, 417, 436, 641
DpnII GATC 8 cut(s) 128, 169, 265, 292, 346, 415, 434, 639
EaeI YGGCCR 1 cut(s) 156
Eam1104I CTCTTC 5 cut(s) 273, 378, 459, 538, 558
EarI CTCTTC 5 cut(s) 273, 378, 459, 538, 558
Eco130I CCWWGG 2 cut(s) 153, 191
Eco57I CTGAAG 1 cut(s) 197
EcoT14I CCWWGG 2 cut(s) 153, 191
ErhI CCWWGG 2 cut(s) 153, 191
FaeI CATG 5 cut(s) 73, 135, 205, 356, 646
FaqI GGGAC 1 cut(s) 722
FatI CATG 5 cut(s) 69, 131, 201, 352, 642
FbaI TGATCA 2 cut(s) 169, 639
Fnu4HI GCNGC 1 cut(s) 663
FokI GGATG 2 cut(s) 127, 419
Fsp4HI GCNGC 1 cut(s) 663
FspBI CTAG 2 cut(s) 27, 734
GluI GCNGC 1 cut(s) 663
GsaI CCCAGC 1 cut(s) 406
HaeIII GGCC 1 cut(s) 158
Hin1II CATG 5 cut(s) 73, 135, 205, 356, 646
HinfI GANTC 4 cut(s) 92, 473, 512, 730
HphI GGTGA 4 cut(s) 473, 491, 557, 586
Hpy188I TCNGA 1 cut(s) 692
Hpy188III TCNNGA 4 cut(s) 70, 256, 419, 509
HpyAV CCTTC 5 cut(s) 291, 319, 324, 550, 583
HpyCH4III ACNGT 3 cut(s) 105, 166, 580
HpyCH4IV ACGT 1 cut(s) 743
HpyCH4V TGCA 5 cut(s) 79, 630, 665, 677, 684
HpyF10VI GCNNNNNNNGC 3 cut(s) 61, 223, 662
HpySE526I ACGT 1 cut(s) 743
Hsp92II CATG 5 cut(s) 73, 135, 205, 356, 646
Ksp22I TGATCA 2 cut(s) 169, 639
Kzo9I GATC 8 cut(s) 128, 169, 265, 292, 346, 415, 434, 639
LpnPI CCDG 9 cut(s) 232, 241, 254, 388, 441, 462, 494, 557, 660
Lsp1109I GCAGC 1 cut(s) 649
MaeI CTAG 2 cut(s) 27, 734
MaeII ACGT 1 cut(s) 743
MaeIII GTNAC 1 cut(s) 574
MalI GATC 8 cut(s) 130, 171, 267, 294, 348, 417, 436, 641
MboI GATC 8 cut(s) 128, 169, 265, 292, 346, 415, 434, 639
MlsI TGGCCA 1 cut(s) 158
MluCI AATT 2 cut(s) 73, 366
MluNI TGGCCA 1 cut(s) 158
MlyI GAGTC 1 cut(s) 101
MmeI TCCRAC 1 cut(s) 132
Mox20I TGGCCA 1 cut(s) 158
MscI TGGCCA 1 cut(s) 158
MseI TTAA 6 cut(s) 33, 285, 495, 527, 600, 606
MslI CAYNNNNRTG 2 cut(s) 635, 647
Msp20I TGGCCA 1 cut(s) 158
MwoI GCNNNNNNNGC 3 cut(s) 61, 223, 662
NdeII GATC 8 cut(s) 128, 169, 265, 292, 346, 415, 434, 639
NlaIII CATG 5 cut(s) 73, 135, 205, 356, 646
NlaIV GGNNCC 1 cut(s) 197
NmuCI GTSAC 1 cut(s) 574
PagI TCATGA 1 cut(s) 69
PfeI GAWTC 3 cut(s) 473, 512, 730
PflMI CCANNNNNTGG 1 cut(s) 449
PkrI GCNGC 1 cut(s) 664
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
PspFI CCCAGC 1 cut(s) 402
PspN4I GGNNCC 1 cut(s) 197
RseI CAYNNNNRTG 2 cut(s) 635, 647
SaqAI TTAA 6 cut(s) 33, 285, 495, 527, 600, 606
SatI GCNGC 1 cut(s) 663
Sau3AI GATC 8 cut(s) 128, 169, 265, 292, 346, 415, 434, 639
SchI GAGTC 1 cut(s) 101
SmiMI CAYNNNNRTG 2 cut(s) 635, 647
SmlI CTYRAG 2 cut(s) 42, 145
SmoI CTYRAG 2 cut(s) 42, 145
Sse9I AATT 2 cut(s) 73, 366
SsiI CCGC 1 cut(s) 543
SspMI CTAG 2 cut(s) 27, 734
StyI CCWWGG 2 cut(s) 153, 191
TaaI ACNGT 3 cut(s) 105, 166, 580
TaiI ACGT 1 cut(s) 746
TaqI TCGA 1 cut(s) 295
TasI AATT 2 cut(s) 73, 366
TfiI GAWTC 3 cut(s) 473, 512, 730
Tru1I TTAA 6 cut(s) 33, 285, 495, 527, 600, 606
Tru9I TTAA 6 cut(s) 33, 285, 495, 527, 600, 606
TscAI CASTG 1 cut(s) 279
TseFI GTSAC 1 cut(s) 574
TseI GCWGC 1 cut(s) 662
Tsp45I GTSAC 1 cut(s) 574
TspDTI ATGAA 7 cut(s) 58, 86, 129, 369, 510, 569, 729
TspRI CASTG 1 cut(s) 279
Van91I CCANNNNNTGG 1 cut(s) 449
XapI RAATTY 1 cut(s) 73
XspI CTAG 2 cut(s) 27, 734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.