Rw7G009090

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0016331
Physical Location & Seq
Reverse (-)
8523232 .. 8524287
1056 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G009090.1

Sequence Viewer

Length: 738 bp
ATGGACCCTACCATGGAAAGCCTAAAGGCAAATGACCCTAGTGTTAAAAGTCCTCAAGTGGAGAAGCTACAAGAGCAGTTCATGAATTTGCAACAAGAGTGGAAGTCATACAAACAGTCCTACCCCAAAACCAAGAGGAGATCATATTCTTCATCATCAAGCACCATGGCCAAAACCCGATCAAGGCACCTCATGTCTTCACCTCAGCACAGAATGTTTCGCTCGGAAGGCGATAATTGGAATGTCAGGACTAATGATCTTGCAGTGGAAGAGATCAGAAGAGACCGAAGGGCGGCGATTGAGAGTGGCAAGTTGAAGGGGAGGAGGCTGTTTGAGGATGAGCATGAAGAAACTGAGATTGGTTATGGAGGAGAAGAGAGTGAATGGGGTAGCTGGGATGATTGGGATCAGGAGAGTGAGGTGAGATCACTTCCATTATGTGGTTCTGGTGGTGAAGAAGTTGAATCAGGTAAGAGCAAAGAGATTAAAGTTTGTTTTCAGGATTCCATTTCATCTTTGACCTCTTCCCCATGTGGTGAGAAAATGAAGGAAGAAGAGAAACTGGTGACTGTGGAAGAGAAGGAGGTTGTTGAGAATAAAGGGGGTAATTGGGTAAGGTGCATTGTTGTGATCATGCCTGTGATTGCCATTGCTGCACTTATATTTGCAATTTGCAGTATCACGGGTCTTTATGGATATGGGAATGAACATTATGAGCTAATTCTAGTCCCAACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

245

Amino Acids

27.9

Weight (kDa)

5.19

Isoelectric Point (pI)

74.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016331)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g08620
malus_domestica MD06G1138600.v1.1 MD14G1154600.v1.1
prunus_persica Prupe.5G148800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0189791
rosa_laevigata RLG00000004590
rosa_multiflora Rmu_sc0014337.1_g000002 Rmu_sc0029387.1_g000002
rosa_roxburghii Rroxscaffold_3G00265160
rosa_rugosa Rorug06G0499900
rosa_samantha Rh7AG105000 Rh7BG107600 Rh7CG109600 Rh7DG108000
rosa_wichuraiana Rw7G009090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 186
AccB7I CCANNNNNTGG 1 cut(s) 440
AciI CCGC 1 cut(s) 293
AclWI GGATC 1 cut(s) 414
AcoI YGGCCR 1 cut(s) 168
AcsI RAATTY 1 cut(s) 85
AfiI CCNNNNNNNGG 4 cut(s) 13, 183, 292, 440
AgsI TTSAA 2 cut(s) 316, 464
AjuI GAANNNNNNNTTGG 2 cut(s) 342, 374
AluBI AGCT 3 cut(s) 67, 393, 718
AluI AGCT 3 cut(s) 67, 393, 718
Alw26I GTCTC 1 cut(s) 276
AlwI GGATC 1 cut(s) 414
AoxI GGCC 1 cut(s) 168
ApeKI GCWGC 1 cut(s) 653
ApoI RAATTY 1 cut(s) 85
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 5 cut(s) 192, 433, 464, 548, 577
AvaII GGWCC 1 cut(s) 4
BalI TGGCCA 1 cut(s) 170
BanI GGYRCC 1 cut(s) 186
BbsI GAAGAC 1 cut(s) 189
BbvCI CCTCAGC 1 cut(s) 204
BbvI GCAGC 1 cut(s) 640
BclI TGATCA 1 cut(s) 630
BcoDI GTCTC 1 cut(s) 276
BfaI CTAG 2 cut(s) 39, 725
BisI GCNGC 2 cut(s) 294, 654
BlsI GCNGC 2 cut(s) 295, 655
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 2 cut(s) 6, 188
BpiI GAAGAC 1 cut(s) 189
Bpu10I CCTNAGC 1 cut(s) 204
BpuEI CTTGAG 1 cut(s) 39
BsaBI GATNNNNATC 1 cut(s) 405
BsaI GGTCTC 1 cut(s) 276
BsaJI CCNNGG 2 cut(s) 12, 165
Bsc4I CCNNNNNNNGG 4 cut(s) 13, 183, 292, 440
Bse1I ACTGG 1 cut(s) 567
Bse3DI GCAATG 1 cut(s) 648
Bse8I GATNNNNATC 1 cut(s) 405
BseDI CCNNGG 2 cut(s) 12, 165
BseGI GGATG 2 cut(s) 343, 403
BseJI GATNNNNATC 1 cut(s) 405
BseLI CCNNNNNNNGG 4 cut(s) 13, 183, 292, 440
BseMI GCAATG 1 cut(s) 648
BseMII CTCAG 2 cut(s) 218, 345
BseNI ACTGG 1 cut(s) 567
BseRI GAGGAG 3 cut(s) 151, 337, 384
BseXI GCAGC 1 cut(s) 640
BseYI CCCAGC 1 cut(s) 393
BsgI GTGCAG 1 cut(s) 639
BshFI GGCC 1 cut(s) 170
BshNI GGYRCC 1 cut(s) 186
BslFI GGGAC 1 cut(s) 713
BslI CCNNNNNNNGG 4 cut(s) 13, 183, 292, 440
BsmAI GTCTC 1 cut(s) 276
BsmFI GGGAC 1 cut(s) 713
BsnI GGCC 1 cut(s) 170
Bso31I GGTCTC 1 cut(s) 276
Bsp143I GATC 7 cut(s) 140, 179, 256, 273, 406, 425, 630
Bsp19I CCATGG 2 cut(s) 12, 165
BspACI CCGC 1 cut(s) 293
BspANI GGCC 1 cut(s) 170
BspCNI CTCAG 2 cut(s) 217, 346
BspHI TCATGA 1 cut(s) 81
BspLI GGNNCC 2 cut(s) 6, 188
BspPI GGATC 1 cut(s) 414
BspT107I GGYRCC 1 cut(s) 186
BspTNI GGTCTC 1 cut(s) 276
BsrDI GCAATG 1 cut(s) 648
BsrI ACTGG 1 cut(s) 567
BssECI CCNNGG 2 cut(s) 12, 165
BssMI GATC 7 cut(s) 140, 179, 256, 273, 406, 425, 630
BssT1I CCWWGG 2 cut(s) 12, 165
Bst4CI ACNGT 2 cut(s) 117, 571
Bst6I CTCTTC 6 cut(s) 264, 274, 369, 529, 549, 570
BstDEI CTNAG 2 cut(s) 204, 354
BstDSI CCRYGG 2 cut(s) 12, 165
BstF5I GGATG 2 cut(s) 343, 403
BstKTI GATC 7 cut(s) 143, 182, 259, 276, 409, 428, 633
BstMAI GTCTC 1 cut(s) 276
BstMBI GATC 7 cut(s) 140, 179, 256, 273, 406, 425, 630
BstMWI GCNNNNNNNGC 3 cut(s) 73, 228, 653
BstV1I GCAGC 1 cut(s) 640
BstV2I GAAGAC 1 cut(s) 189
BsuRI GGCC 1 cut(s) 170
BtgI CCRYGG 2 cut(s) 12, 165
BtsCI GGATG 2 cut(s) 343, 403
BtsI GCAGTG 1 cut(s) 270
BtsIMutI CAGTG 1 cut(s) 270
CciI TCATGA 1 cut(s) 81
Cfr13I GGNCC 1 cut(s) 4
CspCI CAANNNNNGTGG 2 cut(s) 80, 115
CviAII CATG 7 cut(s) 13, 82, 166, 193, 344, 531, 634
CviJI RGCY 6 cut(s) 21, 67, 170, 328, 393, 718
CviKI_1 RGCY 6 cut(s) 21, 67, 170, 328, 393, 718
DdeI CTNAG 2 cut(s) 204, 354
DpnI GATC 7 cut(s) 142, 181, 258, 275, 408, 427, 632
DpnII GATC 7 cut(s) 140, 179, 256, 273, 406, 425, 630
EaeI YGGCCR 1 cut(s) 168
Eam1104I CTCTTC 6 cut(s) 264, 274, 369, 529, 549, 570
EarI CTCTTC 6 cut(s) 264, 274, 369, 529, 549, 570
Eco130I CCWWGG 2 cut(s) 12, 165
Eco31I GGTCTC 1 cut(s) 276
Eco47I GGWCC 1 cut(s) 4
EcoT14I CCWWGG 2 cut(s) 12, 165
ErhI CCWWGG 2 cut(s) 12, 165
FaeI CATG 7 cut(s) 16, 85, 169, 196, 347, 534, 637
FaqI GGGAC 1 cut(s) 713
FatI CATG 7 cut(s) 12, 81, 165, 192, 343, 530, 633
FbaI TGATCA 1 cut(s) 630
Fnu4HI GCNGC 2 cut(s) 294, 654
FokI GGATG 2 cut(s) 350, 410
Fsp4HI GCNGC 2 cut(s) 294, 654
FspBI CTAG 2 cut(s) 39, 725
GluI GCNGC 2 cut(s) 294, 654
GsaI CCCAGC 1 cut(s) 397
HaeIII GGCC 1 cut(s) 170
Hin1II CATG 7 cut(s) 16, 85, 169, 196, 347, 534, 637
HinfI GANTC 2 cut(s) 464, 503
HphI GGTGA 5 cut(s) 192, 433, 464, 548, 577
Hpy188I TCNGA 2 cut(s) 226, 278
Hpy188III TCNNGA 4 cut(s) 82, 247, 410, 500
HpyAV CCTTC 5 cut(s) 221, 282, 310, 541, 574
HpyCH4III ACNGT 2 cut(s) 117, 571
HpyCH4IV ACGT 1 cut(s) 734
HpyCH4V TGCA 6 cut(s) 91, 263, 621, 656, 668, 675
HpyF10VI GCNNNNNNNGC 3 cut(s) 73, 228, 653
HpyF3I CTNAG 2 cut(s) 204, 354
HpySE526I ACGT 1 cut(s) 734
Hsp92II CATG 7 cut(s) 16, 85, 169, 196, 347, 534, 637
Ksp22I TGATCA 1 cut(s) 630
Kzo9I GATC 7 cut(s) 140, 179, 256, 273, 406, 425, 630
LpnPI CCDG 8 cut(s) 232, 379, 395, 432, 453, 485, 548, 651
Lsp1109I GCAGC 1 cut(s) 640
MaeI CTAG 2 cut(s) 39, 725
MaeII ACGT 1 cut(s) 734
MaeIII GTNAC 1 cut(s) 565
MalI GATC 7 cut(s) 142, 181, 258, 275, 408, 427, 632
MboI GATC 7 cut(s) 140, 179, 256, 273, 406, 425, 630
MlsI TGGCCA 1 cut(s) 170
MluCI AATT 5 cut(s) 85, 235, 607, 669, 720
MluNI TGGCCA 1 cut(s) 170
Mox20I TGGCCA 1 cut(s) 170
MscI TGGCCA 1 cut(s) 170
MseI TTAA 2 cut(s) 45, 486
MslI CAYNNNNRTG 2 cut(s) 626, 638
Msp20I TGGCCA 1 cut(s) 170
MwoI GCNNNNNNNGC 3 cut(s) 73, 228, 653
NcoI CCATGG 2 cut(s) 12, 165
NdeII GATC 7 cut(s) 140, 179, 256, 273, 406, 425, 630
NlaIII CATG 7 cut(s) 16, 85, 169, 196, 347, 534, 637
NlaIV GGNNCC 2 cut(s) 6, 188
NmuCI GTSAC 1 cut(s) 565
PagI TCATGA 1 cut(s) 81
PfeI GAWTC 2 cut(s) 464, 503
PflMI CCANNNNNTGG 1 cut(s) 440
PkrI GCNGC 2 cut(s) 295, 655
PspFI CCCAGC 1 cut(s) 393
PspN4I GGNNCC 2 cut(s) 6, 188
PspPI GGNCC 1 cut(s) 4
RseI CAYNNNNRTG 2 cut(s) 626, 638
SaqAI TTAA 2 cut(s) 45, 486
SatI GCNGC 2 cut(s) 294, 654
Sau3AI GATC 7 cut(s) 140, 179, 256, 273, 406, 425, 630
Sau96I GGNCC 1 cut(s) 4
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 2 cut(s) 626, 638
SmlI CTYRAG 1 cut(s) 54
SmoI CTYRAG 1 cut(s) 54
Sse9I AATT 5 cut(s) 85, 235, 607, 669, 720
SsiI CCGC 1 cut(s) 293
SspMI CTAG 2 cut(s) 39, 725
StyI CCWWGG 2 cut(s) 12, 165
TaaI ACNGT 2 cut(s) 117, 571
TaiI ACGT 1 cut(s) 737
TaqII GACCGA 1 cut(s) 300
TasI AATT 5 cut(s) 85, 235, 607, 669, 720
TauI GCSGC 1 cut(s) 296
TfiI GAWTC 2 cut(s) 464, 503
Tru1I TTAA 2 cut(s) 45, 486
Tru9I TTAA 2 cut(s) 45, 486
TscAI CASTG 1 cut(s) 270
TseFI GTSAC 1 cut(s) 565
TseI GCWGC 1 cut(s) 653
Tsp45I GTSAC 1 cut(s) 565
TspDTI ATGAA 7 cut(s) 70, 98, 141, 360, 501, 560, 720
TspRI CASTG 1 cut(s) 270
Van91I CCANNNNNTGG 1 cut(s) 440
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 85
XspI CTAG 2 cut(s) 39, 725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.